CF833083

Overview
NameCF833083
Unique NameCF833083
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length784
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF833083 vs. ExPASy Swiss-Prot
Match: KHDR1_RAT (KH domain-containing, RNA-binding, signal transduction-associated protein 1 OS=Rattus norvegicus GN=Khdrbs1 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.234e-16
Identity = 45/113 (39.82%), Postives = 71/113 (62.83%), Query Frame = -3
Query:  450 KYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLK--DKPGYEHLNEPLHVLVEAEFPEDIINSRLDHAVAILENLLKPVDESLDHYKKQQLRELAMLNG 782
            +YP FNFVG+ILGP+GN++KR++  T  ++ + G+GS++D  KEE+L+    P Y HLN  LHV +E   P     + + HA+  ++  L P  + +D   ++Q  EL+ LNG
Sbjct:  166 QYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVP--DMMDDICQEQFLELSYLNG 276          
BLAST of CF833083 vs. ExPASy Swiss-Prot
Match: KHDR1_MOUSE (KH domain-containing, RNA-binding, signal transduction-associated protein 1 OS=Mus musculus GN=Khdrbs1 PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.234e-16
Identity = 45/113 (39.82%), Postives = 71/113 (62.83%), Query Frame = -3
Query:  450 KYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLK--DKPGYEHLNEPLHVLVEAEFPEDIINSRLDHAVAILENLLKPVDESLDHYKKQQLRELAMLNG 782
            +YP FNFVG+ILGP+GN++KR++  T  ++ + G+GS++D  KEE+L+    P Y HLN  LHV +E   P     + + HA+  ++  L P  + +D   ++Q  EL+ LNG
Sbjct:  166 QYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVP--DMMDDICQEQFLELSYLNG 276          
BLAST of CF833083 vs. ExPASy Swiss-Prot
Match: KHDR1_HUMAN (KH domain-containing, RNA-binding, signal transduction-associated protein 1 OS=Homo sapiens GN=KHDRBS1 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.234e-16
Identity = 45/113 (39.82%), Postives = 71/113 (62.83%), Query Frame = -3
Query:  450 KYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLK--DKPGYEHLNEPLHVLVEAEFPEDIINSRLDHAVAILENLLKPVDESLDHYKKQQLRELAMLNG 782
            +YP FNFVG+ILGP+GN++KR++  T  ++ + G+GS++D  KEE+L+    P Y HLN  LHV +E   P     + + HA+  ++  L P  + +D   ++Q  EL+ LNG
Sbjct:  166 QYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVP--DMMDDICQEQFLELSYLNG 276          
BLAST of CF833083 vs. ExPASy Swiss-Prot
Match: KHDR1_CHICK (KH domain-containing, RNA-binding, signal transduction-associated protein 1 OS=Gallus gallus GN=KHDRBS1 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.234e-16
Identity = 45/113 (39.82%), Postives = 71/113 (62.83%), Query Frame = -3
Query:  450 KYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLK--DKPGYEHLNEPLHVLVEAEFPEDIINSRLDHAVAILENLLKPVDESLDHYKKQQLRELAMLNG 782
            +YP FNFVG+ILGP+GN++KR++  T  ++ + G+GS++D  KEE+L+    P Y HLN  LHV +E   P     + + HA+  ++  L P  + +D   ++Q  EL+ LNG
Sbjct:  149 QYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVP--DMMDDICQEQFLELSYLNG 259          
BLAST of CF833083 vs. ExPASy Swiss-Prot
Match: BBP_CANGA (Branchpoint-bridging protein OS=Candida glabrata GN=BBP PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.690e-16
