CF834177

Overview
NameCF834177
Unique NameCF834177
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length687
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834177 vs. ExPASy Swiss-Prot
Match: RSSA_ZYGRC (40S ribosomal protein S0 OS=Zygosaccharomyces rouxii (strain ATCC 2623 / CBS 732 / IFO 1130 / NBRC 1623 / NCYC 568) GN=RPS0 PE=3 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 6.165e-59
Identity = 111/193 (57.51%), Postives = 141/193 (73.06%), Query Frame = 1
Query:  112 DIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGT-IRPGHKWDVMVDLFFYR 687
            D Q++LAA  HLG +N     E YVFK R DG+ ++++GKTWEKL +AAR+I AI NP DI+  S+R +GQRAVLKF+ +T A  IAGR TPG+FTN +  SF EPRL+I+TDPR+D Q IKEA+  NIP IA  D DSP  YVD+ IP NN+GKHSIG +++LLAR VL++RG  +     W VM DL+FYR
Sbjct:   13 DAQLLLAANTHLGARNVQVHQEPYVFKTRPDGVNVVDVGKTWEKLVLAARIIAAIPNPEDIVAISSRTFGQRAVLKFSAHTGATPIAGRFTPGSFTNYITRSFKEPRLIIVTDPRSDAQAIKEASYVNIPVIALTDLDSPSEYVDVAIPCNNRGKHSIGLIWYLLAREVLRLRGALVDRTQPWSVMPDLYFYR 205          
BLAST of CF834177 vs. ExPASy Swiss-Prot
Match: RSSA_LEIIN (40S ribosomal protein SA OS=Leishmania infantum GN=LinJ36.5570 PE=3 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.052e-58
Identity = 109/207 (52.66%), Postives = 145/207 (70.05%), Query Frame = 1
Query:   67 TGTATAPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 687
            T   +  + L  KE+D Q +LA   H+GT+N    M++Y++ R  +G +II+L   WEKL +AARVI A+ENP D+ V S+R YG RA+ KF+++       GR  PGTFTNQ+Q  F +PR+L++TDPRTDHQ I+EA+L NIP IA CDTD+P+ YVDI IP NN+G  SIG ++WLLAR VL++RGTI     W+  VDLFFYR
Sbjct:    2 TAVESGSKVLRMKESDAQKLLAMRCHIGTRNQSSAMKKYIYGRTAEGSHIIDLHMMWEKLILAARVIAAVENPKDVCVCSSRLYGTRAIYKFSQHVGTSFHGGRFIPGTFTNQIQKKFVQPRVLVVTDPRTDHQAIREASLVNIPVIALCDTDAPLEYVDIAIPCNNRGIKSIGMMYWLLAREVLRLRGTIVRSVPWEEKVDLFFYR 208          
BLAST of CF834177 vs. ExPASy Swiss-Prot
Match: RSSA_ASHGO (40S ribosomal protein S0 OS=Ashbya gossypii GN=RPS0 PE=3 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.373e-58
Identity = 110/193 (56.99%), Postives = 143/193 (74.09%), Query Frame = 1
Query:  112 DIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGT-IRPGHKWDVMVDLFFYR 687
            D Q++LAA VHLG+KN     E Y++K R DG+ II++GKTWEK+ +AAR+I AI N  D++  S+R YGQRAVLKF+ +T A AIAGR TPG+FTN +  SF EPRL+I+TDPR+D Q IKEA+  NIP IA  D +SP  YVD+ IP NN+GKHSIG +++LLAR VL++RG  +     W +M DL+FYR
Sbjct:   13 DAQLLLAANVHLGSKNVQVHQEPYLYKTRPDGVNIIHIGKTWEKIVLAARIIAAIPNAEDVVAISSRTYGQRAVLKFSAHTGATAIAGRFTPGSFTNYITRSFKEPRLVIVTDPRSDAQAIKEASYVNIPVIALTDLESPSEYVDVAIPCNNRGKHSIGLIWYLLAREVLRLRGALVDRTQPWSIMPDLYFYR 205          
