CF834177
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF834177 vs. ExPASy Swiss-Prot
Match: RS2_PICTO (30S ribosomal protein S2P OS=Picrophilus torridus GN=rps2p PE=3 SV=1) HSP 1 Score: 136.346 bits (342), Expect = 1.431e-31 Identity = 69/180 (38.33%), Postives = 111/180 (61.67%), Query Frame = 1 Query: 139 VHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLF 678 +H+GT+ M+ Y+FK RNDG+YI+++ KT L +A +++ A P I+ + R Y R V KF++ + +I GR PGT TN +++E +++++TDP D Q +KEA IP IA CD ++ +VD+ IP NNKG+ S+ ++WLLAR +L+ RG I+ ++ +D F Sbjct: 18 IHIGTQIKSKDMDPYIFKIRNDGLYILDIRKTNHALIIAGKML-ARYRPEQILAVAQRQYAFRPVSKFSEVVGSKSIIGRFIPGTLTNPALPNYSEAKIILVTDPLADTQAMKEAIKVGIPIIAMCDANNKTDFVDLIIPTNNKGRRSLAVIYWLLAREILKNRGDIKSYDEFKQTIDDF 196
BLAST of CF834177 vs. ExPASy Swiss-Prot
Match: RS2_PYRCJ (30S ribosomal protein S2P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps2p PE=3 SV=1) HSP 1 Score: 135.576 bits (340), Expect = 2.441e-31 Identity = 70/179 (39.11%), Postives = 109/179 (60.89%), Query Frame = 1 Query: 115 IQMMLAAEVHLGTKNCDFQMER--YVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRP 645 ++ L+A V LGT+ + +E +++ R DG+ I ++ K E+L++AA++I P ++V + RPYG + V F K+ A+ GR PG TN +++ E LL + DPR D Q + EAA IP +A DTD+P +Y+D IP NNKG+ S+ +FW+LAR VL+ RG ++P Sbjct: 13 LEKYLSAGVRLGTRLSNKYLEERGFIYAVRPDGLRIFDIKKIDERLRIAAKLIARYP-PDRVLVHTTRPYGFKPVQMFCKFVGCKALTGRFIPGMLTNPNLSNYLEVDLLFVVDPRLDSQAVAEAAKMGIPVVALVDTDTPHQYIDFMIPCNNKGRKSLALIFWVLARQVLRERGELKP 190
BLAST of CF834177 vs. ExPASy Swiss-Prot
Match: RS2_ARCFU (30S ribosomal protein S2P OS=Archaeoglobus fulgidus GN=rps2p PE=1 SV=1) HSP 1 Score: 135.576 bits (340), Expect = 2.441e-31 Identity = 64/169 (37.87%), Postives = 106/169 (62.72%), Query Frame = 1 Query: 127 LAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRG 633 LAA VH+GT+ M++++FK R DG+Y++++ K E++++AA+ + E P I++ +AR Y + V F+K + I GR PGT TN M + + EP ++ + DP D Q + EA IP +A CD+++ VD+ IP NNKG+ ++ ++WLLAR + ++RG Sbjct: 16 LAAGVHIGTQIKTGDMKKFIFKVRQDGLYVLDIRKLDERIRVAAKFLSRYE-PSKILLVAARQYAHKPVQMFSKVVGSDYIVGRFIPGTLTNPMLSEYREPEVVFVNDPAIDKQAVSEATAVGIPVVALCDSNNSSADVDLVIPTNNKGRRALAIVYWLLAREIAKIRG 183
BLAST of CF834177 vs. ExPASy Swiss-Prot
