CF833083
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF833083 vs. ExPASy Swiss-Prot
Match: KHDR1_RAT (KH domain-containing, RNA-binding, signal transduction-associated protein 1 OS=Rattus norvegicus GN=Khdrbs1 PE=1 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 1.234e-16 Identity = 45/113 (39.82%), Postives = 71/113 (62.83%), Query Frame = -3 Query: 450 KYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLK--DKPGYEHLNEPLHVLVEAEFPEDIINSRLDHAVAILENLLKPVDESLDHYKKQQLRELAMLNG 782 +YP FNFVG+ILGP+GN++KR++ T ++ + G+GS++D KEE+L+ P Y HLN LHV +E P + + HA+ ++ L P + +D ++Q EL+ LNG Sbjct: 166 QYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVP--DMMDDICQEQFLELSYLNG 276
BLAST of CF833083 vs. ExPASy Swiss-Prot
Match: KHDR1_MOUSE (KH domain-containing, RNA-binding, signal transduction-associated protein 1 OS=Mus musculus GN=Khdrbs1 PE=1 SV=2) HSP 1 Score: 87.0409 bits (214), Expect = 1.234e-16 Identity = 45/113 (39.82%), Postives = 71/113 (62.83%), Query Frame = -3 Query: 450 KYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLK--DKPGYEHLNEPLHVLVEAEFPEDIINSRLDHAVAILENLLKPVDESLDHYKKQQLRELAMLNG 782 +YP FNFVG+ILGP+GN++KR++ T ++ + G+GS++D KEE+L+ P Y HLN LHV +E P + + HA+ ++ L P + +D ++Q EL+ LNG Sbjct: 166 QYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVP--DMMDDICQEQFLELSYLNG 276
BLAST of CF833083 vs. ExPASy Swiss-Prot
Match: KHDR1_HUMAN (KH domain-containing, RNA-binding, signal transduction-associated protein 1 OS=Homo sapiens GN=KHDRBS1 PE=1 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 1.234e-16 Identity = 45/113 (39.82%), Postives = 71/113 (62.83%), Query Frame = -3 Query: 450 KYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLK--DKPGYEHLNEPLHVLVEAEFPEDIINSRLDHAVAILENLLKPVDESLDHYKKQQLRELAMLNG 782 +YP FNFVG+ILGP+GN++KR++ T ++ + G+GS++D KEE+L+ P Y HLN LHV +E P + + HA+ ++ L P + +D ++Q EL+ LNG Sbjct: 166 QYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVP--DMMDDICQEQFLELSYLNG 276
BLAST of CF833083 vs. ExPASy Swiss-Prot
Match: KHDR1_CHICK (KH domain-containing, RNA-binding, signal transduction-associated protein 1 OS=Gallus gallus GN=KHDRBS1 PE=2 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 1.234e-16 Identity = 45/113 (39.82%), Postives = 71/113 (62.83%), Query Frame = -3 Query: 450 KYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLK--DKPGYEHLNEPLHVLVEAEFPEDIINSRLDHAVAILENLLKPVDESLDHYKKQQLRELAMLNG 782 +YP FNFVG+ILGP+GN++KR++ T ++ + G+GS++D KEE+L+ P Y HLN LHV +E P + + HA+ ++ L P + +D ++Q EL+ LNG Sbjct: 149 QYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVP--DMMDDICQEQFLELSYLNG 259
BLAST of CF833083 vs. ExPASy Swiss-Prot
Match: BBP_CANGA (Branchpoint-bridging protein OS=Candida glabrata GN=BBP PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 4.690e-16 Identity = 48/116 (41.38%), Postives = 70/116 (60.34%), Query Frame = -3 Query: 435 KYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFPEDIINSRLDHAVAILENLLKPVDESLDHYKKQQLRELAMLNGTLREE 782 +YP NFVG +LGPRG +L++++ + C++ IRGRGSVK+ L PG ++PLH L+ A+ E I N +++ + P E + K+ QLRELA LNGTLRE+ Sbjct: 144 QYPQINFVGLLLGPRGKTLRKMQEDSGCKIAIRGRGSVKEGKTSSDL--PPGAMDFSDPLHCLIIADNEEKIENGIKACRNIVIKAVTSP--EGQNELKRGQLRELAELNGTLRED 255
BLAST of CF833083 vs. ExPASy Swiss-Prot