BLAST of CF834177 vs. ExPASy Swiss-Prot
Match: RSSA_CAEBR (40S ribosomal protein SA OS=Caenorhabditis briggsae GN=rps-0 PE=3 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 1.794e-58
Identity = 108/199 (54.27%), Postives = 148/199 (74.37%), Query Frame = 1
Query:  106 EADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI--RPGHKWD---VMVDLFFYR 687
            E D+  +LA + HLG+ N +FQM++YV+KRR DG  IIN+ KTWEKL +AAR I A+ENP D++V SARPY QRA+LKFA +T A AI GR +PG  TNQ+Q +F EPRLL+++DPR DHQ + EA+   +P I+F +T+SP++ +DIG+P NNKG+ SIG ++W+LAR +L +RG I  + G   D   +M DL+FYR
Sbjct:   12 EEDVMKLLATQAHLGSTNLNFQMQQYVYKRRFDGPNIINVKKTWEKLLLAARAIAAVENPADVVVVSARPYAQRALLKFAAHTGATAIFGRFSPGCLTNQIQKTFKEPRLLVISDPRIDHQAVTEASYVGVPVISFVNTESPLKLIDIGVPCNNKGERSIGLMWWMLAREILILRGKISRQTGFVLDGKEIMPDLYFYR 210          
BLAST of CF834177 vs. ExPASy Swiss-Prot
Match: RSSA2_VANPO (40S ribosomal protein S0-B OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=RPS0B PE=3 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 2.343e-58
Identity = 110/193 (56.99%), Postives = 139/193 (72.02%), Query Frame = 1
Query:  112 DIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGT-IRPGHKWDVMVDLFFYR 687
            D Q++LAA  HLG +N     E YVF  R DG+ +IN+GKTWEK+ +AAR+I AI NP D+   S+R YGQRAVLKF+ +T A  IAGR TPG+FTN +  SF EPRL+I+TDPR+D Q IKEA+  NIP IA  D DSP  YVD+ IP NN+GKHSIG +++LLAR VL++RG  +     W +M DL+FYR
Sbjct:   13 DAQLLLAANTHLGARNVQVHQEPYVFNTRPDGVNVINVGKTWEKIVLAARIIAAIPNPEDVCAISSRTYGQRAVLKFSAHTGATPIAGRFTPGSFTNYITRSFKEPRLIIVTDPRSDFQAIKEASYVNIPVIALTDLDSPSEYVDVAIPCNNRGKHSIGLVWYLLAREVLRLRGALVDRTQPWAIMPDLYFYR 205          
BLAST of CF834177 vs. ExPASy Swiss-Prot
Match: RSSA1_VANPO (40S ribosomal protein S0-A OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=RPS0A PE=3 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 2.343e-58
Identity = 110/193 (56.99%), Postives = 139/193 (72.02%), Query Frame = 1
Query:  112 DIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGT-IRPGHKWDVMVDLFFYR 687
            D Q++LAA  HLG +N     E YVF  R DG+ +IN+GKTWEK+ +AAR+I AI NP D+   S+R YGQRAVLKF+ +T A  IAGR TPG+FTN +  SF EPRL+I+TDPR+D Q IKEA+  NIP IA  D DSP  YVD+ IP NN+GKHSIG +++LLAR VL++RG  +     W +M DL+FYR
Sbjct:   13 DAQLLLAANTHLGARNVQVHQEPYVFNTRPDGVNVINVGKTWEKIVLAARIIAAIPNPEDVCAISSRTYGQRAVLKFSAHTGATPIAGRFTPGSFTNYITRSFKEPRLIIVTDPRSDFQAIKEASYVNIPVIALTDLDSPSEYVDVAIPCNNRGKHSIGLVWYLLAREVLRLRGALVDRTQPWAIMPDLYFYR 205          
BLAST of CF834177 vs. ExPASy Swiss-Prot
