CF832838

Overview
NameCF832838
Unique NameCF832838
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length629
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832838 vs. ExPASy Swiss-Prot
Match: FER_BUMFI (Ferredoxin OS=Bumilleriopsis filiformis PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 9.523e-29
Identity = 58/96 (60.42%), Postives = 73/96 (76.04%), Query Frame = 3
Query:  243 YKVKLIGPNGEENE-FDAPDDAYIIDSAEDAGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 527
            Y V L+      N     PDD +I+D+AE+ G+ELPYSCRAGACSTCAG+++SG++DQS+ SFLDD QM  GF+LTCVAYPTSDC + TH E +LY
Sbjct:    3 YSVTLVNEEKNINAVIKCPDDQFILDAAEEQGIELPYSCRAGACSTCAGKVLSGTIDQSEQSFLDDDQMGAGFLLTCVAYPTSDCKVQTHAEDDLY 98          
BLAST of CF832838 vs. ExPASy Swiss-Prot
Match: FER1_EQUTE (Ferredoxin-1 OS=Equisetum telmateia PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 9.523e-29
Identity = 61/95 (64.21%), Postives = 75/95 (78.95%), Query Frame = 3
Query:  243 YKVKLIGPNGEENEFDAPDDAYIIDSAEDAGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 527
            YK  L  P+GE    D P+   I+D+AE+AG +LP+SCRAGACS+C G++VSGSVDQS+GSFLDD QME+GFVLTC+A P SD VI THKE EL+
Sbjct:    2 YKTVLKTPSGEFT-LDVPEGTTILDAAEEAGYDLPFSCRAGACSSCLGKVVSGSVDQSEGSFLDDGQMEEGFVLTCIAIPESDLVIETHKEEELF 95          
BLAST of CF832838 vs. ExPASy Swiss-Prot
Match: FER_GLEJA (Ferredoxin OS=Gleichenia japonica PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.624e-28
Identity = 56/96 (58.33%), Postives = 74/96 (77.08%), Query Frame = 3
Query:  237 AVYKVKLIGPNGEENEFDAPDDAYIIDSAEDAGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 524
            A++KVK + P+GE    + PDD +I+D+ E+AG++LPYSCRAGACS+C G+++ G VDQS+ SFLDD QM +GFVLTCVAYP  D  I TH E +L
Sbjct:    1 AIFKVKFLTPDGERT-IEVPDDKFILDAGEEAGLDLPYSCRAGACSSCTGKLLDGRVDQSEQSFLDDDQMAEGFVLTCVAYPAGDITIETHAEEKL 95          
BLAST of CF832838 vs. ExPASy Swiss-Prot
Match: FER_ODOSI (Ferredoxin OS=Odontella sinensis GN=petF PE=3 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 2.121e-28
Identity = 58/102 (56.86%), Postives = 76/102 (74.51%), Query Frame = 3
Query:  234 MAVYKVKLIGPNGEENEFDAP----DDAYIIDSAEDAGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 527
            MA YKV L+    EE++ DA     DD +++D+AE+ G+ELPYSCRAGACSTCAG++  G +DQS+ +FLDD Q+  GFVLTC+AYP SDC +  H+E ELY
Sbjct:    1 MATYKVTLLS---EEHDIDATIDCNDDVFLLDAAEEQGIELPYSCRAGACSTCAGKVTEGDIDQSEQTFLDDDQVGAGFVLTCIAYPKSDCTVLVHQEDELY 99          
BLAST of CF832838 vs. ExPASy Swiss-Prot
Match: FER1_EQUAR (Ferredoxin-1 OS=Equisetum arvense PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.121e-28
Identity = 60/95 (63.16%), Postives = 75/95 (78.95%), Query Frame = 3
Query:  243 YKVKLIGPNGEENEFDAPDDAYIIDSAEDAGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 527
            YK  L  P+GE    D P+   I+D+AE+AG +LP+SCRAGACS+C G++VSGSVD+S+GSFLDD QME+GFVLTC+A P SD VI THKE EL+
Sbjct:    2 YKTVLKTPSGEFT-LDVPEGTTILDAAEEAGYDLPFSCRAGACSSCLGKVVSGSVDESEGSFLDDGQMEEGFVLTCIAIPESDLVIETHKEEELF 95          
BLAST of CF832838 vs. ExPASy Swiss-Prot
Match: FER_MARPO (Ferredoxin OS=Marchantia polymorpha PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.771e-28
Identity = 58/94 (61.70%), Postives = 74/94 (78.72%), Query Frame = 3
Query:  243 YKVKLIGPNGEENEFDAPDDAYIIDSAEDAGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 524
            +KV L  P G+ +  D  DD YI+D+AE+AG+ LPYSCRAGACS+CAG++ +G VDQSD SFLDD QM++G+VLTC+AYPTSD  I TH+E  L
Sbjct:    2 FKVTLNTPTGQ-SVIDVEDDEYILDAAEEAGLSLPYSCRAGACSSCAGKVTAGEVDQSDESFLDDDQMDEGYVLTCIAYPTSDLTIDTHQEEAL 94          
BLAST of CF832838 vs. ExPASy Swiss-Prot
Match: FER_RHOPL (Ferredoxin OS=Rhodymenia palmata PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.619e-28
Identity = 60/95 (63.16%), Postives = 71/95 (74.74%), Query Frame = 3
