CF833093
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF833093 vs. ExPASy Swiss-Prot
Match: GAR1_ASHGO (H/ACA ribonucleoprotein complex subunit 1 OS=Ashbya gossypii GN=GAR1 PE=3 SV=1) HSP 1 Score: 135.576 bits (340), Expect = 2.420e-31 Identity = 58/97 (59.79%), Postives = 77/97 (79.38%), Query Frame = 2 Query: 200 EGPPAEVVEISSFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSYSPGDKFYIDPSKLLPLARFLPQPK 490 +GPP VVE+ +F+H CEGD V + N KIP+FNA IYL+NKT++GKVDEI GP+NE +F++K EG+ A+S+ GDKFYI P KLLP+ RF+P+PK Sbjct: 32 QGPPDSVVEMGAFMHDCEGDIVCRSINTKIPYFNAMIYLENKTEVGKVDEILGPLNEVFFTIKCAEGVKASSFKDGDKFYISPEKLLPIERFIPKPK 128
BLAST of CF833093 vs. ExPASy Swiss-Prot
Match: GAR1_BOTFB (H/ACA ribonucleoprotein complex subunit 1 OS=Botryotinia fuckeliana (strain B05.10) GN=GAR1 PE=3 SV=1) HSP 1 Score: 134.42 bits (337), Expect = 5.392e-31 Identity = 63/96 (65.62%), Postives = 75/96 (78.12%), Query Frame = 2 Query: 203 GPPAEVVEISSFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSYSPGDKFYIDPSKLLPLARFLPQPK 490 GPPA+V + SFLHA EG+ V + N KIP+FNAPIYL+NKT IGKVDEI GPIN+ YF++K EGI ATS+ GDKFYI KLLPL +FLP+PK Sbjct: 42 GPPADVFAMGSFLHASEGEIVCESINTKIPYFNAPIYLENKTSIGKVDEILGPINQVYFTIKPTEGIQATSFKTGDKFYIGGDKLLPLEKFLPKPK 137
BLAST of CF833093 vs. ExPASy Swiss-Prot
Match: GAR1_SCHPO (H/ACA ribonucleoprotein complex subunit 1 OS=Schizosaccharomyces pombe GN=gar1 PE=2 SV=1) HSP 1 Score: 134.035 bits (336), Expect = 7.042e-31 Identity = 58/96 (60.42%), Postives = 78/96 (81.25%), Query Frame = 2 Query: 203 GPPAEVVEISSFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSYSPGDKFYIDPSKLLPLARFLPQPK 490 GPP +V+E+ F+H CEG+ V + TN KIP+FNAPIYL+NK+QIGK+DE+FGP+N+ YF+VK EGIV++S+ GDK Y+ KL+PL RFLP+PK Sbjct: 25 GPPDQVIELGLFMHDCEGEMVCQSTNVKIPYFNAPIYLENKSQIGKIDEVFGPMNQVYFTVKPSEGIVSSSFKVGDKVYLSGDKLIPLDRFLPKPK 120
BLAST of CF833093 vs. ExPASy Swiss-Prot
Match: GAR1_XENTR (H/ACA ribonucleoprotein complex subunit 1 OS=Xenopus tropicalis GN=gar1 PE=2 SV=1) HSP 1 Score: 126.716 bits (317), Expect = 1.124e-28 Identity = 59/101 (58.42%), Postives = 77/101 (76.24%), Query Frame = 2 Query: 200 EGPPAEVVEISSFLHACEGDAVTK-LTNE-KIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSYSPGDKFYIDPSKLLPLARFLPQPKGQ 496 +GPP VVE+ F+H CE D V K +T E ++P+FNAPIYL+NK QIGKVDEIFG + + YFS+K+ E + A+S+ KFYIDP+KLLPL RFLP+P G+ Sbjct: 57 QGPPESVVEVGEFMHPCEDDVVCKCITQENRVPYFNAPIYLENKEQIGKVDEIFGQLRDFYFSIKLSENMKASSFKKLQKFYIDPAKLLPLQRFLPRPPGE 157
BLAST of CF833093 vs. ExPASy Swiss-Prot
Match: GAR1_RAT (H/ACA ribonucleoprotein complex subunit 1 OS=Rattus norvegicus GN=Gar1 PE=2 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 1.918e-28 Identity = 59/101 (58.42%), Postives = 74/101 (73.27%), Query Frame = 2 Query: 200 EGPPAEVVEISSFLHACEGDAVTKLTNE--KIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSYSPGDKFYIDPSKLLPLARFLPQPKGQ 496 +GPP VV + F+H CE D V K T E K+P+FNAP+YL+NK QIGKVDEIFG + + YFSVK+ E + A+S+ KFYIDP KLLPL RFLP+P G+ Sbjct: 66 QGPPERVVLLGEFMHPCEDDIVCKCTTEENKVPYFNAPVYLENKEQIGKVDEIFGQLRDFYFSVKLSENMKASSFKKLQKFYIDPYKLLPLQRFLPRPPGE 166
BLAST of CF833093 vs. ExPASy Swiss-Prot
