CF833116

Overview
NameCF833116
Unique NameCF833116
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length846
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF833116 vs. ExPASy Swiss-Prot
Match: GLYA_MACCJ (Serine hydroxymethyltransferase OS=Macrococcus caseolyticus (strain JCSC5402) GN=glyA PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 6.909e-32
Identity = 76/184 (41.30%), Postives = 103/184 (55.98%), Query Frame = 2
Query:   11 NPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 559
            NP  +   VTTTTHK+LRGPR GMI  +                ++   I+  +FP +QGGP  H I A AVA  +A T  FKAY +QV  NA  L + LT KG  +V+GGT+NH++  D+    +TG   E+  D   IT NKN + F   S     G+RIGTPA+T+RG  E+D ++I   +
Sbjct:  212 NPVPHADFVTTTTHKTLRGPRGGMIICKE---------------EYAKAIDKMIFPGIQGGPLMHVIAAKAVAFGEALTADFKAYQQQVVLNAKTLADALTEKGLRIVSGGTDNHVMSIDVTSFNITGKVAERALDDVGITTNKNTIPFDKESPFVTSGIRIGTPAVTTRGFNEEDMKEIASII 380          
BLAST of CF833116 vs. ExPASy Swiss-Prot
Match: GLYA_LEPBL (Serine hydroxymethyltransferase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=glyA PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 6.909e-32
Identity = 86/236 (36.44%), Postives = 118/236 (50.00%), Query Frame = 2
Query:   11 NPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALKADVEKFASSFDMPGFKM 715
            +P      VTTTTHK+LRGPR G+I                +  + E  +N  VFP +QGGP  H I A AVA K+A  P +K Y + V ANA  L      +GY +V+GGT+NHLVL D+   GLTG +     D   +TVNKNA+ F  +      G+R+GTPA+T+RGL   D E +                  G L+ DF       K+ + +K  V++    F M  F++
Sbjct:  212 SPVGLFDFVTTTTHKTLRGPRGGLIL---------------STLENEKVLNSRVFPGIQGGPLMHVIAAKAVAFKEALQPEYKKYIEIVLANAKTLAEVFLKRGYRVVSGGTDNHLVLLDVSVKGLTGVQAADGLDEVGVTVNKNAIPFDKNPPAVASGIRLGTPALTTRGLKPADMETV------------------GNLICDFLDNPNEEKNKKRVKGGVQEITRKFPMDQFRL 414          
BLAST of CF833116 vs. ExPASy Swiss-Prot
Match: GLYA_LEPBJ (Serine hydroxymethyltransferase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=glyA PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 6.909e-32
Identity = 86/236 (36.44%), Postives = 118/236 (50.00%), Query Frame = 2
Query:   11 NPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALKADVEKFASSFDMPGFKM 715
            +P      VTTTTHK+LRGPR G+I                +  + E  +N  VFP +QGGP  H I A AVA K+A  P +K Y + V ANA  L      +GY +V+GGT+NHLVL D+   GLTG +     D   +TVNKNA+ F  +      G+R+GTPA+T+RGL   D E +                  G L+ DF       K+ + +K  V++    F M  F++
Sbjct:  212 SPVGLFDFVTTTTHKTLRGPRGGLIL---------------STLENEKVLNSRVFPGIQGGPLMHVIAAKAVAFKEALQPEYKKYIEIVLANAKTLAEVFLKRGYRVVSGGTDNHLVLLDVSVKGLTGVQAADGLDEVGVTVNKNAIPFDKNPPAVASGIRLGTPALTTRGLKPADMETV------------------GNLICDFLDNPNEEKNKKRVKGGVQEITRKFPMDQFRL 414          
