CF832949

Overview
NameCF832949
Unique NameCF832949
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length601
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832949 vs. ExPASy Swiss-Prot
Match: PGK_NOSP7 (Phosphoglycerate kinase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=pgk PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.305e-40
Identity = 81/111 (72.97%), Postives = 88/111 (79.28%), Query Frame = -1
Query:  248 IPDGWMGLDVGPDALKSFREGLDSTKTIIWNGPMGGFEFDKFAGGPEAIAKKLAELSGKGVPPIIGGGDSVAPVEKVGLGDKMSHISPGGGASLELLEGKTLPGGLVFDDA 580
            IPDGWMGLD+GPD++K F+E L  TKT+IWNGPMG FEFDKFA G EAIA  LAE+   G   IIGGGDSVA VEKVGL D+MSHIS GGGASLELLEGK LPG    DDA
Sbjct:  290 IPDGWMGLDIGPDSVKFFQEALADTKTVIWNGPMGVFEFDKFAAGTEAIAHTLAEIGKTGTTTIIGGGDSVAAVEKVGLADQMSHISTGGGASLELLEGKVLPGIAALDDA 400          
BLAST of CF832949 vs. ExPASy Swiss-Prot
Match: PGK_ANAVT (Phosphoglycerate kinase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=pgk PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 3.797e-40
Identity = 80/111 (72.07%), Postives = 88/111 (79.28%), Query Frame = -1
Query:  248 IPDGWMGLDVGPDALKSFREGLDSTKTIIWNGPMGGFEFDKFAGGPEAIAKKLAELSGKGVPPIIGGGDSVAPVEKVGLGDKMSHISPGGGASLELLEGKTLPGGLVFDDA 580
            IPDGWMGLD+GPD++K F+E L  TKT+IWNGPMG FEFDKFA G EAIA  LAE+   G   IIGGGDSVA VEKVGL D+MSHIS GGGASLELLEGK LPG    D+A
Sbjct:  290 IPDGWMGLDIGPDSVKVFQEALADTKTVIWNGPMGVFEFDKFAAGTEAIAHTLAEIGKTGTTTIIGGGDSVAAVEKVGLADQMSHISTGGGASLELLEGKVLPGIAALDEA 400          
BLAST of CF832949 vs. ExPASy Swiss-Prot
Match: PGK_PROMM (Phosphoglycerate kinase OS=Prochlorococcus marinus (strain MIT 9313) GN=pgk PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 4.959e-40
Identity = 80/118 (67.80%), Postives = 90/118 (76.27%), Query Frame = -1
Query:  248 KVVPATAIPDGWMGLDVGPDALKSFREGLDSTKTIIWNGPMGGFEFDKFAGGPEAIAKKLAELSGKGVPPIIGGGDSVAPVEKVGLGDKMSHISPGGGASLELLEGKTLPGGLVFDDA 601
            + V   AIPDGWMGLD+GPD++  F++ L   +T+IWNGPMG FEFDKFA G  AIA  LA+LSGKG   IIGGGDSVA VEK GL +KMSHIS GGGASLELLEGK LPG    DDA
Sbjct:  284 QTVSIDAIPDGWMGLDIGPDSINLFQDALADCQTVIWNGPMGVFEFDKFAAGTNAIATTLADLSGKGCCTIIGGGDSVAAVEKAGLAEKMSHISTGGGASLELLEGKVLPGVAALDDA 401          
BLAST of CF832949 vs. ExPASy Swiss-Prot
Match: PGK_PROM3 (Phosphoglycerate kinase OS=Prochlorococcus marinus (strain MIT 9303) GN=pgk PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 4.959e-40
Identity = 80/118 (67.80%), Postives = 90/118 (76.27%), Query Frame = -1
Query:  248 KVVPATAIPDGWMGLDVGPDALKSFREGLDSTKTIIWNGPMGGFEFDKFAGGPEAIAKKLAELSGKGVPPIIGGGDSVAPVEKVGLGDKMSHISPGGGASLELLEGKTLPGGLVFDDA 601
            + V   AIPDGWMGLD+GPD++  F++ L   +T+IWNGPMG FEFDKFA G  AIA  LA+LSGKG   IIGGGDSVA VEK GL +KMSHIS GGGASLELLEGK LPG    DDA
Sbjct:  284 QTVSIDAIPDGWMGLDIGPDSINLFQDALADCQTVIWNGPMGVFEFDKFAAGTNAIATTLADLSGKGCCTIIGGGDSVAAVEKAGLAEKMSHISTGGGASLELLEGKVLPGVAALDDA 401          
BLAST of CF832949 vs. ExPASy Swiss-Prot
