CF834177

Overview
NameCF834177
Unique NameCF834177
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length687
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834177 vs. ExPASy Swiss-Prot
Match: RS2_PICTO (30S ribosomal protein S2P OS=Picrophilus torridus GN=rps2p PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.431e-31
Identity = 69/180 (38.33%), Postives = 111/180 (61.67%), Query Frame = 1
Query:  139 VHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLF 678
            +H+GT+     M+ Y+FK RNDG+YI+++ KT   L +A +++ A   P  I+  + R Y  R V KF++   + +I GR  PGT TN    +++E +++++TDP  D Q +KEA    IP IA CD ++   +VD+ IP NNKG+ S+  ++WLLAR +L+ RG I+   ++   +D F
Sbjct:   18 IHIGTQIKSKDMDPYIFKIRNDGLYILDIRKTNHALIIAGKML-ARYRPEQILAVAQRQYAFRPVSKFSEVVGSKSIIGRFIPGTLTNPALPNYSEAKIILVTDPLADTQAMKEAIKVGIPIIAMCDANNKTDFVDLIIPTNNKGRRSLAVIYWLLAREILKNRGDIKSYDEFKQTIDDF 196          
BLAST of CF834177 vs. ExPASy Swiss-Prot
Match: RS2_PYRCJ (30S ribosomal protein S2P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps2p PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.441e-31
Identity = 70/179 (39.11%), Postives = 109/179 (60.89%), Query Frame = 1
Query:  115 IQMMLAAEVHLGTKNCDFQMER--YVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRP 645
            ++  L+A V LGT+  +  +E   +++  R DG+ I ++ K  E+L++AA++I     P  ++V + RPYG + V  F K+    A+ GR  PG  TN   +++ E  LL + DPR D Q + EAA   IP +A  DTD+P +Y+D  IP NNKG+ S+  +FW+LAR VL+ RG ++P
Sbjct:   13 LEKYLSAGVRLGTRLSNKYLEERGFIYAVRPDGLRIFDIKKIDERLRIAAKLIARYP-PDRVLVHTTRPYGFKPVQMFCKFVGCKALTGRFIPGMLTNPNLSNYLEVDLLFVVDPRLDSQAVAEAAKMGIPVVALVDTDTPHQYIDFMIPCNNKGRKSLALIFWVLARQVLRERGELKP 190          
BLAST of CF834177 vs. ExPASy Swiss-Prot
Match: RS2_ARCFU (30S ribosomal protein S2P OS=Archaeoglobus fulgidus GN=rps2p PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.441e-31
Identity = 64/169 (37.87%), Postives = 106/169 (62.72%), Query Frame = 1
Query:  127 LAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRG 633
            LAA VH+GT+     M++++FK R DG+Y++++ K  E++++AA+ +   E P  I++ +AR Y  + V  F+K   +  I GR  PGT TN M + + EP ++ + DP  D Q + EA    IP +A CD+++    VD+ IP NNKG+ ++  ++WLLAR + ++RG
Sbjct:   16 LAAGVHIGTQIKTGDMKKFIFKVRQDGLYVLDIRKLDERIRVAAKFLSRYE-PSKILLVAARQYAHKPVQMFSKVVGSDYIVGRFIPGTLTNPMLSEYREPEVVFVNDPAIDKQAVSEATAVGIPVVALCDSNNSSADVDLVIPTNNKGRRALAIVYWLLAREIAKIRG 183          
BLAST of CF834177 vs. ExPASy Swiss-Prot
Match: RS2_METMP (30S ribosomal protein S2P OS=Methanococcus maripaludis GN=rps2p PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.188e-31
Identity = 67/171 (39.18%), Postives = 105/171 (61.40%), Query Frame = 1
Query:  127 LAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI 639
            LA+ +H+GT+     M R++++ R DG+Y++++ KT E+L++AA+ +   E P DI+  + R Y    + +F K T  + +AGR  PGT TN     F EP +L L+DPR D Q +KEA    IP I  CDT+    ++D  IP NNKG+ S+  +++L+AR  ++ RG I
Sbjct:   14 LASGIHIGTQQKTEDMRRFIYRVRADGLYVLDVRKTDERLRLAAKFLSNYE-PEDIMAVTRRVYSVGPLKEFGKVTGINTVAGRFVPGTLTNPSARKFAEPEVLFLSDPRVDKQALKEAIEIGIPVIGMCDTEHLTAHIDFIIPTNNKGRKSVSLMYYLIAREYMKNRGLI 183          
BLAST of CF834177 vs. ExPASy Swiss-Prot
