CF832853

Overview
NameCF832853
Unique NameCF832853
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length609
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF832853 vs. ExPASy Swiss-Prot
Match: CAIE_ECO57 (Carnitine operon protein caiE OS=Escherichia coli O157:H7 GN=caiE PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 3.659e-14
Identity = 46/118 (38.98%), Postives = 61/118 (51.69%), Query Frame = 3 
Query:  213 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSITVGSGTNIHDNSLVHVAKSNLRGKVLPTTIGDNVTVRHIAVLHGCTDEDEAFVGMGATLLDGVAADRHGMVAAGSLVR 566
            P V   AFV PSA +IGDV VG G  I     LRGD   + V +G NI D  ++H            T +G+N  + H A+LHGC    +A VGM + ++DG       +VAA S V+
Sbjct:   11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYTDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVK 122
[Close]
BLAST of CF832853 vs. ExPASy Swiss-Prot
Match: CAIE_SHISS (Carnitine operon protein caiE OS=Shigella sonnei (strain Ss046) GN=caiE PE=3 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 6.241e-14
Identity = 46/118 (38.98%), Postives = 61/118 (51.69%), Query Frame = 3 
Query:  213 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSITVGSGTNIHDNSLVHVAKSNLRGKVLPTTIGDNVTVRHIAVLHGCTDEDEAFVGMGATLLDGVAADRHGMVAAGSLVR 566
            P V   AFV PSA +IGDV VG G  I     LRGD   + V +G NI D  ++H            T +G+N  + H A+LHGC    +A VGM + ++DG       +VAA S V+
Sbjct:   11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVK 122
[Close]
BLAST of CF832853 vs. ExPASy Swiss-Prot
Match: CAIE_SHIFL (Carnitine operon protein caiE OS=Shigella flexneri GN=caiE PE=3 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 6.241e-14
Identity = 46/118 (38.98%), Postives = 61/118 (51.69%), Query Frame = 3 
Query:  213 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSITVGSGTNIHDNSLVHVAKSNLRGKVLPTTIGDNVTVRHIAVLHGCTDEDEAFVGMGATLLDGVAADRHGMVAAGSLVR 566
            P V   AFV PSA +IGDV VG G  I     LRGD   + V +G NI D  ++H            T +G+N  + H A+LHGC    +A VGM + ++DG       +VAA S V+
Sbjct:   11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVK 122
[Close]
BLAST of CF832853 vs. ExPASy Swiss-Prot
Match: CAIE_SHIF8 (Carnitine operon protein caiE OS=Shigella flexneri serotype 5b (strain 8401) GN=caiE PE=3 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 6.241e-14
Identity = 46/118 (38.98%), Postives = 61/118 (51.69%), Query Frame = 3 
Query:  213 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSITVGSGTNIHDNSLVHVAKSNLRGKVLPTTIGDNVTVRHIAVLHGCTDEDEAFVGMGATLLDGVAADRHGMVAAGSLVR 566
            P V   AFV PSA +IGDV VG G  I     LRGD   + V +G NI D  ++H            T +G+N  + H A+LHGC    +A VGM + ++DG       +VAA S V+
Sbjct:   11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVK 122
[Close]
BLAST of CF832853 vs. ExPASy Swiss-Prot
Match: CAIE_ESCF3 (Carnitine operon protein caiE OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=caiE PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.241e-14
Identity = 46/118 (38.98%), Postives = 61/118 (51.69%), Query Frame = 3 
Query:  213 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSITVGSGTNIHDNSLVHVAKSNLRGKVLPTTIGDNVTVRHIAVLHGCTDEDEAFVGMGATLLDGVAADRHGMVAAGSLVR 566
            P V   AFV PSA +IGDV VG G  I     LRGD   + V +G NI D  ++H            T +G+N  + H A+LHGC    +A VGM + ++DG       +VAA S V+
Sbjct:   11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVK 122
[Close]
BLAST of CF832853 vs. ExPASy Swiss-Prot
Match: CAIE_ECOUT (Carnitine operon protein caiE OS=Escherichia coli (strain UTI89 / UPEC) GN=caiE PE=3 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 6.241e-14
Identity = 46/118 (38.98%), Postives = 61/118 (51.69%), Query Frame = 3 
Query:  213 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSITVGSGTNIHDNSLVHVAKSNLRGKVLPTTIGDNVTVRHIAVLHGCTDEDEAFVGMGATLLDGVAADRHGMVAAGSLVR 566
            P V   AFV PSA +IGDV VG G  I     LRGD   + V +G NI D  ++H            T +G+N  + H A+LHGC    +A VGM + ++DG       +VAA S V+
Sbjct:   11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVK 122
[Close]
BLAST of CF832853 vs. ExPASy Swiss-Prot
Match: CAIE_ECOSM (Carnitine operon protein caiE OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=caiE PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.241e-14
