CF832975

Overview
NameCF832975
Unique NameCF832975
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length370
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832975 vs. ExPASy Swiss-Prot
Match: METK1_BOVIN (S-adenosylmethionine synthetase isoform type-1 OS=Bos taurus GN=MAT1A PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 7.137e-38
Identity = 71/122 (58.20%), Postives = 95/122 (77.87%), Query Frame = 3
Query:    3 KRPEDIGAGDQGHMFGYATDETPEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNP 368
            +  ED+GAGDQG MFGYATDET E MPL+ +LA +L AR+ E+R++    WL+PD KTQVTV+Y  DNGA++P+RVHTV+IS QH+E +T +++   LKE VI+ V+P +YLDE TI+HL P
Sbjct:  126 RNEEDVGAGDQGLMFGYATDETEECMPLTIMLAHRLNARMAELRRSGQLPWLQPDSKTQVTVQYTQDNGAVIPMRVHTVVISVQHNEDITLEDMRRALKEQVIRAVVPARYLDEDTIYHLQP 247          
BLAST of CF832975 vs. ExPASy Swiss-Prot
Match: METK1_PETCR (S-adenosylmethionine synthetase 1 (Fragment) OS=Petroselinum crispum GN=SMS-1 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 6.042e-37
Identity = 69/77 (89.61%), Postives = 74/77 (96.10%), Query Frame = 3
Query:  138 NSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNP 368
            N TC+WLRPDGKTQVTVEY ND+GAMVP+RVHT+LISTQHDETVTNDEIAADLKEHVIKPV+PE YLDEKTIFHLNP
Sbjct:    1 NGTCAWLRPDGKTQVTVEYQNDHGAMVPIRVHTILISTQHDETVTNDEIAADLKEHVIKPVVPENYLDEKTIFHLNP 77          
BLAST of CF832975 vs. ExPASy Swiss-Prot
Match: METK_NEUCR (S-adenosylmethionine synthetase OS=Neurospora crassa GN=eth-1 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 8.724e-36
Identity = 67/121 (55.37%), Postives = 91/121 (75.21%), Query Frame = 3
Query:    6 RPEDIGAGDQGHMFGYATDETPEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNP 368
            R E++GAGDQG MFGYATDETPE  PL+ + A KL A ++  R++ +  WLRPD KTQVT+EY +DNGA+VP+RV TV++S QH   +T +E+  ++ E +IK  IP KYLDEKT++H+ P
Sbjct:  125 RLENLGAGDQGIMFGYATDETPELFPLTLLFAHKLNAAMSAARRDGSLPWLRPDTKTQVTIEYKHDNGAVVPLRVDTVVVSAQHAPEITTEELRKEILEKIIKTTIPAKYLDEKTVYHIQP 245          
BLAST of CF832975 vs. ExPASy Swiss-Prot
Match: METK_ASCIM (S-adenosylmethionine synthetase OS=Ascobolus immersus PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.944e-35
Identity = 66/122 (54.10%), Postives = 91/122 (74.59%), Query Frame = 3
Query:    3 KRPEDIGAGDQGHMFGYATDETPEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNP 368
            K  E++GAGDQG MFGYATDETPE +PL+ +LA +L A + + R++ +  WLRPD KTQVT+EY +D GA+VP +V TV++S QH E +T +E+  ++ E +IK  IP KYLDE T+FH+ P
Sbjct:  121 KALEELGAGDQGIMFGYATDETPELLPLTLLLAHQLNANMAKARRDGSLPWLRPDTKTQVTIEYEHDGGAVVPKKVKTVVVSAQHSEDITTEELRKEILEKIIKTTIPAKYLDEDTVFHIQP 242          
BLAST of CF832975 vs. ExPASy Swiss-Prot
Match: METK4_CAEEL (Probable S-adenosylmethionine synthetase 4 OS=Caenorhabditis elegans GN=sams-4 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.944e-35
Identity = 69/122 (56.56%), Postives = 92/122 (75.41%), Query Frame = 3
Query:    3 KRPEDIGAGDQGHMFGYATDETPEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNP 368
            K  +D+GAGDQG MFGYATDET E MPL+ +L+ KL  +L E+R++    W+RPD KTQVT+EY ++ GA VP+RVHTV+ISTQH   ++ D++  +L E VIK VIP   +D+KTI+HLNP
Sbjct:  113 KDSDDVGAGDQGIMFGYATDETEEAMPLTLLLSHKLNRKLHELRRSGELEWVRPDSKTQVTIEYASEGGACVPLRVHTVVISTQHSPDISLDDLRKELIEKVIKAVIPANLIDDKTIYHLNP 234          
BLAST of CF832975 vs. ExPASy Swiss-Prot
Match: METK3_CAEEL (Probable S-adenosylmethionine synthetase 3 OS=Caenorhabditis elegans GN=sams-3 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.944e-35
Identity = 69/122 (56.56%), Postives = 92/122 (75.41%), Query Frame = 3
Query:    3 KRPEDIGAGDQGHMFGYATDETPEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNP 368
            K  +D+GAGDQG MFGYATDET E MPL+ +L+ KL  +L E+R++    W+RPD KTQVT+EY ++ GA VP+RVHTV+ISTQH   ++ D++  +L E VIK VIP   +D+KTI+HLNP
Sbjct:  113 KDSDDVGAGDQGIMFGYATDETEEAMPLTLLLSHKLNRKLHELRRSGELEWVRPDSKTQVTIEYASEGGACVPLRVHTVVISTQHSPDISLDDLRKELIEKVIKAVIPANLIDDKTIYHLNP 234          
BLAST of CF832975 vs. ExPASy Swiss-Prot
Match: METK1_CAEEL (Probable S-adenosylmethionine synthetase 1 OS=Caenorhabditis elegans GN=sams-1 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.645e-34