Match: GAR1_MOUSE (H/ACA ribonucleoprotein complex subunit 1 OS=Mus musculus GN=Gar1 PE=2 SV=1) HSP 1 Score: 125.561 bits (314), Expect = 2.505e-28 Identity = 58/101 (57.43%), Postives = 74/101 (73.27%), Query Frame = 2 Query: 200 EGPPAEVVEISSFLHACEGDAVTKLTNE--KIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSYSPGDKFYIDPSKLLPLARFLPQPKGQ 496 +GPP VV + F+H CE D V K T E K+P+FNAP+YL+NK Q+GKVDEIFG + + YFSVK+ E + A+S+ KFYIDP KLLPL RFLP+P G+ Sbjct: 75 QGPPERVVLLGEFMHPCEDDIVCKCTTEENKVPYFNAPVYLENKEQVGKVDEIFGQLRDFYFSVKLSENMKASSFKKLQKFYIDPYKLLPLQRFLPRPPGE 175
BLAST of CF833093 vs. ExPASy Swiss-Prot
Match: GAR1_HUMAN (H/ACA ribonucleoprotein complex subunit 1 OS=Homo sapiens GN=GAR1 PE=1 SV=1) HSP 1 Score: 125.561 bits (314), Expect = 2.505e-28 Identity = 59/101 (58.42%), Postives = 74/101 (73.27%), Query Frame = 2 Query: 200 EGPPAEVVEISSFLHACEGDAVTKLTNE--KIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSYSPGDKFYIDPSKLLPLARFLPQPKGQ 496 +GPP VV + FLH CE D V K T + K+P+FNAP+YL+NK QIGKVDEIFG + + YFSVK+ E + A+S+ KFYIDP KLLPL RFLP+P G+ Sbjct: 64 QGPPERVVLLGEFLHPCEDDIVCKCTTDENKVPYFNAPVYLENKEQIGKVDEIFGQLRDFYFSVKLSENMKASSFKKLQKFYIDPYKLLPLQRFLPRPPGE 164
BLAST of CF833093 vs. ExPASy Swiss-Prot
Match: GAR1_CRYNE (H/ACA ribonucleoprotein complex subunit 1 OS=Cryptococcus neoformans GN=GAR1 PE=3 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 1.243e-27 Identity = 64/106 (60.38%), Postives = 77/106 (72.64%), Query Frame = 2 Query: 203 GPPAEVVEISSFLHACEGDAVTKLTNE-KIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSYSPGDKFYIDPSKLLPLARFLPQPK--GQAQAGA 511 GPP V+EI SF H E + + LT KIP+FNAPIYLQNKTQIGKVDEI GPINE YF+VKM +G++A+S+ DK YI KLLP+ RFLP+PK G + GA Sbjct: 35 GPPDTVLEIGSFQHDVESEMLCSLTAPTKIPYFNAPIYLQNKTQIGKVDEILGPINEVYFTVKMEQGMLASSFKKEDKVYISGEKLLPIERFLPKPKVAGGKERGA 140
BLAST of CF833093 vs. ExPASy Swiss-Prot
Match: GAR1_USTMA (H/ACA ribonucleoprotein complex subunit 1 OS=Ustilago maydis GN=GAR1 PE=3 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 2.769e-27 Identity = 59/102 (57.84%), Postives = 76/102 (74.51%), Query Frame = 2 Query: 203 GPPAEVVEISSFLHACEGDAVTKLTNEK-IPFFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSYSPGDKFYIDPSKLLPLARFLPQPKGQAQA 505 GPP V + SF+HA EG+ + + T+ K +P+FNAPIYL+NK+QIGKVDEI GPINE +F+VKM G+VATS+ DK YI KLLP+ RFLP+PK +A Sbjct: 40 GPPETVQPMGSFMHAVEGEMLCQSTDAKHVPYFNAPIYLENKSQIGKVDEILGPINEVFFTVKMDPGMVATSFKADDKVYISGDKLLPIERFLPKPKSLTKA 141
BLAST of CF833093 vs. ExPASy Swiss-Prot
Match: GAR1_DANRE (H/ACA ribonucleoprotein complex subunit 1 OS=Danio rerio GN=gar1 PE=2 SV=1) HSP 1 Score: 120.939 bits (302), Expect = 6.169e-27 Identity = 56/100 (56.00%), Postives = 72/100 (72.00%), Query Frame = 2 Query: 203 GPPAEVVEISSFLHACEGDAVTKLTNE--KIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSYSPGDKFYIDPSKLLPLARFLPQPKGQ 496 GPP VV + F+H CE + V K E K+P+FNAP+YL+NK QIGKVDEIFG + + YFSVK+ + + A+S+ KFYIDP KLLPL RFLP+P G+ Sbjct: 59 GPPEYVVALGEFMHPCEDEIVCKCVTEENKVPYFNAPVYLENKEQIGKVDEIFGQLRDFYFSVKLSDNMKASSFKKLQKFYIDPMKLLPLQRFLPRPPGE 158 The following BLAST results are available for this feature:
BLAST of CF833093 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 24
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Sequences
The
following sequences are available for this feature:
EST sequence >CF833093 ID=CF833093; Name=CF833093; organism=Citrus sinensis; type=EST; length=687bpback to top |