Identity = 46/118 (38.98%), Postives = 61/118 (51.69%), Query Frame = 3 
Query:  213 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSITVGSGTNIHDNSLVHVAKSNLRGKVLPTTIGDNVTVRHIAVLHGCTDEDEAFVGMGATLLDGVAADRHGMVAAGSLVR 566
            P V   AFV PSA +IGDV VG G  I     LRGD   + V +G NI D  ++H            T +G+N  + H A+LHGC    +A VGM + ++DG       +VAA S V+
Sbjct:   11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLLVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVK 122
[Close]
BLAST of CF832853 vs. ExPASy Swiss-Prot
Match: CAIE_ECOLU (Carnitine operon protein caiE OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=caiE PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.241e-14
Identity = 46/118 (38.98%), Postives = 61/118 (51.69%), Query Frame = 3 
Query:  213 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSITVGSGTNIHDNSLVHVAKSNLRGKVLPTTIGDNVTVRHIAVLHGCTDEDEAFVGMGATLLDGVAADRHGMVAAGSLVR 566
            P V   AFV PSA +IGDV VG G  I     LRGD   + V +G NI D  ++H            T +G+N  + H A+LHGC    +A VGM + ++DG       +VAA S V+
Sbjct:   11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVK 122
[Close]
BLAST of CF832853 vs. ExPASy Swiss-Prot
Match: CAIE_ECOL6 (Carnitine operon protein caiE OS=Escherichia coli O6 GN=caiE PE=3 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 6.241e-14
Identity = 46/118 (38.98%), Postives = 61/118 (51.69%), Query Frame = 3 
Query:  213 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSITVGSGTNIHDNSLVHVAKSNLRGKVLPTTIGDNVTVRHIAVLHGCTDEDEAFVGMGATLLDGVAADRHGMVAAGSLVR 566
            P V   AFV PSA +IGDV VG G  I     LRGD   + V +G NI D  ++H            T +G+N  + H A+LHGC    +A VGM + ++DG       +VAA S V+
Sbjct:   11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVK 122
[Close]
BLAST of CF832853 vs. ExPASy Swiss-Prot
Match: CAIE_ECOL5 (Carnitine operon protein caiE OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=caiE PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.241e-14
Identity = 46/118 (38.98%), Postives = 61/118 (51.69%), Query Frame = 3 
Query:  213 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSITVGSGTNIHDNSLVHVAKSNLRGKVLPTTIGDNVTVRHIAVLHGCTDEDEAFVGMGATLLDGVAADRHGMVAAGSLVR 566
            P V   AFV PSA +IGDV VG G  I     LRGD   + V +G NI D  ++H            T +G+N  + H A+LHGC    +A VGM + ++DG       +VAA S V+
Sbjct:   11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVK 122
The following BLAST results are available for this feature:
BLAST of CF832853 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
CAIE_ECO573.659e-1438.98Carnitine operon protein caiE OS=Escherichia coli ... [more]
CAIE_SHISS6.241e-1438.98Carnitine operon protein caiE OS=Shigella sonnei (... [more]
CAIE_SHIFL6.241e-1438.98Carnitine operon protein caiE OS=Shigella flexneri... [more]
CAIE_SHIF86.241e-1438.98Carnitine operon protein caiE OS=Shigella flexneri... [more]
CAIE_ESCF36.241e-1438.98Carnitine operon protein caiE OS=Escherichia fergu... [more]
CAIE_ECOUT6.241e-1438.98Carnitine operon protein caiE OS=Escherichia coli ... [more]
CAIE_ECOSM6.241e-1438.98Carnitine operon protein caiE OS=Escherichia coli ... [more]
CAIE_ECOLU6.241e-1438.98Carnitine operon protein caiE OS=Escherichia coli ... [more]
CAIE_ECOL66.241e-1438.98Carnitine operon protein caiE OS=Escherichia coli ... [more]
CAIE_ECOL56.241e-1438.98Carnitine operon protein caiE OS=Escherichia coli ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02I23_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02I23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832853 ID=CF832853; Name=CF832853; organism=Citrus sinensis; type=EST; length=609bp
AACTTGAGCTCCAAAAGTATCGACGCTCATTCACCGATCCCCAAAGCCAA
CAAGAGATGGGAACCCTAGGGCGAGCACTTTACACCGTTGGCTTCTGGAT
TCACGAAACCGGCCAGGCCCTTGATCGCCTCGGCTGCCGTCTCCAAGGCA
ACTACTACTTCCAAAAGCAACTGTCTAGGCATCCAACTCTCATGAACATA
TTTGATAAAGCTCCCGCAGTCGACAAAGATGCATTTGTTGCTCCAAGTGC
CTCTATCATTGGTGATGTTCAAGTGGGAAGAGGGTCATCTATTTGGTATG
GATGTGTTTTGAGAGGGGATGTGAATAGCATCACTGTTGGATCAGGAACA
AATATACATGACAACTCCCTTGTGCATGTTGCCAAGTCTAATCTAAGAGG
GAAGGTGCTACCGACTACTATTGGGGACAATGTTACTGTACGCCATATTG
CTGTTTTACATGGCTGTACTGATGAGGACGAGGCCTTTGTTGGCATGGGA
GCAACACTACTTGATGGTGTTGCTGCTGATAGACATGGCATGGTTGCTGC
TGGATCTCTTGTGAGGCACAGTACCGCCATCCCTTCTGGATAGGTATGGG
GAGGCAATC
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