CF833464
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF833464 vs. ExPASy Swiss-Prot
Match: RL4_CAEEL (60S ribosomal protein L4 OS=Caenorhabditis elegans GN=rpl-4 PE=1 SV=3) HSP 1 Score: 228.024 bits (580), Expect = 4.065e-59 Identity = 114/212 (53.77%), Postives = 146/212 (68.87%), Query Frame = 2 Query: 101 AARPLVTVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVY 736 AARPLVTV + + S + LP V + IRPD+V F+ + +N RQ +AV+ KAG Q SAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGG MFAP K++RRWHR +N+ QKRY P+L+ ARGH I+ V E+PLVVSD ES KT A+ L++ +AD EK +S+ R GKGK+RNR++ + GP+V+Y Sbjct: 2 AARPLVTVYDEKYEAT---QSQIRLPAVFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAGKQHSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPLKVFRRWHRNVNIAQKRYAVSSAIAASGIPALLQARGHVIDQVAEVPLVVSDKVESFRKTKEAVVFLRRSHLWADIEKVYNSKRNRAGKGKLRNRQHKQKLGPVVIY 210
BLAST of CF833464 vs. ExPASy Swiss-Prot
Match: RL4_ENTHI (60S ribosomal protein L4 (Fragments) OS=Entamoeba histolytica GN=RPL4 PE=2 SV=2) HSP 1 Score: 149.058 bits (375), Expect = 2.400e-35 Identity = 81/163 (49.69%), Postives = 101/163 (61.96%), Query Frame = 2 Query: 272 KAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLV--------VSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVY 736 KAG Q SA SWGTGRAV+RIPR+ G G+ R GQGAFGNM R G MF+P K +R+W RK +R+ P+LV ARGH I VP++P V S S ++KT A+ +LK+I AY+D K S+ IR G+GKMR R+ RKGPLVVY Sbjct: 3 KAGKQHSAISWGTGRAVARIPRISGSGSGRNGQGAFGNMTRKGHMFSPLKNFRKWQRKTPKQMRRFAVASCIAASAVPALVSARGHHIAGVPQLPSVSFLQPQFHSSKSISVIKKTKQAVYLLKKINAYSDVLKVIASKTIRAGQGKMRGRKIKERKGPLVVY 165
BLAST of CF833464 vs. ExPASy Swiss-Prot
Match: RL4_METTH (50S ribosomal protein L4P OS=Methanobacterium thermoautotrophicum GN=rpl4p PE=3 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 1.968e-29 Identity = 70/206 (33.98%), Postives = 111/206 (53.88%), Query Frame = 2 Query: 116 VTVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVV 733 + V SLEG+ A + LP++ RPD++ + QP+ AG +TSA+S+G GR V+ +PR+ G + AF GGR P + + +H +IN ++R LV ARGH+IE VP++PLVV D +++T+ +V +++G D +A++ + IR GKGKMR R+Y + +GPL+V Sbjct: 3 IKVYSLEGE----AIDEMELPEIFNEEFRPDVIKRAVLSAQTARVQPWGPDPMAGKRTSAQSYGAGRGVAMVPRIKNGS-----RAAFVPQAVGGRRAHPPRPQKNYHERINRKERRLAIRSAVAATARKDLVEARGHRIENVPQLPLVVDDELSMIKRTADTREVFRKLGIMDDIVRAREGKKIRAGKGKMRGRKYRTPRGPLIV 199
BLAST of CF833464 vs. ExPASy Swiss-Prot
Match: RL4_METKA (50S ribosomal protein L4P OS=Methanopyrus kandleri GN=rpl4p PE=3 SV=1) HSP 1 Score: 128.642 bits (322), Expect = 3.356e-29 Identity = 75/205 (36.59%), Postives = 106/205 (51.71%), Query Frame = 2 Query: 122 VQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGG-RMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVV 733 V +LEG+ TV LP + +R D++ N RQPY +AG +TSAESWG G V+ +PRV G AG+ A GG + APT + W +++N ++R P V RGH I+ VP +P+VV D +S+ K + K +G +AD E+AK ++ IR GKGK R RRY+ K L+V Sbjct: 5 VFNLEGEEV----DTVELPSFFEEPVRKDLIRRAVLAAQANRRQPYGTDPRAGFRTSAESWGAGHGVAMVPRVKGRRHPAAGRAARVAQAVGGQKAHAPTP-EKDWTQRVNRKERRAALRSALAATAKPEFVKERGHVIDDVPHLPVVVVDELKSLNKAREVREFFKSVGLWADVERAKSNRRIRAGKGKRRGRRYVKPKSVLIV 204
BLAST of CF833464 vs. ExPASy Swiss-Prot
Match: RL4_METS3 (50S ribosomal protein L4P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl4p PE=3 SV=1) HSP 1 Score: 125.176 bits (313), Expect = 3.711e-28 Identity = 66/204 (32.35%), Postives = 108/204 (52.94%), Query Frame = 2 Query: 122 VQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVV 733 V S+EG++ + + LP + RPD++ + QP+ +AG +TSA+ WG+GR +R+PR+ G + AF M GGR PT+ + H KIN+ ++R+ LV RGH++ + ++P++V D SV+ T ++ + +G Y D +AK+ + IR G+GK R R+Y KGPL+V Sbjct: 5 VYSMEGEVKEE----IELPAIFNEEYRPDLIKRAVISAQTARVQPWGNDPEAGKRTSAKGWGSGRGTARVPRIKNGS-----KAAFVPMAVGGRRAHPTRAEKNHHEKINIKERRFAIRSAVAATANKELVENRGHRLGDLEQVPIIVEDDICSVKTTKQTREIFQNLGVYDDITRAKEGKRIRAGRGKTRGRKYKKVKGPLLV 199
BLAST of CF833464 vs. ExPASy Swiss-Prot
