CF832939

Overview
NameCF832939
Unique NameCF832939
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length486
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832939 vs. ExPASy Swiss-Prot
Match: AQP_CICVR (Aquaporin AQPcic OS=Cicadella viridis GN=AQP PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 5.862e-20
Identity = 57/161 (35.40%), Postives = 87/161 (54.04%), Query Frame = 3
Query:    3 IFVLFYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSSRDSHVPVLAPLPIGFAEYMVHLATIPITGTGINPAKSLRAAVIYNKDMAWDDPWLF 485
            I  +  C   +SG HINPAVT GL +   +S+++A+ Y++ QC+GAI+G  ++K    + + R       LA G +  +G   E   TFVL+  V S  D +R +  +     AP+ +G A    HLA I  TG+ +NPA+S   AV  N D  W + W++
Sbjct:   69 IATMVQCIGHVSGCHINPAVTCGLLVTGHISILKAIFYIIVQCVGAIAGSAILKVITPAEF-RGTLCMTSLAPGVTPPMGFLVEACITFVLILLVQSVCDDRRKNLGN----AAPVAVGLAITCCHLAAIKYTGSSMNPARSFGPAV--NGDDNWANHWVY 222          
BLAST of CF832939 vs. ExPASy Swiss-Prot
Match: AQP5_PIG (Aquaporin-5 OS=Sus scrofa GN=AQP5 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 5.862e-20
Identity = 57/142 (40.14%), Postives = 83/142 (58.45%), Query Frame = 3
Query:   33 ISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSSRDSHVPVLAP-LPIGFAEYMVHLATIPITGTGINPAKSLRAAVIYNK 455
            +SGGHINPA+T  L +  ++SL+RAV Y+VAQ +GAI+G G++         R     N L +  + G  +  E+I TF L   +FS+TD +R+S     PV +P L IG +  + HL  I  TG  +NPA+S   AV+ N+
Sbjct:   63 VSGGHINPAITLALLVGNQISLLRAVFYVVAQLVGAIAGAGILYGLAPG-NARGNLAVNSLNNNTTPGQAVVVEMILTFQLALCIFSSTDSRRTS-----PVGSPALSIGLSVTLGHLVGIYFTGCSMNPARSFGPAVVMNR 198          
BLAST of CF832939 vs. ExPASy Swiss-Prot
Match: AQP_HAEIX (Aquaporin OS=Haematobia irritans exigua PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 9.999e-20
Identity = 51/151 (33.77%), Postives = 82/151 (54.30%), Query Frame = 3
Query:   33 ISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSSRDSHVPVLAPLPIGFAEYMVHLATIPITGTGINPAKSLRAAVIYNKDMAWDDPWLF 485
            ISG HINPAVT G  +  ++S++++V+Y+  QC+GAI+G  ++K       +    G +  +   + G  +  E + TF+LV  V   +DP R+     +   APL +G +    HL  I +TG  +NPA+S   AV+ N    W D W++
Sbjct:   75 ISGCHINPAVTVGFLIVGEMSIIKSVLYIAVQCVGAIAGAAVIKVGVSEAVSGLDLGVSSFSSTLTVGQAVLIEALITFILVVVVKGVSDPGRTD----IKGSAPLAVGLSIAAGHLCAIKLTGASMNPARSFGPAVVQN---MWIDHWVY 218          
BLAST of CF832939 vs. ExPASy Swiss-Prot
Match: AQP5_RAT (Aquaporin-5 OS=Rattus norvegicus GN=Aqp5 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.706e-19
Identity = 56/142 (39.44%), Postives = 83/142 (58.45%), Query Frame = 3
Query:   33 ISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSSRDSHVPVLAP-LPIGFAEYMVHLATIPITGTGINPAKSLRAAVIYNK 455
            +SGGHINPA+T  L +  ++SL+RAV Y+ AQ +GAI+G G++  +      R     N L +  + G  +  E+I TF L   +FS+TD +R+S     PV +P L IG +  + HL  I  TG  +NPA+S   AV+ N+
Sbjct:   63 VSGGHINPAITLALLIGNQISLLRAVFYVAAQLVGAIAGAGIL-YWLAPLNARGNLAVNALNNNTTPGKAMVVELILTFQLALCIFSSTDSRRTS-----PVGSPALSIGLSVTLGHLVGIYFTGCSMNPARSFGPAVVMNR 198          
BLAST of CF832939 vs. ExPASy Swiss-Prot
