CF833116
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF833116 vs. ExPASy Swiss-Prot
Match: GLYA_DESRM (Serine hydroxymethyltransferase OS=Desulfotomaculum reducens (strain MI-1) GN=glyA PE=3 SV=1) HSP 1 Score: 152.91 bits (385), Expect = 2.075e-36 Identity = 84/190 (44.21%), Postives = 114/190 (60.00%), Query Frame = 2 Query: 11 NPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTL 577 +P Y +VTTTTHK+LRGPR GMI + ++ I+ A+FP QGGP H I A A A +A P FKAY +Q+ NA AL L +G++LV+GGT+NHL+L DLR G+TG + E L D +IT NKNA+ F G+R+GTPA+T+RG EKD +++ E + A+TL Sbjct: 214 SPVPYADVVTTTTHKTLRGPRGGMILCKE---------------EYAQLIDKAIFPGSQGGPLMHVIAAKAAAFGEALKPEFKAYQQQIINNAQALAKGLLERGFNLVSGGTDNHLILVDLRGTGITGKQAETLLDEVHITCNKNAIPFDPEKPFVTSGIRLGTPAVTTRGFKEKDMDKVAEII--ALTL 386
BLAST of CF833116 vs. ExPASy Swiss-Prot
Match: GLYA_SILST (Serine hydroxymethyltransferase OS=Silicibacter sp. (strain TM1040) GN=glyA PE=3 SV=1) HSP 1 Score: 152.525 bits (384), Expect = 2.711e-36 Identity = 83/191 (43.46%), Postives = 108/191 (56.54%), Query Frame = 2 Query: 2 EAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAV 571 E +PF + + TTTTHK+LRGPR GMI D K N A+FP +QGGP H I A A +A P FK+Y KQV+ANAVAL + L G +VTGGT+ H++L DLRP G+TGN V+K +IT NKN + F G+R+GTPA T+RG E++F +I + V Sbjct: 220 EHPSPFPHADVATTTTHKTLRGPRGGMILTNNP--------------DLAKKFNSAIFPGIQGGPLMHVIAGKAAAFGEALKPEFKSYQKQVRANAVALADELIKGGLDIVTGGTDTHVMLVDLRPKGVTGNIVDKALGRAHITTNKNGIPFDPEKPTVTSGIRLGTPAGTTRGFGEEEFREIARLIVEVV 396
BLAST of CF833116 vs. ExPASy Swiss-Prot
Match: GLYA_PARD8 (Serine hydroxymethyltransferase OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=glyA PE=3 SV=1) HSP 1 Score: 152.525 bits (384), Expect = 2.711e-36 Identity = 90/209 (43.06%), Postives = 116/209 (55.50%), Query Frame = 2 Query: 11 NPFEYCHIVTTTTHKSLRGPRAGMIFY-RXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPL--GLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLKDFN 625 NP EY HIVT+TTHK+LRGPR G+I + +G + ++ AVFP +QGGP H I A AVA +A P +K Y QVKANA A+ T KGY +++GGT+NH +L DLR LTG EK +ITVNKN V F SA G+R+GTPA+T+RG E +I E + V E K G + + N Sbjct: 208 NPLEYAHIVTSTTHKTLRGPRGGIILLGKDFENPWGKKTPKGEIKKMSQLLDSAVFPGIQGGPLEHVIAAKAVAFGEALEPEYKTYQAQVKANAAAMAKAFTDKGYKIISGGTDNHSMLIDLRTKFPDLTGKVAEKALVAADITVNKNMVPFDSRSAFQTSGIRVGTPAITTRGAKEPLMGEIVELID-TVLAAPECDKTIGAVREKVN 415
BLAST of CF833116 vs. ExPASy Swiss-Prot