BLAST of CF833116 vs. ExPASy Swiss-Prot
Match: GLYA_HAES1 (Serine hydroxymethyltransferase OS=Haemophilus somnus (strain 129Pt) GN=glyA PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 6.909e-32
Identity = 78/184 (42.39%), Postives = 101/184 (54.89%), Query Frame = 2
Query:   11 NPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 559
            +P  + H+VTTTTHK+L GPR G+I                   +   K+N AVFP+ QGGP  H I A AV  K+A  P FK Y  QV  NA A+      +GY++V+ GTENHL L DL   GLTG   +      NITVNKNAV  D        G+R+GTPA+T RG  E+D  ++  ++
Sbjct:  215 SPMPHAHVVTTTTHKTLAGPRGGLILANGNE-------------ELYKKLNSAVFPAGQGGPLVHVIAAKAVCFKEALEPEFKTYQAQVVKNAKAMVEVFKQRGYNVVSNGTENHLFLVDLVSHGLTGKAADAALSRANITVNKNAVPNDPQKPFVTSGIRVGTPAVTRRGFNEEDVAELAGWM 385          
BLAST of CF833116 vs. ExPASy Swiss-Prot
Match: GLYA_DESAH (Serine hydroxymethyltransferase OS=Desulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2) GN=glyA PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 6.909e-32
Identity = 77/188 (40.96%), Postives = 109/188 (57.98%), Query Frame = 2
Query:   11 NPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAV 571
            +P  +  IVTTTTHK+LRGPR G+I                +  +   KI+  +FP +QGGP  H I A AVALK+A +P+F  Y +QV ANA  L + L  +G  LV+ GT+NHL+L +L   G++G   E       ITVNKNAV  D    +   G+RIGTP +T+RG+ E + + + E + +A+
Sbjct:  214 SPVPHADIVTTTTHKTLRGPRGGLIL---------------SSNEIGPKISSQIFPGIQGGPLMHVIAAKAVALKEALSPSFAQYQRQVVANAATLADALMDRGMKLVSNGTDNHLMLLNLTHNGISGKDAENRLGAAGITVNKNAVPNDPRGPMITSGIRIGTPLVTTRGMGETEMDLVAELITQAL 386          
BLAST of CF833116 vs. ExPASy Swiss-Prot
Match: GLYA_CAMJE (Serine hydroxymethyltransferase OS=Campylobacter jejuni GN=glyA PE=1 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 6.909e-32
Identity = 85/232 (36.64%), Postives = 118/232 (50.86%), Query Frame = 2
Query:    2 EAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALKADVEKFASSF 694
            E  +PF Y H+V++TTHK+LRGPR G+I                   +   KIN A+FP +QGGP  H I A AV  K   +  +K YAKQV+ NA  L N L  + + LV+ GT+NHLVL        +G   +       IT NKN V G+  S     G+R+GTPA+T+RG  EK+ E +  ++                +L D N    N K  E +K +++K AS+F
Sbjct:  207 EHPSPFPYAHVVSSTTHKTLRGPRGGIIMTNDE--------------ELAKKINSAIFPGIQGGPLMHVIAAKAVGFKFNLSDEWKVYAKQVRTNAQVLANVLMDRKFKLVSDGTDNHLVLMSFLDREFSGKDADLALGNAGITANKNTVPGEIRSPFITSGLRLGTPALTARGFKEKEMEIVSNYI--------------ADILDDVN----NEKLQENIKQELKKLASNF 406          
BLAST of CF833116 vs. ExPASy Swiss-Prot
Match: GLYA_BACHK (Serine hydroxymethyltransferase OS=Bacillus thuringiensis subsp. konkukian GN=glyA PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 6.909e-32