Match: AQP5_MOUSE (Aquaporin-5 OS=Mus musculus GN=Aqp5 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.706e-19
Identity = 55/142 (38.73%), Postives = 83/142 (58.45%), Query Frame = 3
Query:   33 ISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSSRDSHVPVLAP-LPIGFAEYMVHLATIPITGTGINPAKSLRAAVIYNK 455
            +SGGHINPA+T  L +  ++SL+RA+ Y+ AQ +GAI+G G++         R     N L++  + G  +  E+I TF L   +FS+TD +R+S     PV +P L IG +  + HL  I  TG  +NPA+S   AV+ N+
Sbjct:   63 VSGGHINPAITLALLIGNQISLLRAIFYVAAQLVGAIAGAGILYWLAPG-NARGNLAVNALSNNTTPGKAVVVELILTFQLALCIFSSTDSRRTS-----PVGSPALSIGLSVTLGHLVGIYFTGCSMNPARSFGPAVVMNR 198          
BLAST of CF832939 vs. ExPASy Swiss-Prot
Match: TIP12_ARATH (Aquaporin TIP1-2 OS=Arabidopsis thaliana GN=TIP1-2 PE=1 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 3.800e-19
Identity = 64/166 (38.55%), Postives = 90/166 (54.22%), Query Frame = 3
Query:    3 IFVLFYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVG----LAAEIIGTFVLVYTVF-SATDPKRSSRDSHVPVLAPLPIGFAEYMVHLATIPITGTGINPAKSLRAAVIYNKDMAWDDPWLF 485
            +FV     A ISGGH+NPAVTFG+ L   ++L+R ++Y +AQ LG+++       F  S+ T   GG    A G S GVG    L  EI+ TF LVYTV+ +A DPK  S    +  +AP+ IGF      LA    +G  +NPA +   AV+      W + W++
Sbjct:   70 LFVAVSVGANISGGHVNPAVTFGVLLGGNITLLRGILYWIAQLLGSVAA-----CFLLSFAT---GGEPIPAFGLSAGVGSLNALVFEIVMTFGLVYTVYATAVDPKNGS----LGTIAPIAIGFIVGANILAGGAFSGASMNPAVAFGPAVV---SWTWTNHWVY 220          
BLAST of CF832939 vs. ExPASy Swiss-Prot
Match: TIP1_MEDSA (Probable aquaporin TIP-type OS=Medicago sativa GN=MCP1 PE=2 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 6.481e-19
Identity = 59/162 (36.42%), Postives = 89/162 (54.94%), Query Frame = 3
Query:    3 IFVLFYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVF-SATDPKRSSRDSHVPVLAPLPIGFAEYMVHLATIPITGTGINPAKSLRAAVIYNKDMAWDDPWLF 485
            +FV     A ISGGH+NPAV FG F+   ++L+R ++Y++AQ LG+I    L+     S    +G     L++G   G  L  EI+ TF LVYTV+ +A DPK+     ++ ++AP+ IGF      L     TG  +NPA S   AV+     +W + W++
Sbjct:   69 LFVAVSVGANISGGHVNPAV-FGAFVGGNITLLRGIVYIIAQLLGSIVCSALLVFVTASSVPAFG-----LSEGVGVGPALVLEIVMTFGLVYTVYATAVDPKK----GNIGIIAPIAIGFIVGANILVGGAFTGASMNPAVSFGPAVV---SWSWSNHWVY 217          
BLAST of CF832939 vs. ExPASy Swiss-Prot
Match: TIP12_MAIZE (Aquaporin TIP1-2 OS=Zea mays GN=TIP1-2 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 6.481e-19
Identity = 64/166 (38.55%), Postives = 90/166 (54.22%), Query Frame = 3
Query:    3 IFVLFYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVG----LAAEIIGTFVLVYTVF-SATDPKRSSRDSHVPVLAPLPIGFAEYMVHLATIPITGTGINPAKSLRAAVIYNKDMAWDDPWLF 485
            +FV     A ISGGH+NPAVTFG F+   +SL++A++Y VAQ LG++    L+K           GGA   A   S GVG    +  E++ TF LVYTV+ +A DPK+      + V+AP+ IGF      LA     G  +NPA S   AV+      W++ W++
Sbjct:   69 LFVAVSVGANISGGHVNPAVTFGAFVGGNISLLKALVYWVAQLLGSVVACLLLKIAT--------GGAALGAFSLSAGVGAMNAVVLEMVMTFGLVYTVYATAVDPKKGD----LGVIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVTG---VWENHWVY 219          
BLAST of CF832939 vs. ExPASy Swiss-Prot
