CF832912

Overview
NameCF832912
Unique NameCF832912
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length658
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832912 vs. ExPASy Swiss-Prot
Match: BETB_XANC5 (Betaine aldehyde dehydrogenase OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=betB PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.575e-11
Identity = 41/108 (37.96%), Postives = 56/108 (51.85%), Query Frame = 3
Query:    9 SVLSNVKSEMLVST*EVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYV 332
            ++ S+    M +   E+FGPV  LL +  E+EA+  AN T  GLAA + T +L R  R+   LE G+  VN    S    P GG KQSG+GRE     +  +   K V
Sbjct:  372 TIFSDCTDVMTIVREEIFGPVLSLLTYDDEDEAVTRANATTYGLAAGVVTPDLARAHRLIHRLEAGICWVNTWGESPAPMPVGGYKQSGVGRENGLATLQAYTRTKSV 479          
BLAST of CF832912 vs. ExPASy Swiss-Prot
Match: BETB_XANAC (Betaine aldehyde dehydrogenase OS=Xanthomonas axonopodis pv. citri GN=betB PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.575e-11
Identity = 41/108 (37.96%), Postives = 56/108 (51.85%), Query Frame = 3
Query:    9 SVLSNVKSEMLVST*EVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYV 332
            ++ S+    M +   E+FGPV  LL +  E+EA+  AN T  GLAA + T +L R  R+   LE G+  VN    S    P GG KQSG+GRE     +  +   K V
Sbjct:  372 TIFSDCTDVMTIVREEIFGPVLSLLTYDDEDEAVTRANATTYGLAAGVVTPDLARAHRLIHRLEAGICWVNTWGESPAPMPVGGYKQSGVGRENGLATLQAYTRTKSV 479          
BLAST of CF832912 vs. ExPASy Swiss-Prot
Match: AL2C4_ARATH (Aldehyde dehydrogenase family 2 member C4 OS=Arabidopsis thaliana GN=ALDH2C4 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.363e-11
Identity = 39/110 (35.45%), Postives = 61/110 (55.45%), Query Frame = 3
Query:    9 SVLSNVKSEMLVST*EVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYVCL 338
            ++ ++V  +M +   E+FGPV  L+ FKT EE I  AN+T  GLAA I + ++     VS +++ G++ VN         P+GG K SG  RE     +D +L+ K V +
Sbjct:  384 TIFADVTEDMKIYQDEIFGPVMSLMKFKTVEEGIKCANNTKYGLAAGILSQDIDLINTVSRSIKAGIIWVNCYFGFDLDCPYGGYKMSGNCRESGMDALDNYLQTKSVVM 493          
BLAST of CF832912 vs. ExPASy Swiss-Prot
Match: AL221_ARATH (Aldehyde dehydrogenase 22A1 OS=Arabidopsis thaliana GN=ALDH22A1 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.363e-11
Identity = 36/110 (32.73%), Postives = 58/110 (52.73%), Query Frame = 3
Query:    9 SVLSNVKSEMLVST*EVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNE--GLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYV 332
            +VL NV   M +   E FGP+ P++ F T+EE I +AND+   L   +F+ +  R  +++  ++ G+  +N+       +  PFGGVK SG GR     G+     +K V
Sbjct:  418 TVLINVNHNMKIMKEEAFGPIMPIMQFSTDEEVIKLANDSRYALGCAVFSGSKHRAKQIASQIQCGVAAINDFASNYMCQSLPFGGVKDSGFGRFAGIEGLRACCLVKSV 527          
BLAST of CF832912 vs. ExPASy Swiss-Prot
Match: FTHFD_XENLA (10-formyltetrahydrofolate dehydrogenase OS=Xenopus laevis GN=aldh1l1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.392e-11
Identity = 39/112 (34.82%), Postives = 64/112 (57.14%), Query Frame = 3
Query:    9 SVLSNVKSEMLVST*EVFGPVAPLLCFKTEE--EAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYVCL 338