Match: PGK_THEEB (Phosphoglycerate kinase OS=Thermosynechococcus elongatus (strain BP-1) GN=pgk PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 6.477e-40
Identity = 81/118 (68.64%), Postives = 93/118 (78.81%), Query Frame = -1
Query:  248 KVVPATAIPDGWMGLDVGPDALKSFREGLDSTKTIIWNGPMGGFEFDKFAGGPEAIAKKLAELSGKGVPPIIGGGDSVAPVEKVGLGDKMSHISPGGGASLELLEGKTLPGGLVFDDA 601
            +VV   AIPD WMGLD+GP ++K F+E L   KT+IWNGPMG FEFD+FA G EAIA+ LAEL+ +GV  IIGGGDSVA VEKVG+ D+MSHIS GGGASLELLEGK LPG    DDA
Sbjct:  283 QVVSIEAIPDDWMGLDIGPASVKRFQEALQDCKTVIWNGPMGVFEFDQFAKGTEAIARYLAELTSQGVCTIIGGGDSVAAVEKVGVADRMSHISTGGGASLELLEGKQLPGIAALDDA 400          
BLAST of CF832949 vs. ExPASy Swiss-Prot
Match: PGK_SYNPW (Phosphoglycerate kinase OS=Synechococcus sp. (strain WH7803) GN=pgk PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.105e-39
Identity = 81/118 (68.64%), Postives = 90/118 (76.27%), Query Frame = -1
Query:  248 KVVPATAIPDGWMGLDVGPDALKSFREGLDSTKTIIWNGPMGGFEFDKFAGGPEAIAKKLAELSGKGVPPIIGGGDSVAPVEKVGLGDKMSHISPGGGASLELLEGKTLPGGLVFDDA 601
            +V   TAIPDGWMGLD+GPDA+K F+  L   +T+IWNGPMG FEF+KFA G  AIA  LAELS KG   IIGGGDSVA VEK GL +KMSHIS GGGASLELLEGK LPG    +DA
Sbjct:  284 QVADVTAIPDGWMGLDIGPDAVKVFQAALADCQTVIWNGPMGVFEFEKFATGTNAIATTLAELSAKGCCTIIGGGDSVAAVEKAGLAEKMSHISTGGGASLELLEGKVLPGVAALNDA 401          
BLAST of CF832949 vs. ExPASy Swiss-Prot
Match: PGK_CYAP7 (Phosphoglycerate kinase OS=Cyanothece sp. (strain PCC 7424) GN=pgk PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.105e-39
Identity = 80/118 (67.80%), Postives = 90/118 (76.27%), Query Frame = -1
Query:  248 KVVPATAIPDGWMGLDVGPDALKSFREGLDSTKTIIWNGPMGGFEFDKFAGGPEAIAKKLAELSGKGVPPIIGGGDSVAPVEKVGLGDKMSHISPGGGASLELLEGKTLPGGLVFDDA 601
            K V    IPDGWMGLD+GPD++K F++ L   K++IWNGPMG FEFDKFA G EAIA  L  L+GKG   IIGGGDSVA VEKVG+ DKMSHIS GGGASLELLEGK LPG    D+A
Sbjct:  284 KTVKIEEIPDGWMGLDIGPDSVKLFQDALADCKSVIWNGPMGVFEFDKFAKGTEAIAYTLETLTGKGATTIIGGGDSVAAVEKVGVADKMSHISTGGGASLELLEGKVLPGIAALDEA 401          
BLAST of CF832949 vs. ExPASy Swiss-Prot
Match: PGK_ANASP (Phosphoglycerate kinase OS=Anabaena sp. (strain PCC 7120) GN=pgk PE=1 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 1.884e-39
Identity = 79/111 (71.17%), Postives = 87/111 (78.38%), Query Frame = -1
Query:  248 IPDGWMGLDVGPDALKSFREGLDSTKTIIWNGPMGGFEFDKFAGGPEAIAKKLAELSGKGVPPIIGGGDSVAPVEKVGLGDKMSHISPGGGASLELLEGKTLPGGLVFDDA 580
            IPDGWMGLD+GPD++K F+  L  TKT+IWNGPMG FEFDKFA G EAIA  LAE+   G   IIGGGDSVA VEKVGL D+MSHIS GGGASLELLEGK LPG    D+A
Sbjct:  290 IPDGWMGLDIGPDSVKVFQAALADTKTVIWNGPMGVFEFDKFAAGTEAIAHTLAEIGKTGTTTIIGGGDSVAAVEKVGLADQMSHISTGGGASLELLEGKVLPGIAALDEA 400          
BLAST of CF832949 vs. ExPASy Swiss-Prot
Match: PGK_SYNP2 (Phosphoglycerate kinase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=pgk PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.461e-39
Identity = 82/118 (69.49%), Postives = 89/118 (75.42%), Query Frame = -1