Match: GLYA_GEOBB (Serine hydroxymethyltransferase OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=glyA PE=3 SV=1) HSP 1 Score: 152.525 bits (384), Expect = 2.711e-36 Identity = 85/184 (46.20%), Postives = 104/184 (56.52%), Query Frame = 2 Query: 11 NPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 559 +P Y VTTTTHK+LRGPR GMI R D+ +N +FP +QGGP H I A AVA K+A TP FK Y Q+ NA AL LT +G+ L +GGT+NHL+L DL LTG E+ D ITVNKN + F S G+RIGTPA TS GL E + EQ+ F+ Sbjct: 212 SPVPYAEFVTTTTHKTLRGPRGGMIMCRE---------------DWAKTLNSNIFPGIQGGPLMHVIAAKAVAFKEALTPEFKQYQGQIVKNAKALAEGLTKRGFKLTSGGTDNHLMLVDLSQTELTGKVAEEALDRAGITVNKNGIPFDTRSPFITSGIRIGTPAATSHGLKEAEMEQVAGFI 380
BLAST of CF833116 vs. ExPASy Swiss-Prot
Match: GLYA_CHLP8 (Serine hydroxymethyltransferase OS=Chlorobaculum parvum (strain NCIB 8327) GN=glyA PE=3 SV=1) HSP 1 Score: 152.525 bits (384), Expect = 2.711e-36 Identity = 85/195 (43.59%), Postives = 110/195 (56.41%), Query Frame = 2 Query: 5 AANPFEYCHIVTTTTHKSLRGPRAGMIF----YRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVT 574 +ANP +CH VTTTTHK+LRGPR GMI + V + I+ V P +QGGP H I AVA +A P FKAYA+Q+K NA A+ Y +V+GGT+NHL+L DLR + G E L ITVNKN V F D S G+R+GTPAMT+RG+ + E+I EF+ R ++ Sbjct: 212 SANPVPHCHFVTTTTHKTLRGPRGGMIMMGKDFENPMGITVNTKNGPRVKMMSEVIDAEVMPGIQGGPLMHIIAGKAVAFGEALQPEFKAYAQQIKDNAAAMAAKFLAADYHIVSGGTKNHLMLLDLRNKNVNGKVAENLLHDAGITVNKNMVPFDDKSPFVTSGIRVGTPAMTTRGMKVAEAEKIVEFIDRVIS 406
BLAST of CF833116 vs. ExPASy Swiss-Prot
Match: GLYA2_SULDN (Serine hydroxymethyltransferase 2 OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251) GN=glyA2 PE=3 SV=1) HSP 1 Score: 152.525 bits (384), Expect = 2.711e-36 Identity = 91/214 (42.52%), Postives = 120/214 (56.07%), Query Frame = 2 Query: 2 EAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDS-SALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAV------TLTLEIQKEYGKLLKDF 622 E +PF + H+VTTTTHK+LRGPR GMI + KIN A+FP +QGGP H I A AVA K+ P+++ YAKQVKANA L LT +GY LV+GGT+NHLVL +G + + ITVNKN V D+ S G+RIG+PA+T+RG+ E +FE I + + L ++I KE +L K F Sbjct: 213 EHMSPFPHAHVVTTTTHKTLRGPRGGMIMTDDE--------------EIAKKINSAIFPGIQGGPLVHVIAAKAVAFKEILDPSWREYAKQVKANAKVLEVVLTKRGYDLVSGGTDNHLVLVSFLNRDFSGKDADAALERAGITVNKNGVPNDTRSPFITSGIRIGSPALTARGMKEAEFELIANKICDVLDNINDTELHVKINKELEELAKGF 412
BLAST of CF833116 vs. ExPASy Swiss-Prot
Match: GLYA2_BURPS (Serine hydroxymethyltransferase 2 OS=Burkholderia pseudomallei GN=glyA2 PE=1 SV=2) HSP 1 Score: 152.525 bits (384), Expect = 2.711e-36 Identity = 84/185 (45.41%), Postives = 106/185 (57.30%), Query Frame = 2 Query: 8 ANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 559 ANP E+ H+VT+TTHK+LRGPR G + + KIN AVFP LQGGP H I AVA +A T FK Y +V ANA ALG+ L G LVTGGT+NHL+L DLRP GL G +VE+ + IT NKN + F G+R+GTPA T+RG +F ++G + Sbjct: 219 ANPVEHAHVVTSTTHKTLRGPRGGFVLTNDE--------------EIAKKINSAVFPGLQGGPLMHVIAGKAVAFGEALTDDFKTYIDRVLANAQALGDVLKAGGVDLVTGGTDNHLLLVDLRPKGLKGAQVEQALERAGITCNKNGIPFDPEKPTITSGIRLGTPAGTTRGFGAAEFREVGRLI 389
