CF833068

Overview
NameCF833068
Unique NameCF833068
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length633
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF833068 vs. ExPASy Swiss-Prot
Match: NLT2B_ORYSJ (Non-specific lipid-transfer protein 2B OS=Oryza sativa subsp. japonica GN=LTP2-B PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.272e-20
Identity = 52/113 (46.02%), Postives = 70/113 (61.95%), Query Frame = -1
Query:  265 LVLVCLMGSAFVS----TKAQVTCRTVVNDLSPCISYVSYGGAVTTNCCNGVRTLYNAARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRV 591
            LVLV L+ +  ++    T A ++C  V + +SPC+SY   G   +  CC+GVR+L +AA +TADR+T C CLK     IS      G AA +P KCG++IPY ISPS DCS V
Sbjct:    6 LVLVALVAALLLAGPHTTMAAISCGQVNSAVSPCLSYARGGSGPSAACCSGVRSLNSAATTTADRRTACNCLKNVAGSIS--GLNAGNAASIPSKCGVSIPYTISPSIDCSSV 116          
BLAST of CF833068 vs. ExPASy Swiss-Prot
Match: NLTP2_TOBAC (Non-specific lipid-transfer protein 2 OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.662e-20
Identity = 48/93 (51.61%), Postives = 65/93 (69.89%), Query Frame = -1
Query:  262 VTCRTVVNDLSPCISYVSYGGAVTTNCCNGVRTLYNAARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRVQ 540
            ++C  V + L+PC+ Y+   G + + CC GV+ L  AA+S +DR+T CTCLK A + I      +G AAGLPG CG+NIPY+ISPSTDCS+VQ
Sbjct:   25 LSCGQVQSGLAPCLPYLQGRGPLGS-CCGGVKGLLGAAKSLSDRKTACTCLKSAANAIK--GIDMGKAAGLPGACGVNIPYKISPSTDCSKVQ 114          
BLAST of CF833068 vs. ExPASy Swiss-Prot
Match: NLTP_SPIOL (Non-specific lipid-transfer protein OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 2.170e-20
Identity = 51/108 (47.22%), Postives = 71/108 (65.74%), Query Frame = -1
Query:  265 VLVCLMGSAFVSTKAQVTCRTVVNDLSPCISYVSYGGAVTTNCCNGVRTLYNAARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRV 588
            VL+C++ +A  + +A +TC  V + L+PCI Y+  GG +   CC G++ L  AA +T DR+T C CLK A + I    Y  G AAGLPG CG++IPY ISPST+C+ V
Sbjct:   13 VLLCIVVAAPYA-EAGITCGMVSSKLAPCIGYLK-GGPLGGGCCGGIKALNAAAATTPDRKTACNCLKSAANAIKGINY--GKAAGLPGMCGVHIPYAISPSTNCNAV 116          
BLAST of CF833068 vs. ExPASy Swiss-Prot
Match: NLTP_GERHY (Non-specific lipid-transfer protein OS=Gerbera hybrida PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.834e-20
Identity = 51/111 (45.95%), Postives = 71/111 (63.96%), Query Frame = -1
Query:  265 CILVLVCLMGSAFVSTKAQVTCRTVVNDLSPCISYVSYGGAVTTNCCNGVRTLYNAARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRV 597
            C+ V  C++ SA  S    ++C  V + L PC  Y++ GG V   CCNGVR L NAA++T DRQT C CLK  ++  + TR  L  A  LPGKCG++I Y+I+P+ DCS++
Sbjct:   10 CVAV-ACMVFSA--SYADAISCGQVTSGLVPCFGYLAAGGPVPPACCNGVRGLNNAAKTTPDRQTACGCLKGILA--ANTRINLNNANSLPGKCGISIGYKITPNIDCSKI 115          
BLAST of CF833068 vs. ExPASy Swiss-Prot
Match: NLTPB_BRAOT (Non-specific lipid-transfer protein B OS=Brassica oleracea var. italica GN=WAX9B PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.834e-20
