CF833093

Overview
NameCF833093
Unique NameCF833093
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length687
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF833093 vs. ExPASy Swiss-Prot
Match: GAR1_ASHGO (H/ACA ribonucleoprotein complex subunit 1 OS=Ashbya gossypii GN=GAR1 PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.420e-31
Identity = 58/97 (59.79%), Postives = 77/97 (79.38%), Query Frame = 2
Query:  200 EGPPAEVVEISSFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSYSPGDKFYIDPSKLLPLARFLPQPK 490
            +GPP  VVE+ +F+H CEGD V +  N KIP+FNA IYL+NKT++GKVDEI GP+NE +F++K  EG+ A+S+  GDKFYI P KLLP+ RF+P+PK
Sbjct:   32 QGPPDSVVEMGAFMHDCEGDIVCRSINTKIPYFNAMIYLENKTEVGKVDEILGPLNEVFFTIKCAEGVKASSFKDGDKFYISPEKLLPIERFIPKPK 128          
BLAST of CF833093 vs. ExPASy Swiss-Prot
Match: GAR1_BOTFB (H/ACA ribonucleoprotein complex subunit 1 OS=Botryotinia fuckeliana (strain B05.10) GN=GAR1 PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.392e-31
Identity = 63/96 (65.62%), Postives = 75/96 (78.12%), Query Frame = 2
Query:  203 GPPAEVVEISSFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSYSPGDKFYIDPSKLLPLARFLPQPK 490
            GPPA+V  + SFLHA EG+ V +  N KIP+FNAPIYL+NKT IGKVDEI GPIN+ YF++K  EGI ATS+  GDKFYI   KLLPL +FLP+PK
Sbjct:   42 GPPADVFAMGSFLHASEGEIVCESINTKIPYFNAPIYLENKTSIGKVDEILGPINQVYFTIKPTEGIQATSFKTGDKFYIGGDKLLPLEKFLPKPK 137          
BLAST of CF833093 vs. ExPASy Swiss-Prot
Match: GAR1_SCHPO (H/ACA ribonucleoprotein complex subunit 1 OS=Schizosaccharomyces pombe GN=gar1 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.042e-31
Identity = 58/96 (60.42%), Postives = 78/96 (81.25%), Query Frame = 2
Query:  203 GPPAEVVEISSFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSYSPGDKFYIDPSKLLPLARFLPQPK 490
            GPP +V+E+  F+H CEG+ V + TN KIP+FNAPIYL+NK+QIGK+DE+FGP+N+ YF+VK  EGIV++S+  GDK Y+   KL+PL RFLP+PK
Sbjct:   25 GPPDQVIELGLFMHDCEGEMVCQSTNVKIPYFNAPIYLENKSQIGKIDEVFGPMNQVYFTVKPSEGIVSSSFKVGDKVYLSGDKLIPLDRFLPKPK 120          
BLAST of CF833093 vs. ExPASy Swiss-Prot
Match: GAR1_XENTR (H/ACA ribonucleoprotein complex subunit 1 OS=Xenopus tropicalis GN=gar1 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.124e-28
Identity = 59/101 (58.42%), Postives = 77/101 (76.24%), Query Frame = 2
Query:  200 EGPPAEVVEISSFLHACEGDAVTK-LTNE-KIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSYSPGDKFYIDPSKLLPLARFLPQPKGQ 496
            +GPP  VVE+  F+H CE D V K +T E ++P+FNAPIYL+NK QIGKVDEIFG + + YFS+K+ E + A+S+    KFYIDP+KLLPL RFLP+P G+
Sbjct:   57 QGPPESVVEVGEFMHPCEDDVVCKCITQENRVPYFNAPIYLENKEQIGKVDEIFGQLRDFYFSIKLSENMKASSFKKLQKFYIDPAKLLPLQRFLPRPPGE 157          
BLAST of CF833093 vs. ExPASy Swiss-Prot
Match: GAR1_RAT (H/ACA ribonucleoprotein complex subunit 1 OS=Rattus norvegicus GN=Gar1 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.918e-28
