CF833090

Overview
NameCF833090
Unique NameCF833090
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length568
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF833090 vs. ExPASy Swiss-Prot
Match: MLP3A_BOVIN (Microtubule-associated proteins 1A/1B light chain 3A OS=Bos taurus GN=MAP1LC3A PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.442e-14
Identity = 39/114 (34.21%), Postives = 67/114 (58.77%), Query Frame = 1
Query:   88 FKQEHDLXXXXXXXXXXXXXYPDRIPVIVEKAE-RSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD-NVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 423
            FKQ                 +P +IPVI+E+ +    +P +DK K+LVP  + + + V +IR+R++L+  +A F+ V+ + +      ++ IYE++KDEDGFLY+ Y+ + TFG
Sbjct:    7 FKQRRSFADRCKEVQQIREQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFG 120          
BLAST of CF833090 vs. ExPASy Swiss-Prot
Match: MP3B2_HUMAN (Microtubule-associated proteins 1A/1B light chain 3 beta 2 OS=Homo sapiens GN=MAP1LC3B2 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.166e-14
Identity = 39/119 (32.77%), Postives = 68/119 (57.14%), Query Frame = 1
Query:   88 FKQEHDLXXXXXXXXXXXXXYPDRIPVIVEKAE-RSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD-NVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGSHIPV 438
            FKQ                 +P +IPVI+E+ +    +P +DK K+LVP  + + + + +IR+R++L+A +A F+ V+ + +      +S +YE +KDEDGFLY+  + + TFG  + V
Sbjct:    7 FKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVCASQETFGMKLSV 125          
BLAST of CF833090 vs. ExPASy Swiss-Prot
Match: LGG2_CAEEL (Protein lgg-2 OS=Caenorhabditis elegans GN=lgg-2 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.651e-12
Identity = 33/94 (35.11%), Postives = 63/94 (67.02%), Query Frame = 1
Query:  151 PDRIPVIVEK--AERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFV-DNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 423
            P+++PVI+E+   ERS +P +D+ K+LVP  +TV + + ++R+R++L  ++A F+ V +  +      MS +Y +++D DGF+Y+ Y+ +  FG
Sbjct:   38 PNKVPVIIERFDGERS-LPLMDRCKFLVPEHITVAELMSIVRRRLQLHPQQAFFLLVNERSMVSNSMSMSNLYSQERDPDGFVYMVYTSQPAFG 130          
The following BLAST results are available for this feature:
BLAST of CF833090 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
MLP3A_BOVIN2.442e-1434.21Microtubule-associated proteins 1A/1B light chain ... [more]
MP3B2_HUMAN4.166e-1432.77Microtubule-associated proteins 1A/1B light chain ... [more]
LGG2_CAEEL6.651e-1235.11Protein lgg-2 OS=Caenorhabditis elegans GN=lgg-2 P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_03A06_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa03A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833090 ID=CF833090; Name=CF833090; organism=Citrus sinensis; type=EST; length=568bp
GCCCCTTAGTTCTCTCGCTCTTTTCTGTTTTTTTTTCCTCTCGCTTCTTC
GCTTCGACTCTTTACAGGAGGAATGGCAAAGAGTTACTTCAAGCAAGAGC
ATGATCTTGAGAAGAGACGCGCAGAGGCTGCAAGGATTAGGGAGAAGTAC
CCTGACAGGATTCCGGTGATTGTGGAGAAGGCAGAGAGAAGTGACATACC
AAATATAGATAAGAAGAAGTATCTTGTTCCAGCTGACCTGACTGTAGGAC
AATTTGTCTATGTCATCCGTAAAAGGATCAAACTGAGTGCTGAAAAGGCG
ATATTTATTTTTGTGGATAATGTGCTCCCACCTACAGGTGCAATTATGTC
TGCCATATACGAAGAGAAAAAGGATGAAGATGGTTTTCTTTATGTGACTT
ACAGTGGGGAGAACACATTTGGAAGCCACATCCCAGTTTAGCCTTGTGAT
TATCTATCTGCTCATTGTGTGGTTTCTTGTGCGACCGCATTTTTATCTCA
ATTGTCATCCTTGCTTTCCGCTGAATATTCCTTTATCGGGCATATTTTAT
ATTTTATAAAGACATTGC
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