Match: MIP_CHICK (Lens fiber major intrinsic protein OS=Gallus gallus GN=MIP PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 8.465e-19
Identity = 56/151 (37.09%), Postives = 83/151 (54.97%), Query Frame = 3
Query:   33 ISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSSRDSHVPVLAPLPIGFAEYMVHLATIPITGTGINPAKSLRAAVIYNKDMAWDDPWLF 485
            +SGGHINPA+T    LA ++SL RA+ Y++AQ LGA++G G++     +   R   G + L      G G   E++ T   +  VF++ D +   R    P  A LP+GF+  + HL  IP TG G+NPA+S   AVI      + + W+F
Sbjct:   62 VSGGHINPAITLAFLLASQLSLPRALGYLLAQLLGALAGAGVLYGVTPA-AVRGTLGLSALHPSVGPGQGTVVELLLTAQFILCVFASFDDRHDGR----PGSAALPVGFSLALGHLFGIPFTGAGMNPARSFAPAVITRN---FTNHWVF 204          
BLAST of CF832939 vs. ExPASy Swiss-Prot
Match: AQP5_HUMAN (Aquaporin-5 OS=Homo sapiens GN=AQP5 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.886e-18
Identity = 54/142 (38.03%), Postives = 81/142 (57.04%), Query Frame = 3
Query:   33 ISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSSRDSHVPVLAP-LPIGFAEYMVHLATIPITGTGINPAKSLRAAVIYNK 455
            +SGGHINPA+T  L +  ++SL+RA  Y+ AQ +GAI+G G++         R     N L +  + G  +  E+I TF L   +F++TD +R+S     PV +P L IG +  + HL  I  TG  +NPA+S   AV+ N+
Sbjct:   63 VSGGHINPAITLALLVGNQISLLRAFFYVAAQLVGAIAGAGILYGV-APLNARGNLAVNALNNNTTQGQAMVVELILTFQLALCIFASTDSRRTS-----PVGSPALSIGLSVTLGHLVGIYFTGCSMNPARSFGPAVVMNR 198          
The following BLAST results are available for this feature:
BLAST of CF832939 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 150
Match NameE-valueIdentityDescription
AQP_CICVR5.862e-2035.40Aquaporin AQPcic OS=Cicadella viridis GN=AQP PE=1 ... [more]
AQP5_PIG5.862e-2040.14Aquaporin-5 OS=Sus scrofa GN=AQP5 PE=2 SV=1[more]
AQP_HAEIX9.999e-2033.77Aquaporin OS=Haematobia irritans exigua PE=2 SV=1[more]
AQP5_RAT1.706e-1939.44Aquaporin-5 OS=Rattus norvegicus GN=Aqp5 PE=2 SV=1[more]
AQP5_MOUSE1.706e-1938.73Aquaporin-5 OS=Mus musculus GN=Aqp5 PE=2 SV=1[more]
TIP12_ARATH3.800e-1938.55Aquaporin TIP1-2 OS=Arabidopsis thaliana GN=TIP1-2... [more]
TIP1_MEDSA6.481e-1936.42Probable aquaporin TIP-type OS=Medicago sativa GN=... [more]
TIP12_MAIZE6.481e-1938.55Aquaporin TIP1-2 OS=Zea mays GN=TIP1-2 PE=2 SV=1[more]
MIP_CHICK8.465e-1937.09Lens fiber major intrinsic protein OS=Gallus gallu... [more]
AQP5_HUMAN1.886e-1838.03Aquaporin-5 OS=Homo sapiens GN=AQP5 PE=1 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_02L06_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02L06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832939 ID=CF832939; Name=CF832939; organism=Citrus sinensis; type=EST; length=486bp
TGATCTTTGTCCTCTTTTACTGCACCGCCGGTATCTCAGGTGGTCACATT
AACCCGGCAGTGACGTTCGGACTATTCTTGGCCCGCAAGGTGTCGTTGGT
CCGTGCTGTGATGTACATGGTGGCGCAGTGCCTTGGTGCAATCTCCGGCG
TTGGGTTGGTCAAGGCTTTCCAAAAATCTTACTACACAAGGTACGGAGGA
GGGGCCAACGAGCTGGCCGATGGGTACAGCACAGGCGTTGGATTGGCCGC
CGAGATCATCGGCACCTTTGTGTTGGTTTACACTGTCTTCTCGGCCACTG
ATCCCAAAAGAAGCTCCAGAGACTCCCATGTCCCCGTTTTGGCACCGCTC
CCCATTGGATTTGCTGAGTACATGGTACACTTGGCCACAATCCCAATCAC
TGGCACTGGCATTAACCCAGCAAAGAGTCTCCGGGCCGCTGTTATTTACA
ATAAGGACATGGCTTGGGATGATCCATGGCTCTTCT
back to top