BLAST of CF833116 vs. ExPASy Swiss-Prot
Match: GLYA2_BURP1 (Serine hydroxymethyltransferase 2 OS=Burkholderia pseudomallei (strain 1710b) GN=glyA2 PE=3 SV=1) HSP 1 Score: 152.525 bits (384), Expect = 2.711e-36 Identity = 84/185 (45.41%), Postives = 106/185 (57.30%), Query Frame = 2 Query: 8 ANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 559 ANP E+ H+VT+TTHK+LRGPR G + + KIN AVFP LQGGP H I AVA +A T FK Y +V ANA ALG+ L G LVTGGT+NHL+L DLRP GL G +VE+ + IT NKN + F G+R+GTPA T+RG +F ++G + Sbjct: 219 ANPVEHAHVVTSTTHKTLRGPRGGFVLTNDE--------------EIAKKINSAVFPGLQGGPLMHVIAGKAVAFGEALTDDFKTYIDRVLANAQALGDVLKAGGVDLVTGGTDNHLLLVDLRPKGLKGAQVEQALERAGITCNKNGIPFDPEKPTITSGIRLGTPAGTTRGFGAAEFREVGRLI 389
BLAST of CF833116 vs. ExPASy Swiss-Prot
Match: GLYA_THEMA (Serine hydroxymethyltransferase OS=Thermotoga maritima GN=glyA PE=3 SV=1) HSP 1 Score: 152.14 bits (383), Expect = 3.540e-36 Identity = 82/212 (38.68%), Postives = 117/212 (55.19%), Query Frame = 2 Query: 11 NPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDS-SALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAV--------TLTLEIQKEYGKLLKD 619 NP EY H+VT+TTHK+LRGPR G+I + ++ +FP +QGGP H I A AV K+A T FK Y KQV NA + +GY +V+GGT+ HL L DL P +TG EK + C ITVNKN + + S G+RIGTPA+T+RG+ E++ E+I E + + T+ E+++E K +++ Sbjct: 213 NPLEYAHVVTSTTHKTLRGPRGGLILTNDP--------------EIAKAVDKTIFPGIQGGPLMHVIAAKAVCFKEAMTEEFKEYQKQVVKNAKKMAEEFQKRGYRIVSGGTDTHLFLVDLTPKDITGKAAEKALESCGITVNKNTIPNEKRSPFVASGIRIGTPAVTTRGMKEEEMEEIAEMIDLVLSNVIDENGTVKPEVREEVSKKVRE 410
BLAST of CF833116 vs. ExPASy Swiss-Prot
Match: GLYA_SALRD (Serine hydroxymethyltransferase OS=Salinibacter ruber (strain DSM 13855) GN=glyA PE=3 SV=1) HSP 1 Score: 152.14 bits (383), Expect = 3.540e-36 Identity = 84/190 (44.21%), Postives = 108/190 (56.84%), Query Frame = 2 Query: 11 NPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXE--GAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAV 571 +P + H+VTTTTHK+LRGPR GMI G + ++ AVFP QGGP H I A AV K+A P+F Y +QV NA A+G L +GY LV+ GT+NHLVL DLR GLTG + E+ + IT NKN V F D S G+R+GTPAMT+RG +F + E + R + Sbjct: 212 DPMPHTHVVTTTTHKTLRGPRGGMILLGDDYENPMGKTARKSGRTKMMSELLDSAVFPGTQGGPLMHVIAAKAVGFKEALKPSFAEYTQQVVDNAQAMGAELRERGYDLVSDGTDNHLVLIDLRNKGLTGKEAEQALEAAGITANKNMVPFDDKSPFVTSGLRLGTPAMTTRGFGPDEFAHVAEMIDRVL 401 The following BLAST results are available for this feature:
BLAST of CF833116 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CF833116 ID=CF833116; Name=CF833116; organism=Citrus sinensis; type=EST; length=846bpback to top |