CF833116

Overview
NameCF833116
Unique NameCF833116
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length846
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF833116 vs. ExPASy Swiss-Prot
Match: GLYA_DESRM (Serine hydroxymethyltransferase OS=Desulfotomaculum reducens (strain MI-1) GN=glyA PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 2.075e-36
Identity = 84/190 (44.21%), Postives = 114/190 (60.00%), Query Frame = 2
Query:   11 NPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTL 577
            +P  Y  +VTTTTHK+LRGPR GMI  +                ++   I+ A+FP  QGGP  H I A A A  +A  P FKAY +Q+  NA AL   L  +G++LV+GGT+NHL+L DLR  G+TG + E L D  +IT NKNA+ F         G+R+GTPA+T+RG  EKD +++ E +  A+TL
Sbjct:  214 SPVPYADVVTTTTHKTLRGPRGGMILCKE---------------EYAQLIDKAIFPGSQGGPLMHVIAAKAAAFGEALKPEFKAYQQQIINNAQALAKGLLERGFNLVSGGTDNHLILVDLRGTGITGKQAETLLDEVHITCNKNAIPFDPEKPFVTSGIRLGTPAVTTRGFKEKDMDKVAEII--ALTL 386          
BLAST of CF833116 vs. ExPASy Swiss-Prot
Match: GLYA_SILST (Serine hydroxymethyltransferase OS=Silicibacter sp. (strain TM1040) GN=glyA PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.711e-36
Identity = 83/191 (43.46%), Postives = 108/191 (56.54%), Query Frame = 2
Query:    2 EAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAV 571
            E  +PF +  + TTTTHK+LRGPR GMI                   D   K N A+FP +QGGP  H I   A A  +A  P FK+Y KQV+ANAVAL + L   G  +VTGGT+ H++L DLRP G+TGN V+K     +IT NKN + F         G+R+GTPA T+RG  E++F +I   +   V
Sbjct:  220 EHPSPFPHADVATTTTHKTLRGPRGGMILTNNP--------------DLAKKFNSAIFPGIQGGPLMHVIAGKAAAFGEALKPEFKSYQKQVRANAVALADELIKGGLDIVTGGTDTHVMLVDLRPKGVTGNIVDKALGRAHITTNKNGIPFDPEKPTVTSGIRLGTPAGTTRGFGEEEFREIARLIVEVV 396          
BLAST of CF833116 vs. ExPASy Swiss-Prot
Match: GLYA_PARD8 (Serine hydroxymethyltransferase OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=glyA PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.711e-36
Identity = 90/209 (43.06%), Postives = 116/209 (55.50%), Query Frame = 2
Query:   11 NPFEYCHIVTTTTHKSLRGPRAGMIFY-RXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPL--GLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLKDFN 625
            NP EY HIVT+TTHK+LRGPR G+I   +           +G +      ++ AVFP +QGGP  H I A AVA  +A  P +K Y  QVKANA A+    T KGY +++GGT+NH +L DLR     LTG   EK     +ITVNKN V F   SA    G+R+GTPA+T+RG  E    +I E +   V    E  K  G + +  N
Sbjct:  208 NPLEYAHIVTSTTHKTLRGPRGGIILLGKDFENPWGKKTPKGEIKKMSQLLDSAVFPGIQGGPLEHVIAAKAVAFGEALEPEYKTYQAQVKANAAAMAKAFTDKGYKIISGGTDNHSMLIDLRTKFPDLTGKVAEKALVAADITVNKNMVPFDSRSAFQTSGIRVGTPAITTRGAKEPLMGEIVELID-TVLAAPECDKTIGAVREKVN 415          
BLAST of CF833116 vs. ExPASy Swiss-Prot
Match: GLYA_GEOBB (Serine hydroxymethyltransferase OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=glyA PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.711e-36
Identity = 85/184 (46.20%), Postives = 104/184 (56.52%), Query Frame = 2
Query:   11 NPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 559
            +P  Y   VTTTTHK+LRGPR GMI  R                D+   +N  +FP +QGGP  H I A AVA K+A TP FK Y  Q+  NA AL   LT +G+ L +GGT+NHL+L DL    LTG   E+  D   ITVNKN + F   S     G+RIGTPA TS GL E + EQ+  F+
Sbjct:  212 SPVPYAEFVTTTTHKTLRGPRGGMIMCRE---------------DWAKTLNSNIFPGIQGGPLMHVIAAKAVAFKEALTPEFKQYQGQIVKNAKALAEGLTKRGFKLTSGGTDNHLMLVDLSQTELTGKVAEEALDRAGITVNKNGIPFDTRSPFITSGIRIGTPAATSHGLKEAEMEQVAGFI 380          
BLAST of CF833116 vs. ExPASy Swiss-Prot