Identity = 50/116 (43.10%), Postives = 70/116 (60.34%), Query Frame = -1
Query:  262 LVTGCILVLVCLMGSAFVSTKAQVTCRTVVNDLSPCISYVSYGGAVTTNCCNGVRTLYNAARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRVQ 609
            LV    LVL C++ +  ++T A ++C TV  +L+ CI Y++  G +   CC GV  L N AR+T DRQ  C CL  A +  S+       AAGLP  CG+NIPY+IS ST+C+ V+
Sbjct:    4 LVKLSCLVLACMIVAGPIATNAALSCGTVSGNLAACIGYLTQNGPLPRGCCTGVTNLNNMARTTPDRQQACRCLVGAAN--SFPTLNAARAAGLPKACGVNIPYKISKSTNCNSVR 117          
BLAST of CF833068 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUPE (Non-specific lipid-transfer protein 1 OS=Prunus persica PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.834e-20
Identity = 49/96 (51.04%), Postives = 64/96 (66.67%), Query Frame = -1
Query:  262 VTCRTVVNDLSPCISYVSYGGAVTTNCCNGVRTLYNAARSTADRQTVCTCLKQ---AVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRVQ 540
            +TC  V + L+PCI YV  GGAV   CCNG+R + N AR+T DRQ  C CLKQ   +V G++        AA LPGKCG++IPY+IS ST+C+ V+
Sbjct:    1 ITCGQVSSALAPCIPYVRGGGAVPPACCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNN-----AAALPGKCGVHIPYKISASTNCATVK 91          
BLAST of CF833068 vs. ExPASy Swiss-Prot
Match: NLTP2_BRANA (Non-specific lipid-transfer protein 2 OS=Brassica napus GN=LTP2 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.702e-20
Identity = 51/119 (42.86%), Postives = 72/119 (60.50%), Query Frame = -1
Query:  262 LMKLVTGCILVLVCLMGSAFVSTKAQVTCRTVVNDLSPCISYVSYGGAVTTNCCNGVRTLYNAARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRVQ 618
            LMKL     LVL C++ +  +++ A ++C TV   ++PCI Y++  G +   CC GV  L N AR+T DRQ  C CL  A +  S+       AAGLP  CG+NIPY+IS ST+C+ V+
Sbjct:    4 LMKLAC---LVLACMIVAGPITSNAALSCGTVSGYVAPCIGYLTQNGPLPRGCCTGVTNLNNMARTTPDRQQACRCLVGAAN--SFPTLNAARAAGLPKACGVNIPYKISKSTNCNSVR 117          
BLAST of CF833068 vs. ExPASy Swiss-Prot
Match: NLTP_DAUCA (Non-specific lipid-transfer protein OS=Daucus carota GN=EP2 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.314e-20
Identity = 48/99 (48.48%), Postives = 64/99 (64.65%), Query Frame = -1
Query:  265 STKAQVTCRTVVNDLSPCISYV--SYGGAVTTNCCNGVRTLYNAARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRV 555
            + +A +TC  V   L+PC+ Y+       V   CCN VR L NAAR+T D++T C CLKQ  + +  T   L  AAGLP +CG+NIPY+ISP+TDC+RV
Sbjct:   23 NAEAVLTCGQVTGALAPCLGYLRSQVNVPVPLTCCNVVRGLNNAARTTLDKRTACGCLKQTANAV--TGLNLNAAAGLPARCGVNIPYKISPTTDCNRV 119          
BLAST of CF833068 vs. ExPASy Swiss-Prot
Match: NLTP1_SORBI (Non-specific lipid-transfer protein 1 OS=Sorghum bicolor GN=LTP1 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.314e-20
Identity = 50/119 (42.02%), Postives = 74/119 (62.18%), Query Frame = -1
Query:  265 LMKLVTGCILVLVCLMGSAFVSTKAQVTCRTVVNDLSPCISYV-SYGGAVTTNCCNGVRTLYNAARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRV 618