Identity = 48/116 (41.38%), Postives = 70/116 (60.34%), Query Frame = -3
Query:  435 KYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFPEDIINSRLDHAVAILENLLKPVDESLDHYKKQQLRELAMLNGTLREE 782
            +YP  NFVG +LGPRG +L++++  + C++ IRGRGSVK+      L   PG    ++PLH L+ A+  E I N        +++ +  P  E  +  K+ QLRELA LNGTLRE+
Sbjct:  144 QYPQINFVGLLLGPRGKTLRKMQEDSGCKIAIRGRGSVKEGKTSSDL--PPGAMDFSDPLHCLIIADNEEKIENGIKACRNIVIKAVTSP--EGQNELKRGQLRELAELNGTLRED 255          
BLAST of CF833083 vs. ExPASy Swiss-Prot
Match: SF01_HUMAN (Splicing factor 1 OS=Homo sapiens GN=SF1 PE=1 SV=4)

HSP 1 Score: 84.7297 bits (208), Expect = 6.126e-16
Identity = 51/119 (42.86%), Postives = 69/119 (57.98%), Query Frame = -3
Query:  435 KYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFPEDIINSRLDHAVAILENLLK---PVDESLDHYKKQQLRELAMLNGTLREE 782
            +YP  NFVG ++GPRGN+LK +E     ++ IRG+GSVK+   +   KD       +EPLH LV A   E++       AV  + N+LK      E  +  +K QLRELA LNGTLRE+
Sbjct:  146 EYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEG--KVGRKDGQMLPGEDEPLHALVTANTMENV-----KKAVEQIRNILKQGIETPEDQNDLRKMQLRELARLNGTLRED 257          
BLAST of CF833083 vs. ExPASy Swiss-Prot
Match: BBP_SCHPO (Branchpoint-bridging protein OS=Schizosaccharomyces pombe GN=bpb1 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.045e-15
Identity = 50/119 (42.02%), Postives = 76/119 (63.87%), Query Frame = -3
Query:  435 YPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYE-HLNEPLHVLVEAEFPEDIINSRLDHAVAILENLLK---PVDESLDHYKKQQLRELAMLNGTLREE 779
            YP  NF+G ++GPRG++LK +EA +  ++ IRG+GSV    KE K +  P    ++ E LH LV A+  ED IN    HA+ +++N+++    V E  +  K+ QLR+LA LNGTLR++
Sbjct:  197 YPEINFIGLLIGPRGHTLKDMEAKSGAKIAIRGKGSV----KEGKGRSDPSVRGNMEEDLHCLVTAD-SEDKIN----HAIKLIDNVIQTAASVPEGQNDLKRNQLRQLATLNGTLRDD 306          
BLAST of CF833083 vs. ExPASy Swiss-Prot
Match: BBP_YEAST (Branchpoint-bridging protein OS=Saccharomyces cerevisiae GN=MSL5 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.365e-15
Identity = 47/119 (39.50%), Postives = 74/119 (62.18%), Query Frame = -3
Query:  435 KYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFPEDIINSRLDHAVAILENL-LKPV--DESLDHYKKQQLRELAMLNGTLREE 782
            +YP+ NFVG +LGPRG +L++++  + C++ IRGRGSVK+      L   PG  +  +PLH L+ A+  +     ++   + + +N+ +K V   E  +  K+ QLRELA LNGTLRE+
Sbjct:  158 QYPDVNFVGLLLGPRGRTLRKLQEDSNCKIAIRGRGSVKEGKNASDL--PPGAMNFEDPLHCLIIADSED-----KIQKGIKVCQNIVIKAVTSPEGQNDLKRGQLRELAELNGTLRED 269          
BLAST of CF833083 vs. ExPASy Swiss-Prot
Match: SF01_MOUSE (Splicing factor 1 OS=Mus musculus GN=Sf1 PE=1 SV=5)

HSP 1 Score: 83.1889 bits (204), Expect = 1.782e-15
Identity = 50/119 (42.02%), Postives = 69/119 (57.98%), Query Frame = -3
Query:  435 KYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFPEDIINSRLDHAVAILENLLK---PVDESLDHYKKQQLRELAMLNGTLREE 782