            ++ ++V  EM ++  E FGPV  +  F   +    +  AND+  GLA+ +FT ++ +   VSE L+ G V VN    +   APFGG KQSG G++  +  ++E+L+ K V +
Sbjct:  789 TIFTDVTDEMFIAKEESFGPVMIISKFNDGDIDGVLKRANDSEFGLASGVFTKDINKALYVSEKLQAGTVFVNTYNKTDVAAPFGGFKQSGFGKDLGEEALNEYLKTKAVTI 900          
BLAST of CF832912 vs. ExPASy Swiss-Prot
Match: ALDB_ECOLI (Aldehyde dehydrogenase B OS=Escherichia coli (strain K12) GN=aldB PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 4.392e-11
Identity = 37/100 (37.00%), Postives = 56/100 (56.00%), Query Frame = 3
Query:   27 KSEMLVST*EVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIK 326
            ++ M V   E+FGPV  +  FKT EEA+ +ANDT  GL A +++ N    +++   ++ G V  N        A FGG KQSG+GRE  K  ++ + + K
Sbjct:  399 QNNMRVFQEEIFGPVLAVTTFKTMEEALELANDTQYGLGAGVWSRNGNLAYKMGRGIQAGRVWTNCYHAYPAHAAFGGYKQSGIGRETHKMMLEHYQQTK 498          
BLAST of CF832912 vs. ExPASy Swiss-Prot
Match: ALDY_BACSU (Uncharacterized aldehyde dehydrogenase aldY OS=Bacillus subtilis GN=aldY PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.492e-11
Identity = 36/103 (34.95%), Postives = 66/103 (64.08%), Query Frame = 3
Query:   54 EVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLI--STEVAPFGGVKQSGLGREGSKYGMDEFLEIKYVCLGDMNRK 356
            E+F P+A ++   +++EAI MANDT  GL++ +FT++L++  + +  ++ G+  VN+  +  S  +A FGG K SG+GR G+ + ++EF   K++ +    RK
Sbjct:  381 ELFAPIATIIKAGSDQEAIDMANDTEYGLSSAVFTSDLEKGEKFALQIDSGMTHVNDQSVNDSPNIA-FGGNKASGVGRFGNPWVVEEFTVTKWISIQKQYRK 482          
The following BLAST results are available for this feature:
BLAST of CF832912 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 317
Match NameE-valueIdentityDescription
BETB_XANC52.575e-1137.96Betaine aldehyde dehydrogenase OS=Xanthomonas camp... [more]
BETB_XANAC2.575e-1137.96Betaine aldehyde dehydrogenase OS=Xanthomonas axon... [more]
AL2C4_ARATH3.363e-1135.45Aldehyde dehydrogenase family 2 member C4 OS=Arabi... [more]
AL221_ARATH3.363e-1132.73Aldehyde dehydrogenase 22A1 OS=Arabidopsis thalian... [more]
FTHFD_XENLA4.392e-1134.8210-formyltetrahydrofolate dehydrogenase OS=Xenopus... [more]
ALDB_ECOLI4.392e-1137.00Aldehyde dehydrogenase B OS=Escherichia coli (stra... [more]
ALDY_BACSU7.492e-1134.95Uncharacterized aldehyde dehydrogenase aldY OS=Bac... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_02K13_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02K13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832912 ID=CF832912; Name=CF832912; organism=Citrus sinensis; type=EST; length=658bp
TTATAGCCTCAGTCCTTAGCAATGTCAAGAGTGAGATGCTTGTTTCGACA
TAGGAAGTATTCGGACCTGTGGCCCCACTTCTATGCTTCAAAACTGAGGA
GGAAGCTATCCATATGGCCAATGATACCAATGCAGGGTTAGCTGCTTATA
TATTTACAAACAATCTTCAACGTACATGGCGTGTCTCTGAAGCTCTAGAA
TATGGACTCGTTGGTGTTAATGAAGGATTAATTTCAACAGAGGTGGCTCC
TTTTGGTGGTGTTAAACAATCTGGTCTTGGACGGGAAGGTTCAAAGTATG
GGATGGATGAATTCCTGGAAATAAAATATGTGTGCTTGGGAGACATGAAC
AGAAAATGATGGGCCAGTTTTGTACCTGTATGTTACCGGGCTTATGGAGA
AGAAGGAAGGAGCCTTTAGTACTGCCTTTGAACTGTATTTTGAAGACGGA
TTGGAATAGTGTGAGCCTCAAGCGTTTGATGTGGAGGTAGTAGTGAGCCA
TAGTTGGTTTGCTATTGATACCCCATGTACATAAATAAGTTTGCAAAATG
GAACTTGAATGTCTAGTAGTGAGCCATAGGTGGTTTGCTATTGATACCCC
ATGTACATAAATAAGTTTGCAAAATGGAACTTGAATGTCTGGTGTCAAAA
AAAAAAAA
back to top