Identity = 59/101 (58.42%), Postives = 74/101 (73.27%), Query Frame = 2
Query:  200 EGPPAEVVEISSFLHACEGDAVTKLTNE--KIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSYSPGDKFYIDPSKLLPLARFLPQPKGQ 496
            +GPP  VV +  F+H CE D V K T E  K+P+FNAP+YL+NK QIGKVDEIFG + + YFSVK+ E + A+S+    KFYIDP KLLPL RFLP+P G+
Sbjct:   66 QGPPERVVLLGEFMHPCEDDIVCKCTTEENKVPYFNAPVYLENKEQIGKVDEIFGQLRDFYFSVKLSENMKASSFKKLQKFYIDPYKLLPLQRFLPRPPGE 166          
BLAST of CF833093 vs. ExPASy Swiss-Prot
Match: GAR1_MOUSE (H/ACA ribonucleoprotein complex subunit 1 OS=Mus musculus GN=Gar1 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.505e-28
Identity = 58/101 (57.43%), Postives = 74/101 (73.27%), Query Frame = 2
Query:  200 EGPPAEVVEISSFLHACEGDAVTKLTNE--KIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSYSPGDKFYIDPSKLLPLARFLPQPKGQ 496
            +GPP  VV +  F+H CE D V K T E  K+P+FNAP+YL+NK Q+GKVDEIFG + + YFSVK+ E + A+S+    KFYIDP KLLPL RFLP+P G+
Sbjct:   75 QGPPERVVLLGEFMHPCEDDIVCKCTTEENKVPYFNAPVYLENKEQVGKVDEIFGQLRDFYFSVKLSENMKASSFKKLQKFYIDPYKLLPLQRFLPRPPGE 175          
BLAST of CF833093 vs. ExPASy Swiss-Prot
Match: GAR1_HUMAN (H/ACA ribonucleoprotein complex subunit 1 OS=Homo sapiens GN=GAR1 PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.505e-28
Identity = 59/101 (58.42%), Postives = 74/101 (73.27%), Query Frame = 2
Query:  200 EGPPAEVVEISSFLHACEGDAVTKLTNE--KIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSYSPGDKFYIDPSKLLPLARFLPQPKGQ 496
            +GPP  VV +  FLH CE D V K T +  K+P+FNAP+YL+NK QIGKVDEIFG + + YFSVK+ E + A+S+    KFYIDP KLLPL RFLP+P G+
Sbjct:   64 QGPPERVVLLGEFLHPCEDDIVCKCTTDENKVPYFNAPVYLENKEQIGKVDEIFGQLRDFYFSVKLSENMKASSFKKLQKFYIDPYKLLPLQRFLPRPPGE 164          
BLAST of CF833093 vs. ExPASy Swiss-Prot
Match: GAR1_CRYNE (H/ACA ribonucleoprotein complex subunit 1 OS=Cryptococcus neoformans GN=GAR1 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.243e-27
Identity = 64/106 (60.38%), Postives = 77/106 (72.64%), Query Frame = 2
Query:  203 GPPAEVVEISSFLHACEGDAVTKLTNE-KIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSYSPGDKFYIDPSKLLPLARFLPQPK--GQAQAGA 511
            GPP  V+EI SF H  E + +  LT   KIP+FNAPIYLQNKTQIGKVDEI GPINE YF+VKM +G++A+S+   DK YI   KLLP+ RFLP+PK  G  + GA
Sbjct:   35 GPPDTVLEIGSFQHDVESEMLCSLTAPTKIPYFNAPIYLQNKTQIGKVDEILGPINEVYFTVKMEQGMLASSFKKEDKVYISGEKLLPIERFLPKPKVAGGKERGA 140          
BLAST of CF833093 vs. ExPASy Swiss-Prot
Match: GAR1_USTMA (H/ACA ribonucleoprotein complex subunit 1 OS=Ustilago maydis GN=GAR1 PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.769e-27
Identity = 59/102 (57.84%), Postives = 76/102 (74.51%), Query Frame = 2
Query:  203 GPPAEVVEISSFLHACEGDAVTKLTNEK-IPFFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSYSPGDKFYIDPSKLLPLARFLPQPKGQAQA 505