Match: RSSA_CAEEL (40S ribosomal protein SA OS=Caenorhabditis elegans GN=rps-0 PE=1 SV=3)

HSP 1 Score: 224.942 bits (572), Expect = 3.060e-58
Identity = 106/199 (53.27%), Postives = 147/199 (73.87%), Query Frame = 1
Query:  106 EADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKW-----DVMVDLFFYR 687
            E D+  +LA + HLG+ N +FQM++YV+KRR DG  IIN+ KTWEKL +AAR I A+ENP D++V SARPY QRA+LKFA +T A AI GR +PG  TNQ+Q +F EPRLL+++DPR DHQ + EA+   +P I+F +T+SP++ +DIG+P NNKG+ SIG ++W+LAR +L +RG I     +     ++M DL+FYR
Sbjct:   12 EEDVMKLLATQAHLGSTNLNFQMQQYVYKRRFDGPNIINVKKTWEKLLLAARAIAAVENPADVVVVSARPYAQRALLKFAAHTGATAIFGRFSPGCLTNQIQKTFKEPRLLVISDPRIDHQAVTEASYVGVPVISFVNTESPLKLIDIGVPCNNKGERSIGLMWWMLAREILILRGKISRQTGFVLEGKEIMPDLYFYR 210          
BLAST of CF834177 vs. ExPASy Swiss-Prot
Match: RSSA_LEIMA (40S ribosomal protein SA OS=Leishmania major GN=LmjF36.5010 PE=3 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 6.816e-58
Identity = 107/198 (54.04%), Postives = 142/198 (71.72%), Query Frame = 1
Query:   94 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 687
            L  KE+D Q +LA   H+GT+N    M++Y++ R  +G +II++   WEKL +AARVI A+ENP D+ V S+R YG RA+ KF+++       GR  PGTFTNQ+Q  F +PR+L++TDPRTDHQ I+EA+L NIP IA CDTD+P+ YVDI IP NN+G  SIG ++WLLAR VL++RGTI     W+  VDLFFYR
Sbjct:   11 LRMKESDAQKLLAMRCHIGTRNQSSAMKKYIYGRTAEGSHIIDVHMMWEKLILAARVIAAVENPKDVCVCSSRLYGTRAIYKFSQHVGTSFHGGRFIPGTFTNQIQKKFVQPRVLVVTDPRTDHQAIREASLVNIPVIALCDTDAPLEYVDIAIPCNNRGIKSIGMMYWLLAREVLRLRGTIVRSVPWEEKVDLFFYR 208          
BLAST of CF834177 vs. ExPASy Swiss-Prot
Match: RSSA_LEIBR (40S ribosomal protein SA OS=Leishmania braziliensis GN=LbrM35_V2.5370 PE=3 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 8.903e-58
Identity = 107/207 (51.69%), Postives = 145/207 (70.05%), Query Frame = 1
Query:   67 TGTATAPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 687
            T   +  + L  KE+D Q +LA   H+GT+N    M++Y++ R  +G +II++   WEKL +AARVI A+ENP D+ V S+R YG RA+ KF+++       GR  PGTFTNQ+Q  F +PR+L++TDPRTDHQ I+EA+L NIP IA CDTD+P+ +VDI IP NN+G  SIG ++WLLAR VL++RGTI     W+  VDLFFYR
Sbjct:    2 TAVESGSKVLRMKESDAQKLLAMRCHIGTRNQSSAMKKYIYGRTAEGSHIIDVHMLWEKLILAARVIAAVENPKDVCVCSSRLYGTRAIYKFSQHVGTSFHGGRFIPGTFTNQIQKKFMQPRVLVVTDPRTDHQAIREASLVNIPVIALCDTDAPLDFVDIAIPCNNRGIKSIGMMYWLLAREVLRLRGTIVRSVPWEEKVDLFFYR 208          
BLAST of CF834177 vs. ExPASy Swiss-Prot
Match: RSSA_ECHGR (40S ribosomal protein SA OS=Echinococcus granulosus PE=2 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 3.166e-55
