CF833464

Overview
NameCF833464
Unique NameCF833464
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length737
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF833464 vs. ExPASy Swiss-Prot
Match: RL4_BOVIN (60S ribosomal protein L4 OS=Bos taurus GN=RPL4 PE=2 SV=3)

HSP 1 Score: 273.863 bits (699), Expect = 6.459e-73
Identity = 132/213 (61.97%), Postives = 161/213 (75.59%), Query Frame = 2
Query:   98 AAARPLVTVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVY 736
            A ARPL++V S +G+    +   V LP V KA IRPDIV FVH+N+ KN+RQPYAVS+ AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WRRWHR++N  QKRY           P+LVM++GH+IE VPE+PLVV D  E  +KT  A+ +LK++ A+ D +K   SQ +R GKGKMRNRR I R+GP ++Y
Sbjct:    2 ACARPLISVYSEKGE---SSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCIIY 211          
BLAST of CF833464 vs. ExPASy Swiss-Prot
Match: RL4_MACFA (60S ribosomal protein L4 OS=Macaca fascicularis GN=RPL4 PE=2 SV=1)

HSP 1 Score: 273.092 bits (697), Expect = 1.102e-72
Identity = 132/213 (61.97%), Postives = 160/213 (75.12%), Query Frame = 2
Query:   98 AAARPLVTVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVY 736
            A ARPL++V S +G+    +   V LP V KA IRPDIV FVH+N+ KN+RQPYAVS+ AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WRRWHR++N  QKRY           P+LVM++GH IE VPE+PLVV D  E  +KT  A+ +LK++ A+ D +K   SQ +R GKGKMRNRR I R+GP ++Y
Sbjct:    2 ACARPLISVYSEKGE---SSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALAASALPALVMSKGHSIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCIIY 211          
BLAST of CF833464 vs. ExPASy Swiss-Prot
Match: RL4_PONAB (60S ribosomal protein L4 OS=Pongo abelii GN=RPL4 PE=2 SV=1)

HSP 1 Score: 272.322 bits (695), Expect = 1.879e-72
Identity = 132/213 (61.97%), Postives = 160/213 (75.12%), Query Frame = 2
Query:   98 AAARPLVTVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVY 736
            A ARPL++V S +G+    +   V LP V KA IRPDIV FVH+N+ KN+RQPYAVS+ AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WRRWHR++N  QKRY           P+LVM++GH+IE VPE+PLVV D  E  +KT  A+ +LK++ A  D +K   SQ +R GKGKMRNRR I R+GP ++Y
Sbjct:    2 ACARPLISVYSEKGE---SSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKARNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCIIY 211          
BLAST of CF833464 vs. ExPASy Swiss-Prot
Match: RL4A_SCHPO (60S ribosomal protein L4-A OS=Schizosaccharomyces pombe GN=rpl4a PE=1 SV=2)

HSP 1 Score: 270.011 bits (689), Expect = 9.327e-72
Identity = 128/213 (60.09%), Postives = 164/213 (77.00%), Query Frame = 2
Query:   98 AAARPLVTVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVY 736
            AAARP V++ S +G ++   S T+ LP V KA IRPD+V  VH+ ++KN RQPYAVS+KAGHQTSAESWGTGRA++RIPRV GGGTHR+GQ AFGNMCR GRMFAPTK WR+WH K+N N+KRY           PSL++ARGH+IE +PE+PLVV D+ +S +KT  A+ +LK+I AY D  K  +S+ +R GKGK+RNRR++ R+GPLVV+
Sbjct:    2 AAARPTVSIYSKDGSVS---SETIALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAISSAVAASGVPSLLLARGHRIEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVVKVANSRKLRAGKGKLRNRRHVQRRGPLVVF 211          
BLAST of CF833464 vs. ExPASy Swiss-Prot
Match: RL4B_SCHPO (60S ribosomal protein L4-B OS=Schizosaccharomyces pombe GN=rpl4b PE=2 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 4.629e-71
Identity = 127/213 (59.62%), Postives = 164/213 (77.00%), Query Frame = 2
Query:   98 AAARPLVTVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVY 736
            AAARP V++ + +G ++   S T+ LP V KA IRPD+V  VH+ ++KN RQPYAVS+KAGHQTSAESWGTGRA++RIPRV GGGTHR+GQ AFGNMCR GRMFAPTK WR+WH K+N N+KRY           PSL++ARGH+IE +PE+PLVV D+ +S +KT  A+ +LK+I AY D  K  +S+ +R GKGK+RNRR++ R+GPLVV+
Sbjct:    2 AAARPTVSIYNKDGSVS---SETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAIASAVAASGVPSLLLARGHRIEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVIKVANSRKLRAGKGKLRNRRHVQRRGPLVVF 211          
BLAST of CF833464 vs. ExPASy Swiss-Prot
Match: RL4B_YEAST (60S ribosomal protein L4-B OS=Saccharomyces cerevisiae GN=RPL4B PE=1 SV=2)

