CF834004

Overview
NameCF834004
Unique NameCF834004
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length565
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834004 vs. ExPASy Swiss-Prot
Match: COMT1_MAIZE (Caffeic acid 3-O-methyltransferase OS=Zea mays PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 3.349e-32
Identity = 64/118 (54.24%), Postives = 78/118 (66.10%), Query Frame = 2
Query:  164 KHTKGDMFQSVPKGDAIFMKWILHDWNDEHCLKLLKNCCKSIPEDGKVIVVESMLPEVPNTSIESKSNSHFDVLMMIHCPGGKERTRHEFMTLATGAGFSGMSCERAIGNFWVMEFYK 517
            +H  GDMF SVP GDAI MKWILHDW+D HC  LLKNC  ++PE+GKVIVVE +LP     + +++   H D++M+ H PGGKER   EF  LA GAGFSG        N W +EF K
Sbjct:  247 RHVGGDMFASVPAGDAILMKWILHDWSDAHCATLLKNCYDALPENGKVIVVECVLPVNTEATPKAQGVFHVDMIMLAHNPGGKERYEREFRELAKGAGFSGFKATYIYANAWAIEFIK 364          
BLAST of CF834004 vs. ExPASy Swiss-Prot
Match: OMT1_ORYSJ (Quercetin 3-O-methyltransferase 1 OS=Oryza sativa subsp. japonica GN=ROMT-9 PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.273e-31
Identity = 63/119 (52.94%), Postives = 79/119 (66.39%), Query Frame = 2
Query:  164 KHTKGDMFQSVPKG-DAIFMKWILHDWNDEHCLKLLKNCCKSIPEDGKVIVVESMLPEVPNTSIESKSNSHFDVLMMIHCPGGKERTRHEFMTLATGAGFSGMSCERAIGNFWVMEFYK 517
            +H  GDMF SVP+G DAI MKWILHDW+DEHC +LLKNC  ++PE GKV+VVE +LPE  + +   +   H D++M+ H PGGKER   EF  LA  AGF+G        N W +EF K
Sbjct:  250 EHVGGDMFASVPRGGDAILMKWILHDWSDEHCARLLKNCYDALPEHGKVVVVECVLPESSDATAREQGVFHVDMIMLAHNPGGKERYEREFRELARAAGFTGFKATYIYANAWAIEFTK 368          
BLAST of CF834004 vs. ExPASy Swiss-Prot
Match: COMT1_SACOF (Caffeic acid 3-O-methyltransferase OS=Saccharum officinarum GN=COMT PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.171e-31
Identity = 62/118 (52.54%), Postives = 78/118 (66.10%), Query Frame = 2
Query:  164 KHTKGDMFQSVPKGDAIFMKWILHDWNDEHCLKLLKNCCKSIPEDGKVIVVESMLPEVPNTSIESKSNSHFDVLMMIHCPGGKERTRHEFMTLATGAGFSGMSCERAIGNFWVMEFYK 517
            +H  GDMF+SVP GDAI MKWILHDW+D HC  LLKNC  ++PE+GKVI+VE +LP       +++   H D++M+ H PGG+ER   EF  LA GAGFSG        N W +EF K
Sbjct:  245 QHVGGDMFKSVPAGDAILMKWILHDWSDAHCATLLKNCYDALPENGKVIIVECVLPVNTEAVPKAQGVFHVDMIMLAHNPGGRERYEREFHDLAKGAGFSGFKATYIYANAWAIEFIK 362          
BLAST of CF834004 vs. ExPASy Swiss-Prot
Match: IMT1_MESCR (Inositol 4-methyltransferase OS=Mesembryanthemum crystallinum GN=IMT1 PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.008e-28
Identity = 54/118 (45.76%), Postives = 81/118 (68.64%), Query Frame = 2
Query:  164 KHTKGDMFQSVPKGDAIFMKWILHDWNDEHCLKLLKNCCKSIPEDGKVIVVESMLPEVPNTSIESKSNSHFDVLMMIHCPGGKERTRHEFMTLATGAGFSGMSCERAIGNFWVMEFYK 517
            +H  G+MF+S+P+ DAIFMKW+LHDW+DEHC+K+L  C +S+ + GK+I+VES++P +P  ++ES      D   ++H  GGKER++ +F  LA+  GFS +       + WVME YK
Sbjct:  247 EHVGGNMFESIPQADAIFMKWVLHDWSDEHCVKILNKCYESLAKGGKIILVESLIPVIPEDNLESHMVFSLDCHTLVHNQGGKERSKEDFEALASKTGFSTVDVICCAYDTWVMELYK 364          
BLAST of CF834004 vs. ExPASy Swiss-Prot