Match: GLYA_CHLP8 (Serine hydroxymethyltransferase OS=Chlorobaculum parvum (strain NCIB 8327) GN=glyA PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.711e-36
Identity = 85/195 (43.59%), Postives = 110/195 (56.41%), Query Frame = 2
Query:    5 AANPFEYCHIVTTTTHKSLRGPRAGMIF----YRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVT 574
            +ANP  +CH VTTTTHK+LRGPR GMI     +               V    + I+  V P +QGGP  H I   AVA  +A  P FKAYA+Q+K NA A+        Y +V+GGT+NHL+L DLR   + G   E L     ITVNKN V F D S     G+R+GTPAMT+RG+   + E+I EF+ R ++
Sbjct:  212 SANPVPHCHFVTTTTHKTLRGPRGGMIMMGKDFENPMGITVNTKNGPRVKMMSEVIDAEVMPGIQGGPLMHIIAGKAVAFGEALQPEFKAYAQQIKDNAAAMAAKFLAADYHIVSGGTKNHLMLLDLRNKNVNGKVAENLLHDAGITVNKNMVPFDDKSPFVTSGIRVGTPAMTTRGMKVAEAEKIVEFIDRVIS 406          
BLAST of CF833116 vs. ExPASy Swiss-Prot
Match: GLYA2_SULDN (Serine hydroxymethyltransferase 2 OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251) GN=glyA2 PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.711e-36
Identity = 91/214 (42.52%), Postives = 120/214 (56.07%), Query Frame = 2
Query:    2 EAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDS-SALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAV------TLTLEIQKEYGKLLKDF 622
            E  +PF + H+VTTTTHK+LRGPR GMI                   +   KIN A+FP +QGGP  H I A AVA K+   P+++ YAKQVKANA  L   LT +GY LV+GGT+NHLVL        +G   +   +   ITVNKN V  D+ S     G+RIG+PA+T+RG+ E +FE I   +   +       L ++I KE  +L K F
Sbjct:  213 EHMSPFPHAHVVTTTTHKTLRGPRGGMIMTDDE--------------EIAKKINSAIFPGIQGGPLVHVIAAKAVAFKEILDPSWREYAKQVKANAKVLEVVLTKRGYDLVSGGTDNHLVLVSFLNRDFSGKDADAALERAGITVNKNGVPNDTRSPFITSGIRIGSPALTARGMKEAEFELIANKICDVLDNINDTELHVKINKELEELAKGF 412          
BLAST of CF833116 vs. ExPASy Swiss-Prot
Match: GLYA2_BURPS (Serine hydroxymethyltransferase 2 OS=Burkholderia pseudomallei GN=glyA2 PE=1 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 2.711e-36
Identity = 84/185 (45.41%), Postives = 106/185 (57.30%), Query Frame = 2
Query:    8 ANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 559
            ANP E+ H+VT+TTHK+LRGPR G +                   +   KIN AVFP LQGGP  H I   AVA  +A T  FK Y  +V ANA ALG+ L   G  LVTGGT+NHL+L DLRP GL G +VE+  +   IT NKN + F         G+R+GTPA T+RG    +F ++G  +
Sbjct:  219 ANPVEHAHVVTSTTHKTLRGPRGGFVLTNDE--------------EIAKKINSAVFPGLQGGPLMHVIAGKAVAFGEALTDDFKTYIDRVLANAQALGDVLKAGGVDLVTGGTDNHLLLVDLRPKGLKGAQVEQALERAGITCNKNGIPFDPEKPTITSGIRLGTPAGTTRGFGAAEFREVGRLI 389          
BLAST of CF833116 vs. ExPASy Swiss-Prot
Match: GLYA2_BURP1 (Serine hydroxymethyltransferase 2 OS=Burkholderia pseudomallei (strain 1710b) GN=glyA2 PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.711e-36
Identity = 84/185 (45.41%), Postives = 106/185 (57.30%), Query Frame = 2
Query:    8 ANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 559
            ANP E+ H+VT+TTHK+LRGPR G +                   +   KIN AVFP LQGGP  H I   AVA  +A T  FK Y  +V ANA ALG+ L   G  LVTGGT+NHL+L DLRP GL G +VE+  +   IT NKN + F         G+R+GTPA T+RG    +F ++G  +
Sbjct:  219 ANPVEHAHVVTSTTHKTLRGPRGGFVLTNDE--------------EIAKKINSAVFPGLQGGPLMHVIAGKAVAFGEALTDDFKTYIDRVLANAQALGDVLKAGGVDLVTGGTDNHLLLVDLRPKGLKGAQVEQALERAGITCNKNGIPFDPEKPTITSGIRLGTPAGTTRGFGAAEFREVGRLI 389          
BLAST of CF833116 vs. ExPASy Swiss-Prot
Match: GLYA_THEMA (Serine hydroxymethyltransferase OS=Thermotoga maritima GN=glyA PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 3.540e-36
Identity = 82/212 (38.68%), Postives = 117/212 (55.19%), Query Frame = 2
Query:   11 NPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDS-SALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAV--------TLTLEIQKEYGKLLKD 619