Identity = 103/198 (52.02%), Postives = 141/198 (71.21%), Query Frame = 1
Query:   94 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 687
            L  KE DI++M+AA+VHLG+ N ++QM++YV+ R ++G +II+L KTWEKL +AAR I AIENP D+++   +P  QR  LKF  YT   ++ GR TPG FTNQ+Q+ F EPRLLI+ DP+ DHQP++E +  NIP I FC+TDSP++ VDIGIP NN  K+SI  + W+LAR V ++ G        DV++DLF  R
Sbjct:    8 LELKEDDIRLMVAAKVHLGSTNANYQMQQYVYDRNDEGNHIIHLNKTWEKLLLAARAICAIENPADVVIIGGQPTWQRGALKFGHYTGTTSVPGRFTPGAFTNQIQSGFKEPRLLIVCDPKGDHQPVREGSAVNIPVIGFCNTDSPLQCVDIGIPCNN-DKYSIALMLWMLAREVRRIWGLDPRSQPGDVIMDLFLMR 204          
The following BLAST results are available for this feature:
BLAST of CF834177 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 199
Match NameE-valueIdentityDescription
RSSA_ZYGRC6.165e-5957.5140S ribosomal protein S0 OS=Zygosaccharomyces roux... [more]
RSSA_LEIIN1.052e-5852.6640S ribosomal protein SA OS=Leishmania infantum GN... [more]
RSSA_ASHGO1.373e-5856.9940S ribosomal protein S0 OS=Ashbya gossypii GN=RPS... [more]
RSSA_CAEBR1.794e-5854.2740S ribosomal protein SA OS=Caenorhabditis briggsa... [more]
RSSA2_VANPO2.343e-5856.9940S ribosomal protein S0-B OS=Vanderwaltozyma poly... [more]
RSSA1_VANPO2.343e-5856.9940S ribosomal protein S0-A OS=Vanderwaltozyma poly... [more]
RSSA_CAEEL3.060e-5853.2740S ribosomal protein SA OS=Caenorhabditis elegans... [more]
RSSA_LEIMA6.816e-5854.0440S ribosomal protein SA OS=Leishmania major GN=Lm... [more]
RSSA_LEIBR8.903e-5851.6940S ribosomal protein SA OS=Leishmania braziliensi... [more]
RSSA_ECHGR3.166e-5552.0240S ribosomal protein SA OS=Echinococcus granulosu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_05B04_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834177 ID=CF834177; Name=CF834177; organism=Citrus sinensis; type=EST; length=687bp
CAGAAGTCTCTCTCTAAGAGGCNAGTCTCAGNTTTCTCTCGCAGGTTTTA
ACCCCTAAAGATGGCGACCGGAACAGCAACGGCCCCGAGGCAGCTCTCTC
AGAAAGAGGCTGACATTCAGATGATGTTAGCCGCCGAAGTTCATTTGGGT
ACTAAGAACTGTGACTTCCAAATGGAACGTTACGTGTTCAAGCGCCGAAA
CGATGGAATTTATATTATCAATCTTGGTAAGACTTGGGAGAAGCTACAGA
TGGCGGCCAGGGTTATCGTAGCCATTGAAAACCCTGGGGACATTATTGTC
CAATCAGCTAGACCCTATGGACAGCGAGCTGTGTTGAAGTTTGCAAAGTA
CACTCACGCCCATGCCATTGCTGGCAGGCACACTCCTGGTACATTTACCA
ATCAAATGCAAACATCATTCAATGAGCCCCGACTTCTCATTCTAACAGAT
CCACGAACAGACCATCAGCCAATTAAGGAAGCTGCCCTTGGAAACATTCC
CACCATTGCCTTTTGTGACACTGACTCACCTATGCGTTATGTTGATATTG
GCATTCCTGCCAATAACAAGGGCAAACACAGCATTGGGTGTCTCTTCTGG
CTTTTGGCTAGAATGGTTCTCCAGATGCGCGGCACTATTCGTCCTGGCCA
CAAGTGGGATGTGATGGTCGATCTGTTCTTCTACAGG
back to top