Match: RL4_METST (50S ribosomal protein L4P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl4p PE=3 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 1.194e-26 Identity = 65/206 (31.55%), Postives = 108/206 (52.43%), Query Frame = 2 Query: 116 VTVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVV 733 + V SL+GD+ + + LP++ + RPD++ ++ QP+ AG +T+AES+G+GR + +PRV G + + AF GGR P ++ +H KIN ++ LV RGH++ + ++P V+ D E+V+ T ++ K +G D +AK + I+ GKGK+R R+Y + KGPLVV Sbjct: 4 INVYSLKGDITEE----IELPEIFEEEYRPDVIKRAVISMQTARIQPWGTDPMAGKRTTAESFGSGRGAAMVPRVKG-----SSKAAFVPQAIGGRKAHPPRVNTIYHEKINKKERTLAIRSAIAATANKELVEQRGHQVSELEQIPFVIDDEIETVKTTKETREIFKDLGIMDDIVRAKKGRKIKSGKGKLRGRKYRTPKGPLVV 200
BLAST of CF833464 vs. ExPASy Swiss-Prot
Match: RL4_METMJ (50S ribosomal protein L4P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl4p PE=3 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 4.536e-26 Identity = 70/204 (34.31%), Postives = 106/204 (51.96%), Query Frame = 2 Query: 122 VQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVV 733 V++L G++A + + LP++ + RPD++ + QP+ + AG +TSAESWG+GR +++PR+ G + A GGR P K+ + ++IN +KR P LV RGH E ++PLV D E V +T + L +G YAD E+AK S+ +R G+G MR RRY RK L+V Sbjct: 5 VRTLTGEIAHE----IDLPEIFREEYRPDLIKRAVLALQSTRFQPHGTNPYAGMRTSAESWGSGRGAAQVPRLKNGS-----RVARVPQATGGRAAHPPKVEKILVKEINRKEKRKALRSAVAASTYPDLVRERGHLFEG--DLPLVFEDRFEEVTRTGDVIAALTALGVYADVERAKGSRKVRAGRGTMRGRRYKQRKSVLIV 197
BLAST of CF833464 vs. ExPASy Swiss-Prot
Match: RL4_METMP (50S ribosomal protein L4P OS=Methanococcus maripaludis GN=rpl4p PE=3 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 1.320e-25 Identity = 77/206 (37.38%), Postives = 103/206 (50.00%), Query Frame = 2 Query: 116 VTVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVV 733 V V +L+G D + LP V +A RPD++ + QP AG++TSA+S G G +R+ R G GAF GGR P K+ + +IN +K P +V ARGHKIE VP +PLVV+ ES+ KT L+V K + AD E+AKD IR G+GK+R R+YI K LVV Sbjct: 3 VKVYNLDGSEKGD----IELPAVFEAEYRPDLIKRAVISSLTAKLQPKGCDAFAGYRTSAKSIGKGHGKARVRRTAQGA------GAFVPQAVGGRRAHPPKVEKILFERINRKEKLKALASAIAASANPEIVSARGHKIEGVPSLPLVVNAEFESLVKTKEVLEVFKTLKLDADLERAKDGVKIRAGRGKLRGRKYIKPKSVLVV 198
BLAST of CF833464 vs. ExPASy Swiss-Prot
Match: RL4_PYRAE (50S ribosomal protein L4P OS=Pyrobaculum aerophilum GN=rpl4p PE=3 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 2.940e-25 Identity = 67/179 (37.43%), Postives = 93/179 (51.96%), Query Frame = 2 Query: 197 IRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVV 733 IRPD++ + + QP V + AG + S ES+G G ++RIPR G R G F RGGR P K+ ++ H +IN +K+ S V ARGH +E VP +P+VV AE + + A K+ + +G + D E+A + IR GKGKMR RRY K LVV Sbjct: 52 IRPDLIRRAYLSALSARFQPKGVYEGAGKEHSCESFGVGLGIARIPRYKGSLWPR---GCFAPNTRGGRRAHPPKVEKKLHEEINKKEKKLAIRSAIAATAYRSWVAARGHVVEKVPSLPVVVVGDAEKINRAKEAKKLFEALGLWPDVERAAEGVKIRAGKGKMRGRRYKEPKSVLVV 227
BLAST of CF833464 vs. ExPASy Swiss-Prot
Match: RL4_METBU (50S ribosomal protein L4P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl4p PE=3 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 6.550e-25 Identity = 70/199 (35.18%), Postives = 96/199 (48.24%), Query Frame = 2 Query: 140 DMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGG-THRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVV 733 D++ ++ + LP+V RPD++ + N QPY AG QTSA SWG+GR V+++PR+ G R Q GGR P K KIN +KR LV ARGHK E+P V D+ E + K + L+ G Y D +AK+ + IR GKGK R R+Y +RK L+V Sbjct: 8 DLSGNSKGEIALPEVFSEIFRPDLIKKAVLSAQANRLQPYGTKLYAGMQTSAHSWGSGRGVAQVPRISNGSRVARIPQAV------GGRRAHPPKTETDRTEKINKKEKRLAVRSAIAATIDADLVKARGHKF--TAEVPFVADDAIEGLVKIKEVISFLQAAGLYDDIIRAKEGKHIRAGKGKRRGRKYKNRKSVLIV 198 The following BLAST results are available for this feature:
BLAST of CF833464 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 69
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CF833464 ID=CF833464; Name=CF833464; organism=Citrus sinensis; type=EST; length=737bpback to top |