Identity = 90/231 (38.96%), Postives = 117/231 (50.65%), Query Frame = 2
Query:   11 NPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALKADVEKFASSFDM 700
            NP  + H VTTTTHK+LRGPR GMI                    F  +I+ ++FP +QGGP  H I A AVA  +A    FK YA+ +  NA  L   L  +G +LV+GGT+NHL+L D+R L +TG   E + D   ITVNKN + F  +S     GVRIGT A+TSRG   +D ++I   +  A TL                K   N   +E  +  VE   S F M
Sbjct:  213 NPVPHAHFVTTTTHKTLRGPRGGMILCEE---------------QFAKQIDKSIFPGIQGGPLMHVIAAKAVAFGEALQDDFKTYAQNIINNANRLAEGLQKEGLTLVSGGTDNHLILIDVRNLEITGKVAEHVLDEVGITVNKNTIPFETASPFVTSGVRIGTAAVTSRGFGLEDMDEIASLI--AYTL----------------KNHENEAALEEARKRVEALTSKFPM 410          
BLAST of CF833116 vs. ExPASy Swiss-Prot
Match: GLYA_BACC3 (Serine hydroxymethyltransferase OS=Bacillus cereus (strain 03BB102) GN=glyA PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 6.909e-32
Identity = 90/231 (38.96%), Postives = 117/231 (50.65%), Query Frame = 2
Query:   11 NPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALKADVEKFASSFDM 700
            NP  + H VTTTTHK+LRGPR GMI                    F  +I+ ++FP +QGGP  H I A AVA  +A    FK YA+ +  NA  L   L  +G +LV+GGT+NHL+L D+R L +TG   E + D   ITVNKN + F  +S     GVRIGT A+TSRG   +D ++I   +  A TL                K   N   +E  +  VE   S F M
Sbjct:  212 NPVPHAHFVTTTTHKTLRGPRGGMILCEE---------------QFAKQIDKSIFPGIQGGPLMHVIAAKAVAFGEALQDDFKTYAQNIINNANRLAEGLQKEGLTLVSGGTDNHLILIDVRNLEITGKVAEHVLDEVGITVNKNTIPFETASPFVTSGVRIGTAAVTSRGFGLEDMDEIASLI--AYTL----------------KNHENEAALEEARKRVEALTSKFPM 409          
BLAST of CF833116 vs. ExPASy Swiss-Prot
Match: GLYA_BACC0 (Serine hydroxymethyltransferase OS=Bacillus cereus (strain AH820) GN=glyA PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 6.909e-32
Identity = 90/231 (38.96%), Postives = 117/231 (50.65%), Query Frame = 2
Query:   11 NPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALKADVEKFASSFDM 700
            NP  + H VTTTTHK+LRGPR GMI                    F  +I+ ++FP +QGGP  H I A AVA  +A    FK YA+ +  NA  L   L  +G +LV+GGT+NHL+L D+R L +TG   E + D   ITVNKN + F  +S     GVRIGT A+TSRG   +D ++I   +  A TL                K   N   +E  +  VE   S F M
Sbjct:  212 NPVPHAHFVTTTTHKTLRGPRGGMILCEE---------------QFAKQIDKSIFPGIQGGPLMHVIAAKAVAFGEALQDDFKTYAQNIINNANRLAEGLQKEGLTLVSGGTDNHLILIDVRNLEITGKVAEHVLDEVGITVNKNTIPFETASPFVTSGVRIGTAAVTSRGFGLEDMDEIASLI--AYTL----------------KNHENEAALEEARKRVEALTSKFPM 409          
BLAST of CF833116 vs. ExPASy Swiss-Prot
Match: GLYA_BACAN (Serine hydroxymethyltransferase OS=Bacillus anthracis GN=glyA PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 6.909e-32
Identity = 90/231 (38.96%), Postives = 117/231 (50.65%), Query Frame = 2
Query:   11 NPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALKADVEKFASSFDM 700