            GPP  V  + SF+HA EG+ + + T+ K +P+FNAPIYL+NK+QIGKVDEI GPINE +F+VKM  G+VATS+   DK YI   KLLP+ RFLP+PK   +A
Sbjct:   40 GPPETVQPMGSFMHAVEGEMLCQSTDAKHVPYFNAPIYLENKSQIGKVDEILGPINEVFFTVKMDPGMVATSFKADDKVYISGDKLLPIERFLPKPKSLTKA 141          
BLAST of CF833093 vs. ExPASy Swiss-Prot
Match: GAR1_DANRE (H/ACA ribonucleoprotein complex subunit 1 OS=Danio rerio GN=gar1 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.169e-27
Identity = 56/100 (56.00%), Postives = 72/100 (72.00%), Query Frame = 2
Query:  203 GPPAEVVEISSFLHACEGDAVTKLTNE--KIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSYSPGDKFYIDPSKLLPLARFLPQPKGQ 496
            GPP  VV +  F+H CE + V K   E  K+P+FNAP+YL+NK QIGKVDEIFG + + YFSVK+ + + A+S+    KFYIDP KLLPL RFLP+P G+
Sbjct:   59 GPPEYVVALGEFMHPCEDEIVCKCVTEENKVPYFNAPVYLENKEQIGKVDEIFGQLRDFYFSVKLSDNMKASSFKKLQKFYIDPMKLLPLQRFLPRPPGE 158          
The following BLAST results are available for this feature:
BLAST of CF833093 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
GAR1_ASHGO2.420e-3159.79H/ACA ribonucleoprotein complex subunit 1 OS=Ashby... [more]
GAR1_BOTFB5.392e-3165.63H/ACA ribonucleoprotein complex subunit 1 OS=Botry... [more]
GAR1_SCHPO7.042e-3160.42H/ACA ribonucleoprotein complex subunit 1 OS=Schiz... [more]
GAR1_XENTR1.124e-2858.42H/ACA ribonucleoprotein complex subunit 1 OS=Xenop... [more]
GAR1_RAT1.918e-2858.42H/ACA ribonucleoprotein complex subunit 1 OS=Rattu... [more]
GAR1_MOUSE2.505e-2857.43H/ACA ribonucleoprotein complex subunit 1 OS=Mus m... [more]
GAR1_HUMAN2.505e-2858.42H/ACA ribonucleoprotein complex subunit 1 OS=Homo ... [more]
GAR1_CRYNE1.243e-2760.38H/ACA ribonucleoprotein complex subunit 1 OS=Crypt... [more]
GAR1_USTMA2.769e-2757.84H/ACA ribonucleoprotein complex subunit 1 OS=Ustil... [more]
GAR1_DANRE6.169e-2756.00H/ACA ribonucleoprotein complex subunit 1 OS=Danio... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_03A07_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa03A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833093 ID=CF833093; Name=CF833093; organism=Citrus sinensis; type=EST; length=687bp
GTCGCGCGCTTGCTTTACACTAAGCCCCTTGTCGTTTCTCCTAAAATCAA
CCCCCTTCCAGATTAAAAAAATGAGACCCCCGAGAGGAGGAGGCGGTTTC
AGGGGAGGAAGAGACGGCGGCCGTGGTGGAAGGGGCGGCGGCCGTTTTGG
TGGAGGCGGTCGTGGCGGTGGCGGTCGAGGTGGTTTTGGGTTCCGTGACG
AAGGACCTCCTGCCGAAGTTGTTGAGATATCTTCGTTTCTTCATGCGTGT
GAAGGTGATGCTGTGACAAAGCTCACCAATGAGAAAATACCTTTCTTTAA
TGCTCCAATCTATCTGCAAAACAAGACCCAGATAGGGAAAGTTGATGAAA
TTTTTGGTCCCATTAATGAATCTTATTTTTCGGTCAAAATGATGGAAGGT
ATTGTTGCAACTTCATATTCACCGGGTGATAAGTTCTACATTGACCCAAG
CAAGCTGTTGCCTCTTGCTAGATTTCTTCCGCAACCAAAGGGACAGGCAC
AAGCTGGTGCAAGAGGCGGCCGTGGAGGAGGCGGCTTTAGGGGCAGAGGA
GGTGGTAGAGGTGGAGGCCGTGGTCGTGGTGGAGGAGGAGGTGGCTTTAG
GGGCAGAGGTGGACCTCCTAGAGGTGGTCGTGGTGGTGGCTTTAAGGGCA
GAGGAAGGTTTTAGAACACCCTGTAGTTCTACTAGTG
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