HSP 1 Score: 257.299 bits (656), Expect = 6.256e-68
Identity = 127/211 (60.19%), Postives = 157/211 (74.41%), Query Frame = 2
Query:  104 ARPLVTVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVY 736
            +RP VTV SL G+   +A   +PLP V  A IRPDIV  V ++++KN RQ YAVS+KAGHQTSAESWGTGRAV+RIPRV GGGT R+GQGAFGNMCRGGRMFAPTK WR+W+ K+N N+KRY            SLV+ARGH++E +PE+PLVVS   ES++KT  A+  LK +GA++D  K   S+ +R GKGK RNRR+  R+GPLVVY
Sbjct:    2 SRPQVTVHSLTGEATANA---LPLPAVFSAPIRPDIVHTVFTSVNKNKRQAYAVSEKAGHQTSAESWGTGRAVARIPRVGGGGTGRSGQGAFGNMCRGGRMFAPTKTWRKWNVKVNHNEKRYATASAIAATAVASLVLARGHRVEKIPEIPLVVSTDLESIQKTKEAVAALKAVGAHSDLLKVLKSKKLRAGKGKYRNRRWTQRRGPLVVY 209          
BLAST of CF833464 vs. ExPASy Swiss-Prot
Match: RL4A_YEAST (60S ribosomal protein L4-A OS=Saccharomyces cerevisiae GN=RPL4A PE=1 SV=4)

HSP 1 Score: 257.299 bits (656), Expect = 6.256e-68
Identity = 127/211 (60.19%), Postives = 157/211 (74.41%), Query Frame = 2
Query:  104 ARPLVTVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVY 736
            +RP VTV SL G+   +A   +PLP V  A IRPDIV  V ++++KN RQ YAVS+KAGHQTSAESWGTGRAV+RIPRV GGGT R+GQGAFGNMCRGGRMFAPTK WR+W+ K+N N+KRY            SLV+ARGH++E +PE+PLVVS   ES++KT  A+  LK +GA++D  K   S+ +R GKGK RNRR+  R+GPLVVY
Sbjct:    2 SRPQVTVHSLTGEATANA---LPLPAVFSAPIRPDIVHTVFTSVNKNKRQAYAVSEKAGHQTSAESWGTGRAVARIPRVGGGGTGRSGQGAFGNMCRGGRMFAPTKTWRKWNVKVNHNEKRYATASAIAATAVASLVLARGHRVEKIPEIPLVVSTDLESIQKTKEAVAALKAVGAHSDLLKVLKSKKLRAGKGKYRNRRWTQRRGPLVVY 209          
BLAST of CF833464 vs. ExPASy Swiss-Prot
Match: RL4_DROME (60S ribosomal protein L4 OS=Drosophila melanogaster GN=RpL4 PE=2 SV=2)

