CF833024

Overview
NameCF833024
Unique NameCF833024
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length771
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF833024 vs. ExPASy Swiss-Prot
Match: TKT1_ECOLI (Transketolase 1 OS=Escherichia coli (strain K12) GN=tktA PE=1 SV=5)

HSP 1 Score: 106.301 bits (264), Expect = 1.925e-22
Identity = 62/152 (40.79%), Postives = 85/152 (55.92%), Query Frame = -1
Query:  313 PSILALSRQKLPHLAGTS--IDGVEKGAYIISDNSSGNKPDVILIGTGSXXXXXXXXXXXLRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKEV 762
            P+ L LSRQ L     T   +  + +G Y++ D     +P++I I TGS           L   G   RVVS  S + FD+Q  AY+ESVLP AV+ARV++EAG    W K VG  G  +G+  FG SAPA  +++EFG T + V+  AKE+
Sbjct:  513 PTALILSRQNLAQQERTEEQLANIARGGYVLKD--CAGQPELIFIATGSEVELAVAAYEKLTAEGVKARVVSMPSTDAFDKQDAAYRESVLPKAVTARVAVEAGIADYWYKYVGLNGAIVGMTTFGESAPAELLFEEFGFTVDNVVAKAKEL 662          
BLAST of CF833024 vs. ExPASy Swiss-Prot
Match: TKTP_RALEH (Transketolase, plasmid OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=cbbTP PE=3 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 8.944e-20
Identity = 61/150 (40.67%), Postives = 83/150 (55.33%), Query Frame = -1
Query:  319 PSILALSRQKLPHLAGTSID--GVEKGAYIISDNSSGNKPDVILIGTGSXXXXXXXXXXXLRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAK 762
            P+ L LSRQ L      +     + +G Y++ D  +   P V+LI TGS           L   G A RVVS    ELF  Q  AY++SVLP  +  R+S+EAG+T+ W  +VG +G A+GID FG SAPA  +Y+ FG+T   V  AA+
Sbjct:  519 PTCLVLSRQALMPFERDAAQRADIARGGYVLRDVPA---PRVVLIATGSEVEIAARAALDLADAGIAARVVSMPCVELFYAQDAAYRDSVLPPGLP-RISVEAGATWYWRGVVGEQGLALGIDSFGESAPAEALYQHFGLTPAHVAAAAR 664          
BLAST of CF833024 vs. ExPASy Swiss-Prot
Match: TKTC_RALEH (Transketolase, chromosomal OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=cbbTC PE=3 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 8.944e-20
Identity = 63/150 (42.00%), Postives = 81/150 (54.00%), Query Frame = -1
Query:  319 PSILALSRQKLPHLAGTSIDGVE--KGAYIISDNSSGNKPDVILIGTGSXXXXXXXXXXXLRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAK 762
            PS L LSRQ L           E  +G Y++ D  +   P V+LI TGS           L   G A RVVS    ELF  Q  AY+++VLP  +  RVS+EAG T+ W  +VG +G A+GID FG SAPA  +Y+ FG+T   V  AA+
Sbjct:  519 PSCLVLSRQALMPFERNPAQRAEIARGGYVLRDVPA---PRVVLIATGSEVEIAMRAALDLADAGIAARVVSMPCVELFYAQDVAYRDTVLPPGLP-RVSVEAGGTWFWRGVVGEQGLALGIDTFGESAPAEALYQHFGLTPAHVAAAAR 664          
BLAST of CF833024 vs. ExPASy Swiss-Prot
Match: TKT1_CANAL (Transketolase 1 OS=Candida albicans GN=TKT1 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.944e-20
Identity = 59/149 (39.60%), Postives = 81/149 (54.36%), Query Frame = -1
Query:  316 PSILALSRQKLPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSXXXXXXXXXXXLRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKE 762
            PS++AL+RQ LP L G+SI+   KG Y +    +   PDVI++ +GS           L K G    VVS   +  FD+QSD Y+ SVLP  V   +S+E  STFGW K      +  G++RFGAS  A  +YK F  T E +   A++
Sbjct:  518 PSVIALTRQNLPQLEGSSIENALKGGYTLVKKDN---PDVIIVSSGSEVSISVAASEELAKQGVKANVVSLPDFFTFDQQSDEYRLSVLPDGVPI-LSVEVMSTFGWSKY---SHEQFGLNRFGASGKAADLYKYFEFTPEGIAERAQK 659          
BLAST of CF833024 vs. ExPASy Swiss-Prot