Match: RS2_METMP (30S ribosomal protein S2P OS=Methanococcus maripaludis GN=rps2p PE=3 SV=1) HSP 1 Score: 135.191 bits (339), Expect = 3.188e-31 Identity = 67/171 (39.18%), Postives = 105/171 (61.40%), Query Frame = 1 Query: 127 LAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI 639 LA+ +H+GT+ M R++++ R DG+Y++++ KT E+L++AA+ + E P DI+ + R Y + +F K T + +AGR PGT TN F EP +L L+DPR D Q +KEA IP I CDT+ ++D IP NNKG+ S+ +++L+AR ++ RG I Sbjct: 14 LASGIHIGTQQKTEDMRRFIYRVRADGLYVLDVRKTDERLRLAAKFLSNYE-PEDIMAVTRRVYSVGPLKEFGKVTGINTVAGRFVPGTLTNPSARKFAEPEVLFLSDPRVDKQALKEAIEIGIPVIGMCDTEHLTAHIDFIIPTNNKGRKSVSLMYYLIAREYMKNRGLI 183
BLAST of CF834177 vs. ExPASy Swiss-Prot
Match: RS2_METM5 (30S ribosomal protein S2P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps2p PE=3 SV=1) HSP 1 Score: 135.191 bits (339), Expect = 3.188e-31 Identity = 67/171 (39.18%), Postives = 105/171 (61.40%), Query Frame = 1 Query: 127 LAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI 639 LA+ +H+GT+ M R++++ R DG+Y++++ KT E+L++AA+ + E P DI+ + R Y + +F K T + +AGR PGT TN F EP +L L+DPR D Q +KEA IP I CDT+ ++D IP NNKG+ S+ +++L+AR ++ RG I Sbjct: 14 LASGIHIGTQQKTEDMRRFIYRVRADGLYVLDVRKTDERLRLAAKFLSNYE-PEDIMAVTRRVYSVGPLKEFGKVTGINTVAGRFVPGTLTNPSAKKFAEPEVLFLSDPRVDKQALKEAIEIGIPVIGMCDTEHLTSHIDFIIPTNNKGRKSVSLMYYLIAREYMKNRGLI 183
BLAST of CF834177 vs. ExPASy Swiss-Prot
Match: RS2_METVS (30S ribosomal protein S2P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps2p PE=3 SV=1) HSP 1 Score: 134.806 bits (338), Expect = 4.164e-31 Identity = 66/171 (38.60%), Postives = 108/171 (63.16%), Query Frame = 1 Query: 127 LAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI 639 LA+ +H+GT+ M+R++++ R+DG+Y++++ KT E+L++AA+ + E P DI+ + R Y + KF + T + +AGR PGT TN F EP ++ L+DPR D Q +KEA IP ++ CDT+ ++D IP NNKG+ S+ +++L+AR L+ RG I Sbjct: 14 LASGIHIGTQQKTEDMKRFIYRVRSDGLYVLDVRKTDERLRLAAKFLSNYE-PQDIMAVTRRVYSVGPLKKFGETTGINTVAGRFVPGTLTNPAAKKFAEPEVMFLSDPRVDKQALKEAIEIGIPIVSMCDTEHLTAHLDFIIPTNNKGRKSVSLMYFLIAREYLKNRGII 183
BLAST of CF834177 vs. ExPASy Swiss-Prot
Match: RS2_METM7 (30S ribosomal protein S2P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps2p PE=3 SV=1) HSP 1 Score: 134.806 bits (338), Expect = 4.164e-31 Identity = 66/171 (38.60%), Postives = 105/171 (61.40%), Query Frame = 1 Query: 127 LAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI 639 LA+ +H+GT+ M R++++ R DG+Y++++ KT E+L++AA+ + E P DI+ + R Y + KF + T + +AGR PGT TN F EP +L L+DPR D Q +KEA IP + CDT+ ++D IP NNKG+ S+ +++L+AR ++ RG I Sbjct: 14 LASGIHIGTQQKTEDMRRFIYRVRADGLYVLDVRKTDERLRLAAKFLSNYE-PEDIMAVTRRVYSVGPLKKFGQVTGINTVAGRFVPGTLTNPSAKKFAEPEVLFLSDPRVDKQALKEAIEIGIPVVGMCDTEHLTAHIDFIIPTNNKGRKSVSLMYYLIAREYMKNRGLI 183