HSP 1 Score: 248.825 bits (634), Expect = 2.225e-65
Identity = 124/211 (58.77%), Postives = 156/211 (73.93%), Query Frame = 2
Query:  104 ARPLVTVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVY 736
            ARPLV+V + + + A D +  + LP V KA IRPD+V  VH  + +N+RQ YAVS+ AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK +RRWHRK+NVNQ+RY           P+LV ++GH I+ V E PLVVSD  + V+KT  A+  L+++  +AD +K   SQ  R G+G MR+RR I+R+GPLVVY
Sbjct:    6 ARPLVSVYTEKNEPAKDKN--ICLPAVFKAPIRPDVVNEVHQLLRRNNRQAYAVSELAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTFRRWHRKVNVNQRRYALVSAIAASGVPALVQSKGHVIDGVSEFPLVVSDEVQKVQKTKQAVIFLRRLKIWADIQKVYKSQRFRAGRGTMRDRRRIARRGPLVVY 214          
BLAST of CF833464 vs. ExPASy Swiss-Prot
Match: RL4_DICDI (60S ribosomal protein L4 OS=Dictyostelium discoideum GN=rpl4 PE=1 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 3.796e-65
Identity = 122/210 (58.10%), Postives = 153/210 (72.86%), Query Frame = 2
Query:  107 RPLVTVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVV-SDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVV 733
            RP V V   +  +       V LP+V+   IRPD+V FVH+N++KN+RQ Y  +  AG QTSAESWGTGRAV+RIPRVPG GTHR+GQGAFGNMCRGGRM+ P K WRRW+RK+NVNQKRY           P+LVMARGH+I  + E+PLV+ ++S ++++KT AA+++LK+I AYAD  K  DS+ IR G GK RNRRY  RKGPLVV
Sbjct:    4 RPFVQVFDAQNKVV----GKVKLPNVLTTPIRPDLVNFVHTNLNKNARQAYGAAPYAGEQTSAESWGTGRAVARIPRVPGSGTHRSGQGAFGNMCRGGRMYGPNKTWRRWNRKVNVNQKRYAVVSALAASAVPALVMARGHRINGINEVPLVIANESVDTLQKTKAAVELLKKINAYADVTKVIDSKHIRAGAGKARNRRYKVRKGPLVV 209          
BLAST of CF833464 vs. ExPASy Swiss-Prot
Match: RL4_TRYBB (60S ribosomal protein L4 OS=Trypanosoma brucei brucei GN=RPL4 PE=3 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 2.460e-64
Identity = 121/210 (57.62%), Postives = 151/210 (71.90%), Query Frame = 2
Query:  104 ARPLVTVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVV 733
            ARP V+V S   D       T  LP V  A IR D+V FVH+N++KNSRQPYAV++ +G + S ESWGTGRAV+RIPR+ GGGT  +G GAFGNMCRGGRMFAPTKI+RRWHRKIN++QKR+           P+LVM+RGHKIE V E+PLVV D   + EKT  A+  LK +GA  D  +  DS+ IR G+GKMRNRRY++R+GP++V
Sbjct:    3 ARPSVSVYSASEDKVV---GTCSLPAVFTAPIRHDVVQFVHTNMAKNSRQPYAVNRLSGMKHSTESWGTGRAVARIPRIHGGGTSMSGAGAFGNMCRGGRMFAPTKIFRRWHRKINLHQKRFAVVSALAASSLPALVMSRGHKIENVAEVPLVVEDGVRAYEKTKEAMTFLKTVGAIDDVNRVNDSRQIRAGRGKMRNRRYVARRGPMLV 209          
The following BLAST results are available for this feature:
BLAST of CF833464 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
RL4_BOVIN6.459e-7361.9760S ribosomal protein L4 OS=Bos taurus GN=RPL4 PE=... [more]
RL4_MACFA1.102e-7261.9760S ribosomal protein L4 OS=Macaca fascicularis GN... [more]
RL4_PONAB1.879e-7261.9760S ribosomal protein L4 OS=Pongo abelii GN=RPL4 P... [more]
RL4A_SCHPO9.327e-7260.0960S ribosomal protein L4-A OS=Schizosaccharomyces ... [more]
RL4B_SCHPO4.629e-7159.6260S ribosomal protein L4-B OS=Schizosaccharomyces ... [more]
RL4B_YEAST6.256e-6860.1960S ribosomal protein L4-B OS=Saccharomyces cerevi... [more]
RL4A_YEAST6.256e-6860.1960S ribosomal protein L4-A OS=Saccharomyces cerevi... [more]
RL4_DROME2.225e-6558.7760S ribosomal protein L4 OS=Drosophila melanogaste... [more]
RL4_DICDI3.796e-6558.1060S ribosomal protein L4 OS=Dictyostelium discoide... [more]
RL4_TRYBB2.460e-6457.6260S ribosomal protein L4 OS=Trypanosoma brucei bru... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_03K16_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa03K16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833464 ID=CF833464; Name=CF833464; organism=Citrus sinensis; type=EST; length=737bp
TTCAATAAAACCCCTATTAACTTAACGCTGCGGCTCTGCCCCCTTCCCCA
TATATCCCCCAACAGAAAAAAACACACACAAACCAAAACCAATGGCCGCC
GCCGCCCGTCCTCTTGTAACCGTCCAGTCTTTGGAAGGTGACATGGCCAC
CGACGCAAGCTCCACCGTCCCCTTGCCCGATGTCATGAAGGCCTCTATCC
GACCCGACATCGTGGGCTTCGTTCACTCTAACATCTCCAAGAACAGCCGC
CAGCCTTACGCCGTTTCCAAGAAGGCAGGGCACCAGACCTCCGCCGAATC
ATGGGGTACCGGTCGCGCCGTCTCCCGTATCCCCCGAGTTCCCGGAGGCG
GTACCCACCGCGCCGGCCAGGGAGCCTTCGGTAACATGTGTCGCGGTGGT
CGCATGTTCGCTCCCACAAAGATCTGGCGCCGATGGCACCGTAAGATCAA
CGTCAATCAGAAGCGATATGCCATCGTTTCCGCCATTGCCGCCTCCGCTG
TCCCCTCACTTGTGATGGCCCGTGGTCACAAGATCGAGACTGTTCCGGAA
ATGCCCCTGGTCGTCAGTGATTCCGCCGAGAGTGTTGAGAAAACATCAGC
TGCTCTTAAAGTTCTGAAGCAGATCGGTGCATATGCTGACGCCGAGAAGG
CGAAGGACAGCCAGGGGATTCGCCCTGGAAAGGGTAAAATGAGAAATAGA
CGTTACATTTCTCGCAAGGGCCCGCTTGTTGTGTACT
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