CF833464

Overview
NameCF833464
Unique NameCF833464
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length737
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF833464 vs. ExPASy Swiss-Prot
Match: RL4_SULIA (50S ribosomal protein L4P OS=Sulfolobus islandicus (strain M.16.27) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.857e-20
Identity = 64/207 (30.92%), Postives = 99/207 (47.83%), Query Frame = 2
Query:  113 LVTVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVV 733
            LV   S+  D   +    V LP +    +R DI+  V      +S QP      AG +TSAES+G    ++R+PRV       +G+ A      GGR+  P  + ++   ++N  +K+               V ARGH  +     P+VV+D   S++  S   + L++IG Y D ++ K+   IR GKGKMR R+Y    GPL++
Sbjct:    5 LVKKNSVILDKDGNKVKEVELPFIFSFPVRKDIIRRVFLAEFTHSLQPKGRDPMAGKRTSAESFGINLGMARVPRVKN-----SGEAALAPNTVGGRLTFPPSVDKKLVEEVNDKEKQLAVISALSATADTVFVKARGHVFKDSVSFPIVVTDDIVSLKTASEVEEFLEKIGVYDDVKRVKERIRIRAGKGKMRGRKYKEPIGPLII 206          
BLAST of CF833464 vs. ExPASy Swiss-Prot
Match: RL4_THEVO (50S ribosomal protein L4P OS=Thermoplasma volcanium GN=rpl4p PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.344e-20
Identity = 61/206 (29.61%), Postives = 99/206 (48.06%), Query Frame = 2
Query:  116 VTVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVV 733
            V + S+ G+   +    + LP++   S+R D++      IS + RQPY  S  AG +    +   G  +SR+PR+ GG        A G     G+     +  ++ +  IN  +++               V  RGH+      +P+VV D+   ++KT  A+ +LK IG Y D  ++K+ + IR G+GKMRNRRY   K  L+V
Sbjct:    5 VPIYSINGEKRGE----IDLPEIFNYSVREDLIRKAFRAISLSLRQPYGSSPLAGLRRVGHTTKPGLGISRMPRIAGGSRVVGIASAVG-----GKSAHSPRSTKKLYVGINEKERKMAKFSAIAMTASADAVRKRGHRFSESLPLPVVVEDAVSGIKKTKDAVNLLKSIGLYEDILRSKEGKHIRAGRGKMRNRRYKVPKSLLIV 201          
BLAST of CF833464 vs. ExPASy Swiss-Prot
Match: RL4_SULIL (50S ribosomal protein L4P OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.082e-19
Identity = 64/207 (30.92%), Postives = 98/207 (47.34%), Query Frame = 2
Query:  113 LVTVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVV 733
            LV   S+  D   +    V LP +    +R DI+  V      +S QP      AG +TSAES+G    ++R+PRV       +G+ A      GGR+  P  + ++   + N  +K+               V ARGH  +     P+VV+D   S++  S   + L++IG Y D ++ K+   IR GKGKMR R+Y    GPL++
Sbjct:    5 LVKKNSVILDKDGNKVKEVELPFIFSFPVRKDIIRRVFLAEFTHSLQPKGRDPMAGKRTSAESFGINLGMARVPRVKN-----SGEAALAPNTVGGRLTFPPSVDKKLVEEANDKEKQLAVISALSATADKVFVKARGHVFKDSVSFPIVVTDDIVSLKTASEVEEFLEKIGVYDDVKRVKERIRIRAGKGKMRGRKYKESIGPLII 206          
BLAST of CF833464 vs. ExPASy Swiss-Prot
Match: RL4_NATPD (50S ribosomal protein L4P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.082e-19
Identity = 66/205 (32.20%), Postives = 96/205 (46.83%), Query Frame = 2
Query:  119 TVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVV 733
            TV+ L+GD A +    V LP V +   RPD++         N  Q     + AG +T AES G+GR ++ +PR   G      Q         GR   P K  +     IN  +++               V  RGH+ +   ++PLVVSD  E + KT  A+ VL+ +G Y D E+A+D + +R G+G  R R+Y   K  LVV