            NP  + H VTTTTHK+LRGPR GMI                    F  +I+ ++FP +QGGP  H I A AVA  +A    FK YA+ +  NA  L   L  +G +LV+GGT+NHL+L D+R L +TG   E + D   ITVNKN + F  +S     GVRIGT A+TSRG   +D ++I   +  A TL                K   N   +E  +  VE   S F M
Sbjct:  212 NPVPHAHFVTTTTHKTLRGPRGGMILCEE---------------QFAKQIDKSIFPGIQGGPLMHVIAAKAVAFGEALQDDFKTYAQNIINNANRLAEGLQKEGLTLVSGGTDNHLILIDVRNLEITGKVAEHVLDEVGITVNKNTIPFETASPFVTSGVRIGTAAVTSRGFGLEDMDEIASLI--AYTL----------------KNHENEAALEEARKRVEALTSKFPM 409          
The following BLAST results are available for this feature:
BLAST of CF833116 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_MACCJ6.909e-3241.30Serine hydroxymethyltransferase OS=Macrococcus cas... [more]
GLYA_LEPBL6.909e-3236.44Serine hydroxymethyltransferase OS=Leptospira borg... [more]
GLYA_LEPBJ6.909e-3236.44Serine hydroxymethyltransferase OS=Leptospira borg... [more]
GLYA_HAES16.909e-3242.39Serine hydroxymethyltransferase OS=Haemophilus som... [more]
GLYA_DESAH6.909e-3240.96Serine hydroxymethyltransferase OS=Desulfobacteriu... [more]
GLYA_CAMJE6.909e-3236.64Serine hydroxymethyltransferase OS=Campylobacter j... [more]
GLYA_BACHK6.909e-3238.96Serine hydroxymethyltransferase OS=Bacillus thurin... [more]
GLYA_BACC36.909e-3238.96Serine hydroxymethyltransferase OS=Bacillus cereus... [more]
GLYA_BACC06.909e-3238.96Serine hydroxymethyltransferase OS=Bacillus cereus... [more]
GLYA_BACAN6.909e-3238.96Serine hydroxymethyltransferase OS=Bacillus anthra... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_03A20_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa03A20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833116 ID=CF833116; Name=CF833116; organism=Citrus sinensis; type=EST; length=846bp
GGAAGCTGCAAACCCCTTTGAGTACTGTCACATAGTCACAACCACTACTC
ACAAGAGCTTGCGGGGTCCTAGGGCTGGTATGATCTTCTACCGGAAGGGT
CCTAAACCACCCAAGAAGGGCCAACCAGAGGGTGCGGTTTATGACTTTGA
AGACAAGATCAACTTTGCTGTCTTCCCATCCCTTCAAGGTGGTCCTCACA
ACCACCAGATTGGTGCTCTAGCTGTTGCCCTGAAACAGGCCTCGACCCCT
GCATTCAAGGCCTATGCGAAACAAGTCAAGGCCAATGCAGTTGCACTTGG
GAACTACCTGACGGGCAAGGGATACAGCCTTGTCACTGGTGGAACTGAGA
ACCACCTTGTTCTCTGGGATCTACGCCCTCTTGGATTGACTGGCAATAAG
GTTGAGAAGCTCTGTGACCTTTGCAACATTACTGTGAACAAGAATGCTGT
GTTTGGTGACAGCAGTGCCTTGGCCCCTGGAGGAGTAAGAATCGGTACTC
CTGCCATGACTTCCAGAGGTTTGTTGGAGAAGGACTTCGAGCAAATTGGA
GAGTTTCTTCACCGCGCTGTGACCCTCACGTTGGAAATTCAAAAGGAGTA
TGGAAAGCTCTTGAAGGACTTCAACAAGGGTCTGGTGAACAACAAGGACA
TCGAGGCCCTCAAGGCTGATGTTGAGAAGTTCGCCAGCTCATTTGACATG
CCCGGCTTTAAAATGTCCGAGATGAAGTACAAGGATTANGTCTCAAAGTA
TCATCATTATTGTTACTGTGTTGTTAGCAACTCTTTAGTGTTGAAAAACA
GAAAGAGAAGAAAAAAAATTGCATGCATCTTTGCCTTTTGTTGTCC
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