            +YP  NFVG ++GPRGN+LK +E     ++ IRG+GSV++   +   KD       +EPLH LV A   E++       AV  + N+LK      E  +  +K QLRELA LNGTLRE+
Sbjct:  146 EYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVEEG--KVGRKDGQMLPGEDEPLHALVTANTMENV-----KKAVEQIRNILKQGIETPEDQNDLRKMQLRELARLNGTLRED 257          
BLAST of CF833083 vs. ExPASy Swiss-Prot
Match: BBP_CANAL (Branchpoint-bridging protein OS=Candida albicans GN=BBP PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.971e-14
Identity = 42/117 (35.90%), Postives = 71/117 (60.68%), Query Frame = -3
Query:  438 YPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFPEDIINSRLDHAVAILENLLKPV---DESLDHYKKQQLRELAMLNGTLRE 779
            YP+ NFVG ++GPRGN+LK+++  +  R+ IRG+GSVK+    +          + + LHVL+ A+ P      ++  AV ++  ++  +    + ++  K+ QL+ELA+LNGTLRE
Sbjct:  159 YPDINFVGFLIGPRGNTLKKLQEDSGARLQIRGKGSVKEGKSSDGFGSSQTGTDIQDDLHVLITADSP-----LKISKAVKLVNEIIDKLIFSPQGMNFMKRDQLKELAVLNGTLRE 270          
The following BLAST results are available for this feature:
BLAST of CF833083 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
KHDR1_RAT1.234e-1639.82KH domain-containing, RNA-binding, signal transduc... [more]
KHDR1_MOUSE1.234e-1639.82KH domain-containing, RNA-binding, signal transduc... [more]
KHDR1_HUMAN1.234e-1639.82KH domain-containing, RNA-binding, signal transduc... [more]
KHDR1_CHICK1.234e-1639.82KH domain-containing, RNA-binding, signal transduc... [more]
BBP_CANGA4.690e-1641.38Branchpoint-bridging protein OS=Candida glabrata G... [more]
SF01_HUMAN6.126e-1642.86Splicing factor 1 OS=Homo sapiens GN=SF1 PE=1 SV=4[more]
BBP_SCHPO1.045e-1542.02Branchpoint-bridging protein OS=Schizosaccharomyce... [more]
BBP_YEAST1.365e-1539.50Branchpoint-bridging protein OS=Saccharomyces cere... [more]
SF01_MOUSE1.782e-1542.02Splicing factor 1 OS=Mus musculus GN=Sf1 PE=1 SV=5[more]
BBP_CANAL1.971e-1435.90Branchpoint-bridging protein OS=Candida albicans G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_03A01_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa03A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833083 ID=CF833083; Name=CF833083; organism=Citrus sinensis; type=EST; length=784bp
TTTTTTTTTTTTTTTTTAAAAATTAATTAGGGGAATCGAGTTTTTTTTAA
TCCATATAAGTAACAAATCTCGATACTCAAGCAGGAATAATACACCAAAG
AAATCATGGATTGCTGACAAACATGTTTAGCTATATAAAACACAAACAGT
GGGAAGCAGATACCCGGTCTGAGATGCCAACAGTTGAGCGCAAAACTAAC
TCAGGATTTCGACCAACTGTTCTCGAATCAAGTCCCTCCCCAAGGTTCTG
AAAAACAAAACCAATGAAGATTGTCAGGACAGCAATCCATCAGCTGCAGT
GATCCAGGGGTTCATCGATGGTCCATTTCATCATTGATATGTATAACATG
TTATCTTCCGGTCTTGGCGCGTTTCATTCCAGCATTGTTAAAGGGCGACA
TACTAGGACTCATACTCGGACTCATGCTTGGGCTTTCTTCTCTTAAAGTA
CCGTTCAGCATAGCTAATTCCCGCAGTTGTTGCTTCTTGTAATGATCCAA
GGATTCATCCACGGGCTTCAAAAGGTTCTCTAGTATTGCTACAGCATGAT
CCAAGCGGGAATTTATTATATCCTCTGGAAATTCGGCCTCCACTAACACG
TGCAGTGGCTCATTAAGATGCTCATATCCAGGTTTATCTTTAAGTTTTTC
TTCCTTTATCGAATCCTTGACTGAACCCCGGCCTCTAATGAACACCCTAC
ATTCTGTCATGGCTTCGACTCTTTTGAGCGAGTTCCCACGCGGTCCCAAA
ATCCGGCCGACAAAATTAAAATTTGGATATTTAT
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