Match: SF01_HUMAN (Splicing factor 1 OS=Homo sapiens GN=SF1 PE=1 SV=4) HSP 1 Score: 84.7297 bits (208), Expect = 6.126e-16 Identity = 51/119 (42.86%), Postives = 69/119 (57.98%), Query Frame = -3 Query: 435 KYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFPEDIINSRLDHAVAILENLLK---PVDESLDHYKKQQLRELAMLNGTLREE 782 +YP NFVG ++GPRGN+LK +E ++ IRG+GSVK+ + KD +EPLH LV A E++ AV + N+LK E + +K QLRELA LNGTLRE+ Sbjct: 146 EYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEG--KVGRKDGQMLPGEDEPLHALVTANTMENV-----KKAVEQIRNILKQGIETPEDQNDLRKMQLRELARLNGTLRED 257
BLAST of CF833083 vs. ExPASy Swiss-Prot
Match: BBP_SCHPO (Branchpoint-bridging protein OS=Schizosaccharomyces pombe GN=bpb1 PE=1 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 1.045e-15 Identity = 50/119 (42.02%), Postives = 76/119 (63.87%), Query Frame = -3 Query: 435 YPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYE-HLNEPLHVLVEAEFPEDIINSRLDHAVAILENLLK---PVDESLDHYKKQQLRELAMLNGTLREE 779 YP NF+G ++GPRG++LK +EA + ++ IRG+GSV KE K + P ++ E LH LV A+ ED IN HA+ +++N+++ V E + K+ QLR+LA LNGTLR++ Sbjct: 197 YPEINFIGLLIGPRGHTLKDMEAKSGAKIAIRGKGSV----KEGKGRSDPSVRGNMEEDLHCLVTAD-SEDKIN----HAIKLIDNVIQTAASVPEGQNDLKRNQLRQLATLNGTLRDD 306
BLAST of CF833083 vs. ExPASy Swiss-Prot
Match: BBP_YEAST (Branchpoint-bridging protein OS=Saccharomyces cerevisiae GN=MSL5 PE=1 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.365e-15 Identity = 47/119 (39.50%), Postives = 74/119 (62.18%), Query Frame = -3 Query: 435 KYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFPEDIINSRLDHAVAILENL-LKPV--DESLDHYKKQQLRELAMLNGTLREE 782 +YP+ NFVG +LGPRG +L++++ + C++ IRGRGSVK+ L PG + +PLH L+ A+ + ++ + + +N+ +K V E + K+ QLRELA LNGTLRE+ Sbjct: 158 QYPDVNFVGLLLGPRGRTLRKLQEDSNCKIAIRGRGSVKEGKNASDL--PPGAMNFEDPLHCLIIADSED-----KIQKGIKVCQNIVIKAVTSPEGQNDLKRGQLRELAELNGTLRED 269
BLAST of CF833083 vs. ExPASy Swiss-Prot
Match: SF01_MOUSE (Splicing factor 1 OS=Mus musculus GN=Sf1 PE=1 SV=5) HSP 1 Score: 83.1889 bits (204), Expect = 1.782e-15 Identity = 50/119 (42.02%), Postives = 69/119 (57.98%), Query Frame = -3 Query: 435 KYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFPEDIINSRLDHAVAILENLLK---PVDESLDHYKKQQLRELAMLNGTLREE 782 +YP NFVG ++GPRGN+LK +E ++ IRG+GSV++ + KD +EPLH LV A E++ AV + N+LK E + +K QLRELA LNGTLRE+ Sbjct: 146 EYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVEEG--KVGRKDGQMLPGEDEPLHALVTANTMENV-----KKAVEQIRNILKQGIETPEDQNDLRKMQLRELARLNGTLRED 257
BLAST of CF833083 vs. ExPASy Swiss-Prot
Match: BBP_CANAL (Branchpoint-bridging protein OS=Candida albicans GN=BBP PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.971e-14 Identity = 42/117 (35.90%), Postives = 71/117 (60.68%), Query Frame = -3 Query: 438 YPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFPEDIINSRLDHAVAILENLLKPV---DESLDHYKKQQLRELAMLNGTLRE 779 YP+ NFVG ++GPRGN+LK+++ + R+ IRG+GSVK+ + + + LHVL+ A+ P ++ AV ++ ++ + + ++ K+ QL+ELA+LNGTLRE Sbjct: 159 YPDINFVGFLIGPRGNTLKKLQEDSGARLQIRGKGSVKEGKSSDGFGSSQTGTDIQDDLHVLITADSP-----LKISKAVKLVNEIIDKLIFSPQGMNFMKRDQLKELAVLNGTLRE 270 The following BLAST results are available for this feature:
BLAST of CF833083 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 46
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Sequences
The
following sequences are available for this feature:
EST sequence >CF833083 ID=CF833083; Name=CF833083; organism=Citrus sinensis; type=EST; length=784bpback to top |