            + +L     +V   ++  A  +++A ++C  V + ++ C+SY    G A +  CC+GVR+L +AAR+TADR+  C CLK A  GIS      G AA +P KCG+++PY IS STDCSRV
Sbjct:    1 MARLAVAIAVVAAVVVVLAATTSEAAISCGQVSSAIALCLSYARGQGFAPSAGCCSGVRSLNSAARTTADRRAACNCLKNAARGIS--GLNAGNAASIPSKCGVSVPYTISTSTDCSRV 117          
BLAST of CF833068 vs. ExPASy Swiss-Prot
Match: NLTP1_BRANA (Non-specific lipid-transfer protein 1 OS=Brassica napus GN=LTP1 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.314e-20
Identity = 49/116 (42.24%), Postives = 70/116 (60.34%), Query Frame = -1
Query:  262 LVTGCILVLVCLMGSAFVSTKAQVTCRTVVNDLSPCISYVSYGGAVTTNCCNGVRTLYNAARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRVQ 609
            LV    LVL C++ +  ++T A ++C TV  +L+ CI Y++  G +   CC GV  L N AR+T DRQ  C CL  A +  ++       AAGLP  CG+NIPY+IS ST+C+ V+
Sbjct:    4 LVKLSCLVLACMIVAGPIATNAALSCGTVSGNLAACIGYLTQNGPLPRGCCTGVTNLNNMARTTPDRQQACRCLVGAAN--AFPTLNAARAAGLPKACGVNIPYKISKSTNCNSVR 117          
The following BLAST results are available for this feature:
BLAST of CF833068 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
NLT2B_ORYSJ1.272e-2046.02Non-specific lipid-transfer protein 2B OS=Oryza sa... [more]
NLTP2_TOBAC1.662e-2051.61Non-specific lipid-transfer protein 2 OS=Nicotiana... [more]
NLTP_SPIOL2.170e-2047.22Non-specific lipid-transfer protein OS=Spinacia ol... [more]
NLTP_GERHY2.834e-2045.95Non-specific lipid-transfer protein OS=Gerbera hyb... [more]
NLTPB_BRAOT2.834e-2043.10Non-specific lipid-transfer protein B OS=Brassica ... [more]
NLTP1_PRUPE2.834e-2051.04Non-specific lipid-transfer protein 1 OS=Prunus pe... [more]
NLTP2_BRANA3.702e-2042.86Non-specific lipid-transfer protein 2 OS=Brassica ... [more]
NLTP_DAUCA6.314e-2048.48Non-specific lipid-transfer protein OS=Daucus caro... [more]
NLTP1_SORBI6.314e-2042.02Non-specific lipid-transfer protein 1 OS=Sorghum b... [more]
NLTP1_BRANA6.314e-2042.24Non-specific lipid-transfer protein 1 OS=Brassica ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02O15_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02O15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833068 ID=CF833068; Name=CF833068; organism=Citrus sinensis; type=EST; length=633bp
TTTTTTTTTTTTTTTTTAACCATAATAACAAAATGTCACTCCATACACGT
AACTTACAAAATCTTATTCTTTAGTACTTATGGTTGGGACAGAACCTAAC
AAAACATGAGACAACATAAATCCCACCAGATGACGCTAACAACTTCTATT
TAACACTAACACACCATCAAACAGAAGCGCAGCACTCTTATTCTCTCACC
CCATGCTTAATTATCCAAGCACACAGCGTCATAACTGATGGCTACTAGTT
CATCATTCTCACTGCACCCTGCTGCAGTCAGTAGAAGGGCTGATCTGGTA
AGGAATGTTGAGTCCACATTTGCCGGGAAGTCCAGCTGCGAGTCCGAGCT
GGTACCTGGTGTACGAGATTCCACTGACAGCTTGTTTCAAGCACGTACAC
ACGGTCTGACGGTCAGCTGTGGACCGAGCGGCATTGTAGAGTGTCCTCAC
TCCGTTGCAACAGTTCGTCGTCACGGCCCCGCCGTATGACACGTAGGATA
TGCATGGAGACAAGTCATTCACCACCGTGCGGCATGTTACTTGTGCTTTG
GTGGACACGAACGCACTGCCCATCAAGCAAACAAGCACCAAGATGCAGCC
TGTCACAAGTTTCATCAGCATTACGGAGCTAGC
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