Match: RS2_METM5 (30S ribosomal protein S2P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps2p PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.188e-31
Identity = 67/171 (39.18%), Postives = 105/171 (61.40%), Query Frame = 1
Query:  127 LAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI 639
            LA+ +H+GT+     M R++++ R DG+Y++++ KT E+L++AA+ +   E P DI+  + R Y    + +F K T  + +AGR  PGT TN     F EP +L L+DPR D Q +KEA    IP I  CDT+    ++D  IP NNKG+ S+  +++L+AR  ++ RG I
Sbjct:   14 LASGIHIGTQQKTEDMRRFIYRVRADGLYVLDVRKTDERLRLAAKFLSNYE-PEDIMAVTRRVYSVGPLKEFGKVTGINTVAGRFVPGTLTNPSAKKFAEPEVLFLSDPRVDKQALKEAIEIGIPVIGMCDTEHLTSHIDFIIPTNNKGRKSVSLMYYLIAREYMKNRGLI 183          
BLAST of CF834177 vs. ExPASy Swiss-Prot
Match: RS2_METVS (30S ribosomal protein S2P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps2p PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.164e-31
Identity = 66/171 (38.60%), Postives = 108/171 (63.16%), Query Frame = 1
Query:  127 LAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI 639
            LA+ +H+GT+     M+R++++ R+DG+Y++++ KT E+L++AA+ +   E P DI+  + R Y    + KF + T  + +AGR  PGT TN     F EP ++ L+DPR D Q +KEA    IP ++ CDT+    ++D  IP NNKG+ S+  +++L+AR  L+ RG I
Sbjct:   14 LASGIHIGTQQKTEDMKRFIYRVRSDGLYVLDVRKTDERLRLAAKFLSNYE-PQDIMAVTRRVYSVGPLKKFGETTGINTVAGRFVPGTLTNPAAKKFAEPEVMFLSDPRVDKQALKEAIEIGIPIVSMCDTEHLTAHLDFIIPTNNKGRKSVSLMYFLIAREYLKNRGII 183          
BLAST of CF834177 vs. ExPASy Swiss-Prot
Match: RS2_METM7 (30S ribosomal protein S2P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps2p PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.164e-31
Identity = 66/171 (38.60%), Postives = 105/171 (61.40%), Query Frame = 1
Query:  127 LAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI 639
            LA+ +H+GT+     M R++++ R DG+Y++++ KT E+L++AA+ +   E P DI+  + R Y    + KF + T  + +AGR  PGT TN     F EP +L L+DPR D Q +KEA    IP +  CDT+    ++D  IP NNKG+ S+  +++L+AR  ++ RG I
Sbjct:   14 LASGIHIGTQQKTEDMRRFIYRVRADGLYVLDVRKTDERLRLAAKFLSNYE-PEDIMAVTRRVYSVGPLKKFGQVTGINTVAGRFVPGTLTNPSAKKFAEPEVLFLSDPRVDKQALKEAIEIGIPVVGMCDTEHLTAHIDFIIPTNNKGRKSVSLMYYLIAREYMKNRGLI 183          
BLAST of CF834177 vs. ExPASy Swiss-Prot
Match: RS2_METM6 (30S ribosomal protein S2P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rps2p PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.164e-31
Identity = 66/171 (38.60%), Postives = 105/171 (61.40%), Query Frame = 1
Query:  127 LAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI 639
            LA+ +H+GT+     M R++++ R DG+Y++++ KT E+L++AA+ +   E P DI+  + R Y    + KF + T  + +AGR  PGT TN     F EP +L L+DPR D Q +KEA    IP +  CDT+    ++D  IP NNKG+ S+  +++L+AR  ++ RG I
Sbjct:   14 LASGIHIGTQQKTEDMRRFIYRVRADGLYVLDVRKTDERLRLAAKFLSNYE-PEDIMAVTRRVYSVGPLKKFGQVTGINTVAGRFVPGTLTNPSAKKFAEPEVLFLSDPRVDKQALKEAIEIGIPVVGMCDTEHLTAHIDFIIPTNNKGRKSVSLMYYLIAREYMKNRGLI 183          
BLAST of CF834177 vs. ExPASy Swiss-Prot
Match: RS2_METMA (30S ribosomal protein S2P OS=Methanosarcina mazei GN=rps2p PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.439e-31
Identity = 70/192 (36.46%), Postives = 115/192 (59.90%), Query Frame = 1
Query:   61 MATGTATAPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGT 636