Match: COMT1_EUCGL (Caffeic acid 3-O-methyltransferase (Fragment) OS=Eucalyptus globulus GN=COMT1 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 3.965e-25
Identity = 48/86 (55.81%), Postives = 63/86 (73.26%), Query Frame = 2
Query:  164 KHTKGDMFQSVPKGDAIFMKWILHDWNDEHCLKLLKNCCKSIPEDGKVIVVESMLPEVPNTSIESKSNSHFDVLMMIHCPGGKERT 421
            +H  GDMF ++P GDA+FMKWI HDW+DEHC KLLKNC  ++P +G+VIV E +LP  P+ S+ +K   H D +M+ H  GGKERT
Sbjct:  228 EHVGGDMFVNIPNGDAVFMKWICHDWSDEHCAKLLKNCYDALPVNGRVIVAEYILPAYPDQSLSTKGVIHMDCIMLTHFSGGKERT 313          
BLAST of CF834004 vs. ExPASy Swiss-Prot
Match: SMT_COPJA ((S)-scoulerine 9-O-methyltransferase OS=Coptis japonica GN=SMT PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.507e-24
Identity = 56/118 (47.46%), Postives = 75/118 (63.56%), Query Frame = 2
Query:  164 KHTKGDMFQSVPKGDAIFMKWILHDWNDEHCLKLLKNCCKSIPEDGKVIVVESMLPEVPNTSIESKSNSHFDVLMMIHCPGGKERTRHEFMTLATGAGFSGMSCERAIGNFWVMEFYK 517
            +H  GDMF+ VP    I +KW+LHDW+D+  +K+LKNC K++PE+G VIV+E +LP+V   + ES +    D+LMM   PGGKERT  EF  LA  AGF+            VMEF+K
Sbjct:  261 EHVPGDMFEGVPNAQNILLKWVLHDWDDDRSIKILKNCWKALPENGTVIVIEFVLPQVLGNNAESFNALTPDLLMMALNPGGKERTTIEFDGLAKAAGFAETKFFPISQGLHVMEFHK 378          
BLAST of CF834004 vs. ExPASy Swiss-Prot
Match: CHOMT_MEDSA (Isoliquiritigenin 2'-O-methyltransferase OS=Medicago sativa PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.507e-24
Identity = 60/120 (50.00%), Postives = 82/120 (68.33%), Query Frame = 2
Query:  164 KHTKGDMFQSVPKGDAIFMKWILHDWNDEHCLKLLKNCCKSIPEDGKVIVVESMLPEVPNTSIESKSNSHFDVLMMIHCPGGKERTRHEFMTLATGAGFS--GMSCERAIGNFWVMEFYK 517
            +H  GDMF SVP+GDA+ +K + H+W+DE C++ L NC K++  +GKVI+VE +LPE PNTS ESK  S  D LM I   GG+ERT  ++  L+  +GFS   ++C RA  +  VMEFYK
Sbjct:  255 EHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFI-TVGGRERTEKQYEKLSKLSGFSKFQVAC-RAFNSLGVMEFYK 372          
BLAST of CF834004 vs. ExPASy Swiss-Prot
Match: CVMT1_OCIBA (Chavicol O-methyltransferase OS=Ocimum basilicum GN=CVOMT1 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 5.191e-17
Identity = 46/124 (37.10%), Postives = 73/124 (58.87%), Query Frame = 2
Query:  143 IESPNQSKHTKGDMFQSVPKGDAIFMKWILHDWNDEHCLKLLKNCCKSIPEDGKVIVVESMLPEVPNTSIESKSNSHFDVLMMIHCPGGKERTRHEFMTLATGAGFSGMSCERAIGNFWVMEFY 514
            +ES ++  +  GDMFQS+P  DAI +K+I+HDW+DE  LK+LK C  ++   GKVI+++ ++    +     +   HFD+ MM +    KERT +E+  L + AGF+      A G   ++E Y
Sbjct:  233 LESTDKLSYIGGDMFQSIPSADAILLKFIIHDWDDEEGLKILKRCKDAVGIGGKVIIIDVVVGVNHDVDEVLEDQLHFDMAMMSYF-NAKERTMNEWEKLISAAGFTSYKLTPAFGVRSLIEAY 355          
BLAST of CF834004 vs. ExPASy Swiss-Prot
Match: 4OMT_COPJA (3'-hydroxy-N-methyl-(S)-coclaurine 4'-O-methyltransferase OS=Coptis japonica PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.510e-16
Identity = 48/111 (43.24%), Postives = 69/111 (62.16%), Query Frame = 2