BLAST of CF834177 vs. ExPASy Swiss-Prot
Match: RS2_METM6 (30S ribosomal protein S2P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rps2p PE=3 SV=1) HSP 1 Score: 134.806 bits (338), Expect = 4.164e-31 Identity = 66/171 (38.60%), Postives = 105/171 (61.40%), Query Frame = 1 Query: 127 LAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI 639 LA+ +H+GT+ M R++++ R DG+Y++++ KT E+L++AA+ + E P DI+ + R Y + KF + T + +AGR PGT TN F EP +L L+DPR D Q +KEA IP + CDT+ ++D IP NNKG+ S+ +++L+AR ++ RG I Sbjct: 14 LASGIHIGTQQKTEDMRRFIYRVRADGLYVLDVRKTDERLRLAAKFLSNYE-PEDIMAVTRRVYSVGPLKKFGQVTGINTVAGRFVPGTLTNPSAKKFAEPEVLFLSDPRVDKQALKEAIEIGIPVVGMCDTEHLTAHIDFIIPTNNKGRKSVSLMYYLIAREYMKNRGLI 183
BLAST of CF834177 vs. ExPASy Swiss-Prot
Match: RS2_METMA (30S ribosomal protein S2P OS=Methanosarcina mazei GN=rps2p PE=3 SV=1) HSP 1 Score: 134.42 bits (337), Expect = 5.439e-31 Identity = 70/192 (36.46%), Postives = 115/192 (59.90%), Query Frame = 1 Query: 61 MATGTATAPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGT 636 +A A + ++ S I LAA VH+GT+ M R+V++ R DG+Y++++ T E++++A++++ + P I+V S+R YGQ F++ A+ GR PG+ TN F EP ++I+TDP D Q +KEA+ +P IA CDT++ VD+ IP NNKG+ ++ ++WLLAR V ++ T Sbjct: 21 VADDEAASAKEGSTSLVSIDEYLAAGVHIGTQQKTQDMMRFVYRVRTDGLYVLDIQSTDERIRVASKLLSHYD-PSRILVVSSRQYGQHPARMFSRALGTRAMLGRFIPGSLTNPQIHGFFEPDVIIVTDPAGDAQVLKEASSIGVPVIALCDTNNLTSNVDLVIPTNNKGRKALSLVYWLLAREVSRLNNT 211
BLAST of CF834177 vs. ExPASy Swiss-Prot
Match: RS2_HALSA (30S ribosomal protein S2P OS=Halobacterium salinarium GN=rps2p PE=3 SV=1) HSP 1 Score: 132.88 bits (333), Expect = 1.582e-30 Identity = 70/184 (38.04%), Postives = 111/184 (60.33%), Query Frame = 1 Query: 94 LSQKEAD----IQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRG 633 +S +EAD ++ L A VH+GT+ M+R++ + R DG+Y++++ +T ++++ AA + A +P I+V S+R YG+ KFA+ A A GR PGT TN + EP +L++TDP D Q +KEA IP IA CD+++ VD+ +P NNKG+ ++ ++WLLA L RG Sbjct: 53 MSDEEADLLIPVEDYLGAGVHIGTQQKTNDMDRFIHRVRTDGLYVLDVSRTDDRVRTAADFL-ANYDPEQILVTSSRQYGRFPAEKFAEAVGARARTGRFIPGTLTNPDYDGYIEPDVLVVTDPIGDSQAVKEAITVGIPVIAMCDSNNQTGNVDLVVPTNNKGRRALSVVYWLLANETLDRRG 235 The following BLAST results are available for this feature:
BLAST of CF834177 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 199
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Sequences
The
following sequences are available for this feature:
EST sequence >CF834177 ID=CF834177; Name=CF834177; organism=Citrus sinensis; type=EST; length=687bpback to top |