Query:  248 KVVPATAIPDGWMGLDVGPDALKSFREGLDSTKTIIWNGPMGGFEFDKFAGGPEAIAKKLAELSGKGVPPIIGGGDSVAPVEKVGLGDKMSHISPGGGASLELLEGKTLPGGLVFDDA 601
            K V   AIPDGWMGLD+G D++K F+E LD   T IWNGPMG FEFDKFA G EAIAK LA  +  G   IIGGGDSVA VEKVG+ DKMSHIS GGGASLELLEGK LPG +  DDA
Sbjct:  281 KTVSVDAIPDGWMGLDIGADSVKVFQEALDGCGTAIWNGPMGVFEFDKFAVGTEAIAKTLAGATETGTVTIIGGGDSVAAVEKVGVADKMSHISTGGGASLELLEGKELPGIVALDDA 398          
BLAST of CF832949 vs. ExPASy Swiss-Prot
Match: PGK_SYNSC (Phosphoglycerate kinase OS=Synechococcus sp. (strain CC9605) GN=pgk PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 3.214e-39
Identity = 79/112 (70.54%), Postives = 88/112 (78.57%), Query Frame = -1
Query:  248 AIPDGWMGLDVGPDALKSFREGLDSTKTIIWNGPMGGFEFDKFAGGPEAIAKKLAELSGKGVPPIIGGGDSVAPVEKVGLGDKMSHISPGGGASLELLEGKTLPGGLVFDDA 583
            AIPDGWMGLD+GPD++K F+E L   +T+IWNGPMG FEFDKFA G  +IA  LA+LSGKG   IIGGGDSVA VEK GL +KMSHIS GGGASLELLEGK LPG    D A
Sbjct:  290 AIPDGWMGLDIGPDSIKVFQEALADCQTVIWNGPMGVFEFDKFATGTNSIATTLADLSGKGCCTIIGGGDSVAAVEKAGLAEKMSHISTGGGASLELLEGKVLPGVAALDAA 401          
The following BLAST results are available for this feature:
BLAST of CF832949 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGK_NOSP71.305e-4072.97Phosphoglycerate kinase OS=Nostoc punctiforme (str... [more]
PGK_ANAVT3.797e-4072.07Phosphoglycerate kinase OS=Anabaena variabilis (st... [more]
PGK_PROMM4.959e-4067.80Phosphoglycerate kinase OS=Prochlorococcus marinus... [more]
PGK_PROM34.959e-4067.80Phosphoglycerate kinase OS=Prochlorococcus marinus... [more]
PGK_THEEB6.477e-4068.64Phosphoglycerate kinase OS=Thermosynechococcus elo... [more]
PGK_SYNPW1.105e-3968.64Phosphoglycerate kinase OS=Synechococcus sp. (stra... [more]
PGK_CYAP71.105e-3967.80Phosphoglycerate kinase OS=Cyanothece sp. (strain ... [more]
PGK_ANASP1.884e-3971.17Phosphoglycerate kinase OS=Anabaena sp. (strain PC... [more]
PGK_SYNP22.461e-3969.49Phosphoglycerate kinase OS=Synechococcus sp. (stra... [more]
PGK_SYNSC3.214e-3970.54Phosphoglycerate kinase OS=Synechococcus sp. (stra... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02L15_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02L15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832949 ID=CF832949; Name=CF832949; organism=Citrus sinensis; type=EST; length=601bp
TTTTTTTTTTTTTTTTTCCCCGAAACTTAAACCCTTACCATCACAATGTT
CCAAAAGGGGATCAAATCCAAAAAAATGCCTCCCCATTGATGCCTGGGAA
AAAAAATTTATTTTTACTCTTACAGCATCTACAAAACCAACTCTAATGAT
AAAGTTTAACTTTTATCCCCTCGGGGGTGACAACCACCCACACATACAAC
TCTGGAAATGGCCCATTTAAAAAAGGAAAGCCCAGGAACTGGGTTTAAGC
ATCATCAAAAACAAGCCCCCCAGGGAGTGTTTTGCCCTCAAGGAGCTCTA
AGCTGGCTCCCCCTCCAGGGGAAATATGGCTCATCTTGTCACCCAAACCA
ACCTTCTCTACGGGTGCAACTGAGTCACCCCCCCCAATGATGGGGGGCAC
TCCCTTCCCGCTGAGCTCCGCAAGCTTTTTGGCAATTGCCTCAGGGCCAC
CAGCAAATTTATCAAATTCAAACCCCCCCATAGGTCCATTCCAAATGATG
GTTTTAGTAGAATCCAAACCTTCCCTGAATGACTTGAGGGCATCAGGGCC
AACATCCAAGCCCATCCAACCATCTGGAATTGCCGTTGCTGGCACCACCT
T
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