Query:  137 NKIESPNQSKHTKGDMFQSVPKGDAIFMKWILHDWNDEHCLKLLKNCCKSIPED-GKVIVVESMLPEVPNTSIESKSNSHFDVLMMIHCPGGKERTRHEFMTLATGAGFSG 466
            N  + PN  +   GDMF+SVP   AI +K ILHDWNDE  +K+LK C  ++P+D GKVI+V+  L E  +  + S +    D+ M+++  GGKERT+  +  +   AGFSG
Sbjct:  226 NSYDLPNIER-IGGDMFKSVPSAQAIILKLILHDWNDEDSIKILKQCRNAVPKDGGKVIIVDVALDEESDHEL-SSTRLILDIDMLVN-TGGKERTKEVWEKIVKSAGFSG 333          
BLAST of CF834004 vs. ExPASy Swiss-Prot
Match: 6OMT_COPJA ((RS)-norcoclaurine 6-O-methyltransferase OS=Coptis japonica PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 7.496e-16
Identity = 47/114 (41.23%), Postives = 70/114 (61.40%), Query Frame = 2
Query:  176 GDMFQSVPKGDAIFMKWILHDWNDEHCLKLLKNCCKSIP-EDGKVIVVESMLPEVPNTSIESKSNSHFDVLMMIHCPGGKERTRHEFMTLATGAGFSGMSCERAIGNFWVMEFY 514
            GDMF+ +PK DAI MK ILHDW+D+ C+++LK C +++P + GKVI+V+ +L  V +    +K     D+ MM++  GGKERT  E+  L   AG+ G    +      V+E Y
Sbjct:  234 GDMFKFIPKADAIMMKCILHDWDDKECIEILKRCKEAVPVKGGKVIIVDIVL-NVQSEHPYTKMRLTLDLDMMLN-TGGKERTEEEWKKLIHDAGYKGHKITQITAVQSVIEAY 345          
The following BLAST results are available for this feature:
BLAST of CF834004 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
COMT1_MAIZE3.349e-3254.24Caffeic acid 3-O-methyltransferase OS=Zea mays PE=... [more]
OMT1_ORYSJ1.273e-3152.94Quercetin 3-O-methyltransferase 1 OS=Oryza sativa ... [more]
COMT1_SACOF2.171e-3152.54Caffeic acid 3-O-methyltransferase OS=Saccharum of... [more]
IMT1_MESCR1.008e-2845.76Inositol 4-methyltransferase OS=Mesembryanthemum c... [more]
COMT1_EUCGL3.965e-2555.81Caffeic acid 3-O-methyltransferase (Fragment) OS=E... [more]
SMT_COPJA1.507e-2447.46(S)-scoulerine 9-O-methyltransferase OS=Coptis jap... [more]
CHOMT_MEDSA1.507e-2450.00Isoliquiritigenin 2'-O-methyltransferase OS=Medica... [more]
CVMT1_OCIBA5.191e-1737.10Chavicol O-methyltransferase OS=Ocimum basilicum G... [more]
4OMT_COPJA1.510e-1643.243'-hydroxy-N-methyl-(S)-coclaurine 4'-O-methyltran... [more]
6OMT_COPJA7.496e-1641.23(RS)-norcoclaurine 6-O-methyltransferase OS=Coptis... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_04L15_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa04L15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834004 ID=CF834004; Name=CF834004; organism=Citrus sinensis; type=EST; length=565bp
TTTTCTTTGGTTGATTTAAAGGTTTTCCAGTCCTTTAACAAGAGGGCATT
AATAAATTCAACAAGCCTAAGTTTAAATAACCCTTAATTCAAAGGGACAA
GCCAGACTCTTCATCTTCTTCAAGATCGCCAGTGTAAATAAAATAGAGAG
CCCAAATCAATCCAAACACACCAAAGGTGATATGTTCCAAAGTGTTCCAA
AAGGTGATGCCATTTTTATGAAGTGGATACTGCACGATTGGAATGATGAA
CATTGCTTGAAGTTGTTGAAGAATTGCTGCAAAAGCATTCCGGAAGATGG
AAAGGTAATCGTTGTGGAGTCAATGCTTCCAGAAGTTCCTAATACAAGCA
TTGAATCAAAATCAAATTCCCATTTTGACGTGCTTATGATGATTCATTGT
CCCGGTGGAAAGGAGAGAACAAGGCATGAATTCATGACCCTGGCTACTGG
CGCTGGTTTTAGTGGGATGAGTTGTGAACGTGCTATTGGTAATTTCTGGG
TTATGGAGTTCTATAAGTAGAGTGCTTGGCCATGCGTCCTAGAAATAAAG
CAAATCTTGTGTTAA
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