CF832848

Overview
NameCF832848
Unique NameCF832848
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length660
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8502 contig Csv1_Contig8502:628..1287. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832848 vs. ExPASy Swiss-Prot
Match: RBSK_HAEIN (Ribokinase OS=Haemophilus influenzae GN=rbsK PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.267e-14
Identity = 54/182 (29.67%), Postives = 93/182 (51.10%), Query Frame = 1
Query:   13 CRSAHLEAMKPAKEAGALLSYDPNLRLPLWPSPEEA-REQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESAL---SLWHPN-LKLLLVTLGEHGCRYYTKSFRGAVDAFHVNTVDTTGAGDAFVGALLGKLVDDQSVLEDEPRLREILKFANACGAITTTKKGAIPALPTESEALNLLKGA 543
            C    LE      E  A ++    +++ L P+P +   ++++S+ D   +I  ++ E E LTG +  D++SA+   S++H   ++ +++TLG  G     K     +  F V  +DTT AGD F G  +  L++++S         E ++F  A  AI+ TKKGA  ++PT  E L  L+ A
Sbjct:  135 CLLMQLETPLSGVELAAQIAKKNGVKVVLNPAPAQILSDELLSLID---IITPNETEAEILTGVEVADEQSAVKAASVFHDKGIETVMITLGAKGVFVSRKGKSRIIKGFCVQAIDTTAAGDTFNGGFVTALLEEKS-------FDEAIRFGQAAAAISVTKKGAQSSIPTRQETLEFLEHA 306          
BLAST of CF832848 vs. ExPASy Swiss-Prot
Match: Y1459_PYRHO (Uncharacterized sugar kinase PH1459 OS=Pyrococcus horikoshii GN=PH1459 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.161e-13
Identity = 52/162 (32.10%), Postives = 88/162 (54.32%), Query Frame = 1
Query:   10 PCRSAHLEAMKPAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDK-AEVIKVSDVELEFLTGSDKIDDESALSLWHPNLKLLLVTLGEHGCRYYTKSFRGAVDAFHVNTVDTTGAGDAFVGALLGKLVDDQSVLEDEPRLREILKFANACGAITTTKKGA 492
            P R   ++ +K  K   +L+++D NLRL LW   EE   +++    K A+++K S+ E+ +L     ++ + ++        L  +TLG  GCR         V +++VN +DTTGAGDAF+ ALL  ++  + +      L ++ KFAN   A++T K+GA
Sbjct:  143 PSRETVMKVIKKIK-GSSLIAFDVNLRLDLWRGQEEEMIKVLEESIKLADIVKASEEEVLYLENQG-VEVKGSM--------LTAITLGPKGCRLIKNETVVDVPSYNVNPLDTTGAGDAFMAALLVGILKLKGL-----DLLKLGKFANLVAALSTQKRGA 289          
BLAST of CF832848 vs. ExPASy Swiss-Prot
Match: RBSK_ECOLI (Ribokinase OS=Escherichia coli (strain K12) GN=rbsK PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.216e-12
Identity = 56/168 (33.33%), Postives = 82/168 (48.81%), Query Frame = 1
Query:   28 LEAMKPAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESALS----LWHPNLKLLLVTLGEHGCRYYTKSFRGAVDAFHVNTVDTTGAGDAFVGALLGKLVDDQSVLEDEPRLREILKFANACGAITTTKKGAIPALPTESE 519
            LE+   +  A A +++     + L P+P  ARE    +    ++I  ++ E E LTG    +DE A      L    ++ +L+TLG  G           V  F V  VDT  AGD F GAL+  L      LE++P L E ++FA+A  AI  T+KGA P++P   E
Sbjct:  142 LESPLESVMAAAKIAHQNKTIVALNPAP--ARELPDELLALVDIITPNETEAEKLTGIRVENDEDAAKAAQVLHEKGIRTVLITLGSRGVWASVNGEGQRVPGFRVQAVDTIAAGDTFNGALITAL------LEEKP-LPEAIRFAHAAAAIAVTRKGAQPSVPWREE 300          
BLAST of CF832848 vs. ExPASy Swiss-Prot
Match: RBSK_ECO57 (Ribokinase OS=Escherichia coli O157:H7 GN=rbsK PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.216e-12
Identity = 56/168 (33.33%), Postives = 82/168 (48.81%), Query Frame = 1
Query:   28 LEAMKPAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESALS----LWHPNLKLLLVTLGEHGCRYYTKSFRGAVDAFHVNTVDTTGAGDAFVGALLGKLVDDQSVLEDEPRLREILKFANACGAITTTKKGAIPALPTESE 519
            LE+   +  A A +++     + L P+P  ARE    +    ++I  ++ E E LTG    +DE A      L    ++ +L+TLG  G           V  F V  VDT  AGD F GAL+  L      LE++P L E ++FA+A  AI  T+KGA P++P   E
Sbjct:  142 LESPLESVMAAAKIAHQNKTIVALNPAP--ARELPDELLALVDIITPNETEAEKLTGIRVENDEDAAKAAQVLHEKGIRTVLITLGSRGVWASVNGEGQRVPGFRVQAVDTIAAGDTFNGALITAL------LEEKP-LPEAIRFAHAAAAIAVTRKGAQPSVPWREE 300          
The following BLAST results are available for this feature:
BLAST of CF832848 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
RBSK_HAEIN3.267e-1429.67Ribokinase OS=Haemophilus influenzae GN=rbsK PE=3 ... [more]
Y1459_PYRHO6.161e-1332.10Uncharacterized sugar kinase PH1459 OS=Pyrococcus ... [more]
RBSK_ECOLI5.216e-1233.33Ribokinase OS=Escherichia coli (strain K12) GN=rbs... [more]
RBSK_ECO575.216e-1233.33Ribokinase OS=Escherichia coli O157:H7 GN=rbsK PE=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_02I19_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02I19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832848 ID=CF832848; Name=CF832848; organism=Citrus sinensis; type=EST; length=660bp
CGGTTGGAGCCATGCCGATCAGCGCACTTGGAGGCAATGAAACCAGCCAA
GGAAGCAGGAGCCCTTCTCTCATACGACCCCAACCTCCGGCTACCGTTGT
GGCCCTCGCCGGAGGAGGCGCGCGAGCAGATAATGAGCATCTGGGACAAG
GCCGAGGTAATCAAAGTCAGTGATGTGGAGCTTGAATTCCTCACCGGGAG
TGACAAGATTGATGATGAATCAGCATTGTCGCTTTGGCATCCCAACTTGA
AACTCCTTTTGGTCACCCTTGGTGAGCATGGCTGCAGATACTACACCAAG
AGTTTCAGAGGAGCAGTGGATGCTTTTCATGTGAACACAGTAGATACAAC
CGGCGCTGGTGATGCATTTGTTGGTGCTCTTTTAGGGAAGCTTGTTGATG
ACCAATCTGTTCTTGAGGATGAACCAAGGTTGCGGGAGATATTGAAATTT
GCAAATGCCTGTGGAGCCATCACTACCACCAAGAAGGGAGCAATTCCAGC
TCTACCCACAGAGTCTGAAGCTCTCAACTTACTCAAAGGAGCGTAATAAT
AAACAAAATTATTAGTTCCAATTTTTTTTTTTTGTTTGTATTTTGAATTT
TCTTTTTGTTTGTATTTTGAATTTTCTTTTTGTTTCTACGGAAGTTGCTT
TGAATTCAAT
back to top