Match: TKT_SINMW (Transketolase OS=Sinorhizobium medicae (strain WSM419) GN=cbbT PE=3 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 1.168e-19
Identity = 64/158 (40.51%), Postives = 91/158 (57.59%), Query Frame = -1
Query:  313 RKRPSILALSRQKLPHLAGTSIDGVEK----GAYIISDNSSGNKPDVILIGTGSXXXXXXXXXXXLR-KGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKEV 771
            +  PS+LALSRQ LP L  T  +G E     GAY++ + + GN+ D+ ++ TGS           L+ + G A  VVS   WE F+ Q  AY+  VL  A   R++IEA    GW++ +G  G  +G+  FGASAPAG +Y+ FGITA+ V+  A E+
Sbjct:  514 KNTPSVLALSRQALPMLRRT--EGNENQSALGAYVLRE-ARGNR-DITILATGSEVEIAVAAAERLQAEEGIAAAVVSMPCWEKFEVQDLAYRRKVLGDA--PRIAIEAAGRLGWDRWMGPDGAFVGMTGFGASAPAGDLYRHFGITADHVVAEALEL 665          
BLAST of CF833024 vs. ExPASy Swiss-Prot
Match: TKT_SCHPO (Probable transketolase OS=Schizosaccharomyces pombe GN=SPBC2G5.05 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.291e-18
Identity = 57/155 (36.77%), Postives = 87/155 (56.13%), Query Frame = -1
Query:  301 PSILALSRQKLPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSXXXXXXXXXXXLR-KGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKEVC*AW 762
            PSILAL+RQ LP L  ++I+   KG Y++ +N    + D+ L+GTGS           L  +     RVVS   WE+F++Q ++Y+ SV+P  + A +S+E  +T GW + V    +A G+  FG S PA K+Y++F  T   V   AK+   A+
Sbjct:  524 PSILALTRQNLPQLENSTIENALKGGYVMLEN---KEADITLVGTGSEVSLCIDTVKTLETEYNLKARVVSLPCWEVFEQQPESYRLSVIPDGIPA-MSVEVWATNGWRRYV---HEAFGMHTFGDSGPAPKLYEKFHFTTSGVAQRAKKTVDAY 671          
BLAST of CF833024 vs. ExPASy Swiss-Prot
Match: TKT_BUCAI (Transketolase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=tkt PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.203e-18
Identity = 58/145 (40.00%), Postives = 78/145 (53.79%), Query Frame = -1
Query:  334 PSILALSRQKLPHLAGTS--IDGVEKGAYIISDNSSGNKPDVILIGTGSXXXXXXXXXXXLRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAV 762
            P+ L LSRQ L     +S  ++ +  GAYI+ D  S  + D+I I TGS           L   G +VRVVS     +FD Q  +YKE VLP  V+ RV++EA     W K VG  G  IG+  FG SAPA  ++K+FG T + +
Sbjct:  513 PTALILSRQNLDQFERSSEQLENISYGAYILYD--SKKRLDIIFISTGSELNVTLIAAKKLASLGYSVRVVSMPCTSVFDRQDASYKEFVLPTYVAKRVAVEASIEDFWYKYVGINGVIIGMKTFGESAPAEDLFKKFGFTVQNI 655          
BLAST of CF833024 vs. ExPASy Swiss-Prot
Match: TKT1_YEAST (Transketolase 1 OS=Saccharomyces cerevisiae GN=TKL1 PE=1 SV=4)

HSP 1 Score: 92.8189 bits (229), Expect = 2.203e-18
Identity = 60/149 (40.27%), Postives = 82/149 (55.03%), Query Frame = -1
Query:  316 PSILALSRQKLPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSXXXXXXXXXXXLRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKE 762
            PSI+ALSRQ LP L G+SI+   KG Y++ D ++   PD+IL+ TGS           L       RVVS   +  FD+Q   Y+ SVLP  V   +S+E  +T  W K      ++ GIDRFGAS  A +++K FG T E V   A++
Sbjct:  521 PSIIALSRQNLPQLEGSSIESASKGGYVLQDVAN---PDIILVATGSEVSLSVEAAKTLAAKNIKARVVSLPDFFTFDKQPLEYRLSVLPDNVPI-MSVEVLATTCWGKYA---HQSFGIDRFGASGKAPEVFKFFGFTPEGVAERAQK 662          
BLAST of CF833024 vs. ExPASy Swiss-Prot
Match: TKT_RHIME (Transketolase OS=Rhizobium meliloti GN=cbbT PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.908e-18
Identity = 62/158 (39.24%), Postives = 87/158 (55.06%), Query Frame = -1
Query:  313 RKRPSILALSRQKLPHLAGTSIDGVEK----GAYIISDNSSGNKPDVILIGTGSXXXXXXXXXXXLRKGGK-AVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKEV 771