Sbjct:    4 TVRDLDGDDAGE----VELPAVFETDYRPDLIKRAVLAAQANRIQDTGTDEYAGLRTPAESPGSGRGMAHVPR-QNGRAREVPQAV------SGRPAHPPKAEKDRGLDINTKERKLATRSAIAATANADRVEERGHEFDEETDLPLVVSDEFEDLVKTQEAVDVLEALGVYDDIERAEDGKTVRAGRGTTRGRKYTEPKSVLVV 197          
BLAST of CF833464 vs. ExPASy Swiss-Prot
Match: RL4_SULTO (50S ribosomal protein L4P OS=Sulfolobus tokodaii GN=rpl4p PE=3 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 4.112e-19
Identity = 59/198 (29.80%), Postives = 94/198 (47.47%), Query Frame = 2
Query:  140 DMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVV 733
            D+  +    + LP      +R D++  V  +    + QP      AG +TSA S+G    ++R+PRV        G+ A      GGR+  P  + ++   ++N  +K+             + V  RGH + ++  +P++V D    + KT   ++VL+ +  Y D E+ KD   IR GKGKMR RRY   KGPL V
Sbjct:   14 DLKGNKVEEIELPIFFSYPVRKDLIRRVFISEFTKALQPKGRDPMAGKRTSALSFGINLGLARVPRVK-----TTGEAALAPNTVGGRLAFPPTVEKKLVEEVNKKEKKLAIISALSATANMNFVKNRGH-VFSIDTLPIIVVDDITKLTKTKEIIEVLESLKVYEDVERVKDRIRIRSGKGKMRGRRYKEPKGPLFV 205          
BLAST of CF833464 vs. ExPASy Swiss-Prot
Match: RL4_METJA (50S ribosomal protein L4P OS=Methanocaldococcus jannaschii GN=rpl4p PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.665e-18
Identity = 61/194 (31.44%), Postives = 90/194 (46.39%), Query Frame = 2
Query:  152 DASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVV 733
            +A   + LP V +   RPD++     +      QP      AG +TSA++ G G   +R+ RVP G   R  Q        GGR   P K+ +    ++N  ++             P LV  RGH  ET   +P++V  S E ++KT     V +++G   D  +AK+   IR GKGKMR R+Y   +  LVV
Sbjct:   11 EAVKEIDLPAVFEEEYRPDLIKRAFLSAFTARLQPKGSDPLAGLRTSAKNIGKGHGRARVDRVPQGWAARVPQAV------GGRRAHPPKVEKILWERVNKKERIKAIKSAIAATANPELVKERGHVFET-ENLPIIVESSFEELQKTKDVFAVFEKLGISDDVIRAKNGIKIRAGKGKMRGRKYKKPRSILVV 197          
BLAST of CF833464 vs. ExPASy Swiss-Prot
Match: RL4_AERPE (50S ribosomal protein L4P OS=Aeropyrum pernix GN=rpl4p PE=3 SV=3)

HSP 1 Score: 90.5077 bits (223), Expect = 1.013e-17
Identity = 60/191 (31.41%), Postives = 89/191 (46.60%), Query Frame = 2
Query:  164 TVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSA-ESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVV 733
            +V LP + +  +R D++     +      QP      AG +TSA S G GR V+R+PR+ G     + + A  NM RGGR   P ++ +     IN  +KR              LV  RGH+  +   +P+V+  S    +     A  +L+ +G Y D  +AK+ +    GKGKMR RRY   K  L V
Sbjct:   28 SVVLPQIFRFPVRKDLIRRAFLSEFTARLQPKGRDPMAGKRTSAVSLGVGRGVARVPRIKG-----SLRAALVNMARGGRAAHPPRVEKVLKEYINKKEKRLATISAISATSREDLVRQRGHRF-SAETLPIVLDSSVLAKISTAREARSLLESVGVYEDVLRAKEGKRYNAGKGKMRGRRYKVPKSVLFV 212          
BLAST of CF833464 vs. ExPASy Swiss-Prot
Match: RL4_NANEQ (50S ribosomal protein L4P OS=Nanoarchaeum equitans GN=rpl4p PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.112e-15
Identity = 65/199 (32.66%), Postives = 91/199 (45.73%), Query Frame = 2
Query:  167 VPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSA------ESWGT--GRAVSRIPRVPGGGTHRAGQGAFGNMCRG--GRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVV 733