Query:  243 YKVKLIGPNGEENEFDAPDDAYIIDSAEDAGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 527
            Y V L  P G E E +  +  Y++DSAED G++LPYSCRAGACSTCAG +  G+VDQSD SFLDD Q+   FVLTCVAYPTSDC I TH+E +LY
Sbjct:    4 YTVTLSTPGGVE-EIEGDETTYVLDSAEDQGIDLPYSCRAGACSTCAGIVELGTVDQSDQSFLDDDQLNDSFVLTCVAYPTSDCQIKTHQEEKLY 97          
BLAST of CF832838 vs. ExPASy Swiss-Prot
Match: FER_BRYMA (Ferredoxin OS=Bryopsis maxima PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.619e-28
Identity = 55/96 (57.29%), Postives = 76/96 (79.17%), Query Frame = 3
Query:  237 AVYKVKLIGPNGEENEFDAPDDAYIIDSAEDAGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 524
            A YKV L   +G E   D  +D++I+D AE+ G+++P+SCR+G+CSTCAG++  G+VDQS+ +FLDD QME+G+VLTCVAYPTSDC I TH+E E+
Sbjct:    1 ASYKVTLKLDDGSEAVIDCDEDSFILDVAEEEGIDIPFSCRSGSCSTCAGKIEGGTVDQSEQTFLDDDQMEEGYVLTCVAYPTSDCTILTHQEEEM 96          
BLAST of CF832838 vs. ExPASy Swiss-Prot
Match: FER_PERBI (Ferredoxin OS=Peridinium bipes PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.001e-27
Identity = 56/94 (59.57%), Postives = 75/94 (79.79%), Query Frame = 3
Query:  243 YKVKLIGPNGEENEFDAPDDAYIIDSAEDAGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 524
            +KV L  P+G+++ F+ P D+YI+D AE+ G+ELPYSCRAG+CS+CAG++++GS+DQSD +FLDD Q   G+ LTCV YPTSD  I TH ESEL
Sbjct:    1 FKVTLDTPDGKKS-FECPGDSYILDKAEEEGLELPYSCRAGSCSSCAGKVLTGSIDQSDQAFLDDDQGGDGYCLTCVTYPTSDVTIKTHCESEL 93          
BLAST of CF832838 vs. ExPASy Swiss-Prot
Match: FER2_NOSMU (Ferredoxin-2 OS=Nostoc muscorum PE=1 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 4.423e-26
Identity = 54/98 (55.10%), Postives = 73/98 (74.49%), Query Frame = 3
Query:  234 MAVYKVKLIGP-NGEENEFDAPDDAYIIDSAEDAGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 524
            MA YKV+L     G +   + PDD YI+D+AE+AG++LP+SCR+G+CS+C G +  G+VDQSD +FLDD Q+  G VLTCVAYPTS+C I TH+E  +
Sbjct:    1 MATYKVRLFNAAEGLDETIEVPDDEYILDAAEEAGLDLPFSCRSGSCSSCNGILKKGTVDQSDQNFLDDDQIAAGNVLTCVAYPTSNCEIETHREDAI 98          
The following BLAST results are available for this feature:
BLAST of CF832838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER_BUMFI9.523e-2960.42Ferredoxin OS=Bumilleriopsis filiformis PE=1 SV=1[more]
FER1_EQUTE9.523e-2964.21Ferredoxin-1 OS=Equisetum telmateia PE=1 SV=1[more]
FER_GLEJA1.624e-2858.33Ferredoxin OS=Gleichenia japonica PE=1 SV=1[more]
FER_ODOSI2.121e-2856.86Ferredoxin OS=Odontella sinensis GN=petF PE=3 SV=2[more]
FER1_EQUAR2.121e-2863.16Ferredoxin-1 OS=Equisetum arvense PE=1 SV=1[more]
FER_MARPO2.771e-2861.70Ferredoxin OS=Marchantia polymorpha PE=1 SV=1[more]
FER_RHOPL3.619e-2863.16Ferredoxin OS=Rhodymenia palmata PE=1 SV=1[more]
FER_BRYMA3.619e-2857.29Ferredoxin OS=Bryopsis maxima PE=1 SV=1[more]
FER_PERBI4.001e-2759.57Ferredoxin OS=Peridinium bipes PE=1 SV=1[more]
FER2_NOSMU4.423e-2655.10Ferredoxin-2 OS=Nostoc muscorum PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02I12_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02I12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832838 ID=CF832838; Name=CF832838; organism=Citrus sinensis; type=EST; length=629bp
GTGGGGCGGCCAATCGTCGGTTTCACTATTACACTGTCACTCGTACAACC
GAACAACCTCCTGGGTTAAAAGGTATAAACATGTCAACTGTGAGACTTCC
CACATCTTGCTTATTCCAGGCTGCTCCCCGAAGCAAAAAATTTTCTTTGG
TCAAGAGCCCGGCTTCCCTGGGTTCGACCAGGAGTGTTTCTAAAGCATTT
GGACTGAAGTGTTCTTCATTCAAAGCATCTGCAATGGCCGTTTACAAAGT
GAAACTGATTGGACCAAACGGAGAGGAGAATGAGTTTGATGCCCCCGATG
ATGCTTACATCATAGACTCTGCCGAAGATGCCGGAATGGAGCTACCCTAC
TCATGTCGGGCTGGTGCCTGCTCTACTTGTGCTGGGCAGATGGTTTCAGG
CTCCGTTGACCAATCAGATGGATCATTCCTTGATGATAAGCAGATGGAGA
AAGGTTTCGTGCTTACATGCGTTGCATATCCTACATCAGATTGTGTGATT
TACACACACAAGGAATCTGAACTTTACTGAATAATAATGTTACGAGCTTG
GCATTTGCTTTCTGGGATCCGCATTTGTGCTAGAACGGTGGAAGAAACTG
TTGATATTTGCTTATGTTCATCTTTAGCA
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