            NP EY H+VT+TTHK+LRGPR G+I                   +    ++  +FP +QGGP  H I A AV  K+A T  FK Y KQV  NA  +      +GY +V+GGT+ HL L DL P  +TG   EK  + C ITVNKN +  +  S     G+RIGTPA+T+RG+ E++ E+I E +   +        T+  E+++E  K +++
Sbjct:  213 NPLEYAHVVTSTTHKTLRGPRGGLILTNDP--------------EIAKAVDKTIFPGIQGGPLMHVIAAKAVCFKEAMTEEFKEYQKQVVKNAKKMAEEFQKRGYRIVSGGTDTHLFLVDLTPKDITGKAAEKALESCGITVNKNTIPNEKRSPFVASGIRIGTPAVTTRGMKEEEMEEIAEMIDLVLSNVIDENGTVKPEVREEVSKKVRE 410          
BLAST of CF833116 vs. ExPASy Swiss-Prot
Match: GLYA_SALRD (Serine hydroxymethyltransferase OS=Salinibacter ruber (strain DSM 13855) GN=glyA PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 3.540e-36
Identity = 84/190 (44.21%), Postives = 108/190 (56.84%), Query Frame = 2
Query:   11 NPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXE--GAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAV 571
            +P  + H+VTTTTHK+LRGPR GMI                 G      + ++ AVFP  QGGP  H I A AV  K+A  P+F  Y +QV  NA A+G  L  +GY LV+ GT+NHLVL DLR  GLTG + E+  +   IT NKN V F D S     G+R+GTPAMT+RG    +F  + E + R +
Sbjct:  212 DPMPHTHVVTTTTHKTLRGPRGGMILLGDDYENPMGKTARKSGRTKMMSELLDSAVFPGTQGGPLMHVIAAKAVGFKEALKPSFAEYTQQVVDNAQAMGAELRERGYDLVSDGTDNHLVLIDLRNKGLTGKEAEQALEAAGITANKNMVPFDDKSPFVTSGLRLGTPAMTTRGFGPDEFAHVAEMIDRVL 401          
The following BLAST results are available for this feature:
BLAST of CF833116 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_DESRM2.075e-3644.21Serine hydroxymethyltransferase OS=Desulfotomaculu... [more]
GLYA_SILST2.711e-3643.46Serine hydroxymethyltransferase OS=Silicibacter sp... [more]
GLYA_PARD82.711e-3643.06Serine hydroxymethyltransferase OS=Parabacteroides... [more]
GLYA_GEOBB2.711e-3646.20Serine hydroxymethyltransferase OS=Geobacter bemid... [more]
GLYA_CHLP82.711e-3643.59Serine hydroxymethyltransferase OS=Chlorobaculum p... [more]
GLYA2_SULDN2.711e-3642.52Serine hydroxymethyltransferase 2 OS=Sulfurimonas ... [more]
GLYA2_BURPS2.711e-3645.41Serine hydroxymethyltransferase 2 OS=Burkholderia ... [more]
GLYA2_BURP12.711e-3645.41Serine hydroxymethyltransferase 2 OS=Burkholderia ... [more]
GLYA_THEMA3.540e-3638.68Serine hydroxymethyltransferase OS=Thermotoga mari... [more]
GLYA_SALRD3.540e-3644.21Serine hydroxymethyltransferase OS=Salinibacter ru... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_03A20_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa03A20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833116 ID=CF833116; Name=CF833116; organism=Citrus sinensis; type=EST; length=846bp
GGAAGCTGCAAACCCCTTTGAGTACTGTCACATAGTCACAACCACTACTC
ACAAGAGCTTGCGGGGTCCTAGGGCTGGTATGATCTTCTACCGGAAGGGT
CCTAAACCACCCAAGAAGGGCCAACCAGAGGGTGCGGTTTATGACTTTGA
AGACAAGATCAACTTTGCTGTCTTCCCATCCCTTCAAGGTGGTCCTCACA
ACCACCAGATTGGTGCTCTAGCTGTTGCCCTGAAACAGGCCTCGACCCCT
GCATTCAAGGCCTATGCGAAACAAGTCAAGGCCAATGCAGTTGCACTTGG
GAACTACCTGACGGGCAAGGGATACAGCCTTGTCACTGGTGGAACTGAGA
ACCACCTTGTTCTCTGGGATCTACGCCCTCTTGGATTGACTGGCAATAAG
GTTGAGAAGCTCTGTGACCTTTGCAACATTACTGTGAACAAGAATGCTGT
GTTTGGTGACAGCAGTGCCTTGGCCCCTGGAGGAGTAAGAATCGGTACTC
CTGCCATGACTTCCAGAGGTTTGTTGGAGAAGGACTTCGAGCAAATTGGA
GAGTTTCTTCACCGCGCTGTGACCCTCACGTTGGAAATTCAAAAGGAGTA
TGGAAAGCTCTTGAAGGACTTCAACAAGGGTCTGGTGAACAACAAGGACA
TCGAGGCCCTCAAGGCTGATGTTGAGAAGTTCGCCAGCTCATTTGACATG
CCCGGCTTTAAAATGTCCGAGATGAAGTACAAGGATTANGTCTCAAAGTA
TCATCATTATTGTTACTGTGTTGTTAGCAACTCTTTAGTGTTGAAAAACA
GAAAGAGAAGAAAAAAAATTGCATGCATCTTTGCCTTTTGTTGTCC
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