            + LP      IR D++      I  + RQPY  S  AG Q SA       SW T  GR +SR+ R               N+ +   G+   P K  + W+ KIN  ++R              LV ARGH I+    +P+VV D  E + KT    ++L ++G   + E+  + +  R GKGK R R YI RKGPL+V
Sbjct:   16 IELPPQFNEKIRFDVIKRAFLAIQSHKRQPYGASPIAGKQHSAWTSKRRRSWRTSYGRGISRVSRAILRRHGALFYWVARNIAQAVKGKKAHPPKAEKDWYEKINKKERRLAIRSALAATKELDLVKARGHIIDK--PVPIVV-DGLEQLRKTKEIQQLLLKLGLEKELERVYEIKR-RAGKGKRRGRAYIERKGPLIV 210          
BLAST of CF833464 vs. ExPASy Swiss-Prot
Match: RL4_HALMA (50S ribosomal protein L4P OS=Haloarcula marismortui GN=rpl4p PE=1 SV=4)

HSP 1 Score: 82.8037 bits (203), Expect = 2.112e-15
Identity = 59/196 (30.10%), Postives = 94/196 (47.96%), Query Frame = 2
Query:  119 TVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRY 706
            T+  L+G+  TD    V LPDV +  +R D++G        N +Q Y   + AG +T AES+G+GR  + +P+   G   R  Q         GR   P K  +     +N  +++              LV  RGH+ +   E+P+VVSD  E + KT   + +L+ +  +AD ++A D   I+ G+G  R R+Y
Sbjct:    4 TIYDLDGN--TDGE--VDLPDVFETPVRSDLIGKAVRAAQANRKQDYGSDEYAGLRTPAESFGSGRGQAHVPK-QDGRARRVPQAV------KGRSAHPPKTEKDRSLDLNDKERQLAVRSALAATADADLVADRGHEFDR-DEVPVVVSDDFEDLVKTQEVVSLLEALDVHADIDRA-DETKIKAGQGSARGRKY 186          
The following BLAST results are available for this feature:
BLAST of CF833464 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
RL4_SULIA4.857e-2030.9250S ribosomal protein L4P OS=Sulfolobus islandicus... [more]
RL4_THEVO6.344e-2029.6150S ribosomal protein L4P OS=Thermoplasma volcaniu... [more]
RL4_SULIL1.082e-1930.9250S ribosomal protein L4P OS=Sulfolobus islandicus... [more]
RL4_NATPD1.082e-1932.2050S ribosomal protein L4P OS=Natronomonas pharaoni... [more]
RL4_SULTO4.112e-1929.8050S ribosomal protein L4P OS=Sulfolobus tokodaii G... [more]
RL4_METJA2.665e-1831.4450S ribosomal protein L4P OS=Methanocaldococcus ja... [more]
RL4_AERPE1.013e-1731.4150S ribosomal protein L4P OS=Aeropyrum pernix GN=r... [more]
RL4_NANEQ2.112e-1532.6650S ribosomal protein L4P OS=Nanoarchaeum equitans... [more]
RL4_HALMA2.112e-1530.1050S ribosomal protein L4P OS=Haloarcula marismortu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_03K16_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa03K16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833464 ID=CF833464; Name=CF833464; organism=Citrus sinensis; type=EST; length=737bp
TTCAATAAAACCCCTATTAACTTAACGCTGCGGCTCTGCCCCCTTCCCCA
TATATCCCCCAACAGAAAAAAACACACACAAACCAAAACCAATGGCCGCC
GCCGCCCGTCCTCTTGTAACCGTCCAGTCTTTGGAAGGTGACATGGCCAC
CGACGCAAGCTCCACCGTCCCCTTGCCCGATGTCATGAAGGCCTCTATCC
GACCCGACATCGTGGGCTTCGTTCACTCTAACATCTCCAAGAACAGCCGC
CAGCCTTACGCCGTTTCCAAGAAGGCAGGGCACCAGACCTCCGCCGAATC
ATGGGGTACCGGTCGCGCCGTCTCCCGTATCCCCCGAGTTCCCGGAGGCG
GTACCCACCGCGCCGGCCAGGGAGCCTTCGGTAACATGTGTCGCGGTGGT
CGCATGTTCGCTCCCACAAAGATCTGGCGCCGATGGCACCGTAAGATCAA
CGTCAATCAGAAGCGATATGCCATCGTTTCCGCCATTGCCGCCTCCGCTG
TCCCCTCACTTGTGATGGCCCGTGGTCACAAGATCGAGACTGTTCCGGAA
ATGCCCCTGGTCGTCAGTGATTCCGCCGAGAGTGTTGAGAAAACATCAGC
TGCTCTTAAAGTTCTGAAGCAGATCGGTGCATATGCTGACGCCGAGAAGG
CGAAGGACAGCCAGGGGATTCGCCCTGGAAAGGGTAAAATGAGAAATAGA
CGTTACATTTCTCGCAAGGGCCCGCTTGTTGTGTACT
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