Identity = 67/122 (54.92%), Postives = 90/122 (73.77%), Query Frame = 3
Query:    3 KRPEDIGAGDQGHMFGYATDETPEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNP 368
            K  ED+GAGDQG MFGYATDET E MPL+ +L+ K+ A L ++R+N T  W+RPD K+QVT+EY + +GA +P+RVHTV++STQH   VT +++   +   VIK VIP   LDE T+FH+NP
Sbjct:  112 KDGEDVGAGDQGIMFGYATDETEETMPLTLILSHKINAELHKLRRNGTLPWVRPDSKSQVTIEYESRHGATIPLRVHTVVVSTQHSPDVTLEKLRETILADVIKKVIPASLLDESTVFHINP 233          
BLAST of CF832975 vs. ExPASy Swiss-Prot
Match: METK_SCHPO (S-adenosylmethionine synthetase OS=Schizosaccharomyces pombe GN=sam1 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 6.252e-34
Identity = 61/122 (50.00%), Postives = 93/122 (76.23%), Query Frame = 3
Query:    3 KRPEDIGAGDQGHMFGYATDETPEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNP 368
            K  E++GAGDQG MFGYATDETPE +PL+ +LA KL A ++  R++ +  WLRPD KTQVT+EY  +NGA++P RV T+++S QH ++++ +++ +++ E +IKP +P   LDEKT++H+ P
Sbjct:  112 KALEELGAGDQGIMFGYATDETPEKLPLTILLAHKLNAAMSVARRDGSLPWLRPDTKTQVTIEYEEENGAVIPRRVDTIVVSAQHADSISTEDLRSEILEKIIKPTVPAHLLDEKTVYHIQP 233          
BLAST of CF832975 vs. ExPASy Swiss-Prot
Match: METK_CLOPS (S-adenosylmethionine synthetase OS=Clostridium perfringens (strain SM101 / Type A) GN=metK PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 2.376e-33
Identity = 70/117 (59.83%), Postives = 86/117 (73.50%), Query Frame = 3
Query:   18 IGAGDQGHMFGYATDETPEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNP 368
            +GAGDQG MFG+AT+ET EFMP    +A +L  RLTEVRKN T  +LRPDGKTQVTVEY ND     PVR+  ++ISTQH   V+ ++I ADL EHVIK VIP + LDE T +++NP
Sbjct:  123 VGAGDQGMMFGFATNETEEFMPAPIAMAHRLSRRLTEVRKNGTLPYLRPDGKTQVTVEYENDK----PVRIDAIVISTQHGPEVSQEQIQADLMEHVIKAVIPAELLDENTKYYINP 235          
BLAST of CF832975 vs. ExPASy Swiss-Prot
Match: METK_CLOP1 (S-adenosylmethionine synthetase OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=metK PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 2.376e-33
Identity = 70/117 (59.83%), Postives = 86/117 (73.50%), Query Frame = 3
Query:   18 IGAGDQGHMFGYATDETPEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNP 368
            +GAGDQG MFG+AT+ET EFMP    +A +L  RLTEVRKN T  +LRPDGKTQVTVEY ND     PVR+  ++ISTQH   V+ ++I ADL EHVIK VIP + LDE T +++NP
Sbjct:  123 VGAGDQGMMFGFATNETEEFMPAPIAMAHRLSRRLTEVRKNGTLPYLRPDGKTQVTVEYENDK----PVRIDAIVISTQHGPEVSQEQIQADLMEHVIKAVIPAELLDENTKYYINP 235          
The following BLAST results are available for this feature:
BLAST of CF832975 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK1_BOVIN7.137e-3858.20S-adenosylmethionine synthetase isoform type-1 OS=... [more]
METK1_PETCR6.042e-3789.61S-adenosylmethionine synthetase 1 (Fragment) OS=Pe... [more]
METK_NEUCR8.724e-3655.37S-adenosylmethionine synthetase OS=Neurospora cras... [more]
METK_ASCIM1.944e-3554.10S-adenosylmethionine synthetase OS=Ascobolus immer... [more]
METK4_CAEEL1.944e-3556.56Probable S-adenosylmethionine synthetase 4 OS=Caen... [more]
METK3_CAEEL1.944e-3556.56Probable S-adenosylmethionine synthetase 3 OS=Caen... [more]
METK1_CAEEL1.645e-3454.92Probable S-adenosylmethionine synthetase 1 OS=Caen... [more]
METK_SCHPO6.252e-3450.00S-adenosylmethionine synthetase OS=Schizosaccharom... [more]
METK_CLOPS2.376e-3359.83S-adenosylmethionine synthetase OS=Clostridium per... [more]
METK_CLOP12.376e-3359.83S-adenosylmethionine synthetase OS=Clostridium per... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02M06_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02M06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832975 ID=CF832975; Name=CF832975; organism=Citrus sinensis; type=EST; length=370bp
CAAAGCGCCCTGAGGACATTGGTGCTGGTGACCAGGGCCATATGTTTGGT
TATGCTACTGATGAGACCCCTGAATTTATGCCTTTGAGCCATGTCCTTGC
CACCAAACTTGGTGCTCGTCTCACGGAGGTTAGGAAGAATAGTACCTGCT
CTTGGCTAAGGCCCGATGGGAAGACCCAGGTCACTGTTGAGTACTACAAT
GACAATGGTGCCATGGTCCCAGTCCGTGTCCACACGGTCCTCATTTCAAC
CCAGCATGATGAGACTGTCACAAATGATGAAATTGCTGCTGACCTTAAGG
AGCACGTCATTAAGCCTGTCATCCCCGAGAAGTACCTTGATGAGAAGACC
ATCTTCCACCTTAATCCATC
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