            +  PS+ ALSRQ LP L  T  DG E     GAY++ + + G++ D+ L+ TGS           L+   + A  VVS   WE F+ Q  AY   VL  A   R++IEA    GW++ +G     +G+  FGASAPAG +Y+ FGITA+ V+  A E+
Sbjct:  514 KNTPSVFALSRQALPMLRRT--DGNENLSALGAYVLRE-ARGDR-DITLLATGSEVEIAVAAAERLQAEERIAAAVVSMPCWEKFEAQDAAYHRQVLGDA--PRIAIEAAGRLGWDRWMGPDSAFVGMTGFGASAPAGDLYRHFGITADHVVAEALEL 665          
BLAST of CF833024 vs. ExPASy Swiss-Prot
Match: TKT_BUCAP (Transketolase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=tkt PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.908e-18
Identity = 58/151 (38.41%), Postives = 83/151 (54.97%), Query Frame = -1
Query:  319 PSILALSRQKLPHLAGTS--IDGVEKGAYIISDNSSGNKP-DVILIGTGSXXXXXXXXXXXLRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAK 762
            P+ L LSRQ L   +  +  I  +  GAYI+ D+    KP D+I I TGS           +   G +VRVVS  S  +FD Q+  YKES+LP+ ++ R+ IEA     W K  GS+G  IG++ FG SA    ++K+FG T E ++  +K
Sbjct:  513 PTALILSRQNLFQFSRNNEQIKNISYGAYILYDSK---KPIDIIFISTGSELQITLTSAKKIAALGYSVRVVSMPSNNVFDRQNIDYKESILPSYITKRIVIEASIKDFWYKYAGSEGLIIGMETFGESASEEVLFKKFGFTVENIVNKSK 660          
The following BLAST results are available for this feature:
BLAST of CF833024 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
TKT1_ECOLI1.925e-2240.79Transketolase 1 OS=Escherichia coli (strain K12) G... [more]
TKTP_RALEH8.944e-2040.67Transketolase, plasmid OS=Ralstonia eutropha (stra... [more]
TKTC_RALEH8.944e-2042.00Transketolase, chromosomal OS=Ralstonia eutropha (... [more]
TKT1_CANAL8.944e-2039.60Transketolase 1 OS=Candida albicans GN=TKT1 PE=3 S... [more]
TKT_SINMW1.168e-1940.51Transketolase OS=Sinorhizobium medicae (strain WSM... [more]
TKT_SCHPO1.291e-1836.77Probable transketolase OS=Schizosaccharomyces pomb... [more]
TKT_BUCAI2.203e-1840.00Transketolase OS=Buchnera aphidicola subsp. Acyrth... [more]
TKT1_YEAST2.203e-1840.27Transketolase 1 OS=Saccharomyces cerevisiae GN=TKL... [more]
TKT_RHIME4.908e-1839.24Transketolase OS=Rhizobium meliloti GN=cbbT PE=3 S... [more]
TKT_BUCAP4.908e-1838.41Transketolase OS=Buchnera aphidicola subsp. Schiza... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02N09_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02N09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833024 ID=CF833024; Name=CF833024; organism=Citrus sinensis; type=EST; length=771bp
TTTTTTTTGATGATGGACGAGCAAATTTGCATCAAAATCAACAGGAAACA
TTACAAATCTCAAGATAGGTCCAAGAGTTTGATACAAATTCATGAACATG
AACAAGCCCTACTCTCTCTCCCTCTCTCTCTCTTCAATCTACGATGCTCT
GCAGTGGAATAATAAGCAAAAGGAAGAAAAATAATCTTGCTTTTATTAAA
ACAAGAGAGACCATAATGAAGCAACTCTCTTGGGAATGGTCTCTTCACTG
TAATCACCAATTCCCAAATGCATATGGAATAATAAGAAGTTTTTGACTAA
CCAAGCTTAGCAGACTTCTTTGGCTGCAGTGATAACAGCCTCCGCGGTGA
TACCAAACTCCTTGTATATTTTGCCTGCTGGTGCACTAGCACCGAATCGG
TCAATGCCGATGGCCTTTCCTTTGCTTCCAACAATCTTCTCCCACCCAAA
TGTAGATCCAGCTTCAATGCTAACTCTAGCTGAGACAGCAGCCGGAAGCA
CACTTTCCTTGTAGGCATCTGATTGCTCATCAAAAAGCTCCCAAGAAACA
AAGGAGACAACTCTTACAGCCTTTCCTCCCTTTCTAAGTTCCTCAGCTGC
TTTGGCGGCAATTTCCAATTCAGAACCAGTTCCAATCAAAATGACATCAG
GTTTGTTACCAGAAGAATTGTCCGAAATTATGTAGGCACCCTTTTCAACA
CCATCAATGGAAGTTCCAGCAAGGTGGGGAAGCTTTTGCCGGGAAAGGGC
AAGGATGGACGGTCTCTTCCT
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