            +A   A + ++ S     I   LAA VH+GT+     M R+V++ R DG+Y++++  T E++++A++++   + P  I+V S+R YGQ     F++     A+ GR  PG+ TN     F EP ++I+TDP  D Q +KEA+   +P IA CDT++    VD+ IP NNKG+ ++  ++WLLAR V ++  T
Sbjct:   21 VADDEAASAKEGSTSLVSIDEYLAAGVHIGTQQKTQDMMRFVYRVRTDGLYVLDIQSTDERIRVASKLLSHYD-PSRILVVSSRQYGQHPARMFSRALGTRAMLGRFIPGSLTNPQIHGFFEPDVIIVTDPAGDAQVLKEASSIGVPVIALCDTNNLTSNVDLVIPTNNKGRKALSLVYWLLAREVSRLNNT 211          
BLAST of CF834177 vs. ExPASy Swiss-Prot
Match: RS2_HALSA (30S ribosomal protein S2P OS=Halobacterium salinarium GN=rps2p PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.582e-30
Identity = 70/184 (38.04%), Postives = 111/184 (60.33%), Query Frame = 1
Query:   94 LSQKEAD----IQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRG 633
            +S +EAD    ++  L A VH+GT+     M+R++ + R DG+Y++++ +T ++++ AA  + A  +P  I+V S+R YG+    KFA+   A A  GR  PGT TN     + EP +L++TDP  D Q +KEA    IP IA CD+++    VD+ +P NNKG+ ++  ++WLLA   L  RG
Sbjct:   53 MSDEEADLLIPVEDYLGAGVHIGTQQKTNDMDRFIHRVRTDGLYVLDVSRTDDRVRTAADFL-ANYDPEQILVTSSRQYGRFPAEKFAEAVGARARTGRFIPGTLTNPDYDGYIEPDVLVVTDPIGDSQAVKEAITVGIPVIAMCDSNNQTGNVDLVVPTNNKGRRALSVVYWLLANETLDRRG 235          
The following BLAST results are available for this feature:
BLAST of CF834177 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 199
Match NameE-valueIdentityDescription
RS2_PICTO1.431e-3138.3330S ribosomal protein S2P OS=Picrophilus torridus ... [more]
RS2_PYRCJ2.441e-3139.1130S ribosomal protein S2P OS=Pyrobaculum calidifon... [more]
RS2_ARCFU2.441e-3137.8730S ribosomal protein S2P OS=Archaeoglobus fulgidu... [more]
RS2_METMP3.188e-3139.1830S ribosomal protein S2P OS=Methanococcus maripal... [more]
RS2_METM53.188e-3139.1830S ribosomal protein S2P OS=Methanococcus maripal... [more]
RS2_METVS4.164e-3138.6030S ribosomal protein S2P OS=Methanococcus vanniel... [more]
RS2_METM74.164e-3138.6030S ribosomal protein S2P OS=Methanococcus maripal... [more]
RS2_METM64.164e-3138.6030S ribosomal protein S2P OS=Methanococcus maripal... [more]
RS2_METMA5.439e-3136.4630S ribosomal protein S2P OS=Methanosarcina mazei ... [more]
RS2_HALSA1.582e-3038.0430S ribosomal protein S2P OS=Halobacterium salinar... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05B04_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834177 ID=CF834177; Name=CF834177; organism=Citrus sinensis; type=EST; length=687bp
CAGAAGTCTCTCTCTAAGAGGCNAGTCTCAGNTTTCTCTCGCAGGTTTTA
ACCCCTAAAGATGGCGACCGGAACAGCAACGGCCCCGAGGCAGCTCTCTC
AGAAAGAGGCTGACATTCAGATGATGTTAGCCGCCGAAGTTCATTTGGGT
ACTAAGAACTGTGACTTCCAAATGGAACGTTACGTGTTCAAGCGCCGAAA
CGATGGAATTTATATTATCAATCTTGGTAAGACTTGGGAGAAGCTACAGA
TGGCGGCCAGGGTTATCGTAGCCATTGAAAACCCTGGGGACATTATTGTC
CAATCAGCTAGACCCTATGGACAGCGAGCTGTGTTGAAGTTTGCAAAGTA
CACTCACGCCCATGCCATTGCTGGCAGGCACACTCCTGGTACATTTACCA
ATCAAATGCAAACATCATTCAATGAGCCCCGACTTCTCATTCTAACAGAT
CCACGAACAGACCATCAGCCAATTAAGGAAGCTGCCCTTGGAAACATTCC
CACCATTGCCTTTTGTGACACTGACTCACCTATGCGTTATGTTGATATTG
GCATTCCTGCCAATAACAAGGGCAAACACAGCATTGGGTGTCTCTTCTGG
CTTTTGGCTAGAATGGTTCTCCAGATGCGCGGCACTATTCGTCCTGGCCA
CAAGTGGGATGTGATGGTCGATCTGTTCTTCTACAGG
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