CF834177
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF834177 vs. ExPASy Swiss-Prot
Match: RS2_HALS3 (30S ribosomal protein S2P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rps2p PE=3 SV=1) HSP 1 Score: 132.88 bits (333), Expect = 1.582e-30 Identity = 70/184 (38.04%), Postives = 111/184 (60.33%), Query Frame = 1 Query: 94 LSQKEAD----IQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRG 633 +S +EAD ++ L A VH+GT+ M+R++ + R DG+Y++++ +T ++++ AA + A +P I+V S+R YG+ KFA+ A A GR PGT TN + EP +L++TDP D Q +KEA IP IA CD+++ VD+ +P NNKG+ ++ ++WLLA L RG Sbjct: 53 MSDEEADLLIPVEDYLGAGVHIGTQQKTNDMDRFIHRVRTDGLYVLDVSRTDDRVRTAADFL-ANYDPEQILVTSSRQYGRFPAEKFAEAVGARARTGRFIPGTLTNPDYDGYIEPDVLVVTDPIGDSQAVKEAITVGIPVIAMCDSNNQTGNVDLVVPTNNKGRRALSVVYWLLANETLDRRG 235
BLAST of CF834177 vs. ExPASy Swiss-Prot
Match: RS2_METBU (30S ribosomal protein S2P OS=Methanococcoides burtonii (strain DSM 6242) GN=rps2p PE=3 SV=1) HSP 1 Score: 132.494 bits (332), Expect = 2.067e-30 Identity = 72/189 (38.10%), Postives = 110/189 (58.20%), Query Frame = 1 Query: 64 ATGTATAPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMR 630 A +A A S I LAA VH+GT+ M ++V++ R DG+Y++++ T E+++ A + ++ +P I+V SAR YGQ F+K A + GR PG+ TN +Q F EP ++I+TDP D Q I+EA IP +A CDT++ VD+ IP NNKG+ ++ ++WLLAR + R Sbjct: 12 AETSAAAENTESTSLVPIDEYLAAGVHIGTQQKTQNMMKFVYRVRTDGLYVLDIQSTDERIRSIAHFL-SMYDPSRILVVSARQYGQYPATMFSKSVGAVSKVGRFIPGSLTNPVQEGFFEPDVVIVTDPAGDAQVIREAVNVGIPVVALCDTNNMTSNVDLVIPTNNKGRKALSLVYWLLAREIANER 199
BLAST of CF834177 vs. ExPASy Swiss-Prot
Match: RS2_METB6 (30S ribosomal protein S2P OS=Methanoregula boonei (strain 6A8) GN=rps2p PE=3 SV=1) HSP 1 Score: 132.494 bits (332), Expect = 2.067e-30 Identity = 64/181 (35.36%), Postives = 113/181 (62.43%), Query Frame = 1 Query: 91 QLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRG 633 +L + ++ LAA VH+GT+ M++++++ R DG+YI+++ +T +++ A+ + E P +I+V ++R YGQ KFA A + GR PG TN + + EP+++++TDP D Q I EA IP +A CDT++ ++VD+ IP NNKG+ ++ +++LL R +L++RG Sbjct: 10 ELKEPLIPVEEYLAAGVHIGTQQKSEDMKKFIYRVRGDGLYILDIRETDARIKTVAKFLTQYEAP-EILVVTSRQYGQYPAKKFADTIGAMSATGRFIPGLLTNPVLDGYIEPKVIVVTDPIGDAQVINEAVQCGIPVVALCDTNNMTKFVDLVIPTNNKGRKALSMIYFLLTREMLRIRG 189
BLAST of CF834177 vs. ExPASy Swiss-Prot
Match: RS2_METMJ (30S ribosomal protein S2P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rps2p PE=3 SV=1) HSP 1 Score: 132.109 bits (331), Expect = 2.699e-30 Identity = 68/184 (36.96%), Postives = 111/184 (60.33%), Query Frame = 1 Query: 91 QLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFN---EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRG 633 +L + ++ LAA VH+GT+ M +++++ R DG+YI+++ T E+++ AA+ + E P I+V ++R YGQ KFA A+ GR PG TNQ N EP ++++TDP D Q I EA IP +A CDT++ +YVD+ IP NNKG+ ++ +++LL + +L++RG Sbjct: 9 ELKEPLLPVEEYLAAGVHIGTQQKSKDMMKFIYRVRGDGLYILDIQATDERIKTAAKFLSQYE-PSKILVVTSRQYGQYPAKKFADAIGGMAVVGRFIPGMLTNQRLHGLNKYIEPDVVVVTDPIGDSQTIAEAVQVGIPIVALCDTNNMTKYVDVVIPTNNKGRKALSVIYYLLTKELLRLRG 191
BLAST of CF834177 vs. ExPASy Swiss-Prot
Match: RS2_METHJ (30S ribosomal protein S2P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps2p PE=3 SV=1) HSP 1 Score: 132.109 bits (331), Expect = 2.699e-30 Identity = 63/181 (34.81%), Postives = 115/181 (63.54%), Query Frame = 1 Query: 91 QLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRG 633 +L++ ++ LAA VH+GT+ M+ ++++ R DG+YI+++ +T E++++AA+ + + P I+V ++R YGQ +FA A I GR+ PGT TN + + EP ++++TDP +D Q I+EA +IP +A CDT++ VD+ +P NNKG+ ++ +++LL + L+ +G Sbjct: 9 ELNEPLVSVEEYLAAGVHIGTQQKSSDMKNFIYRVRGDGLYILDIRETDERIKLAAKFLSQYD-PAKILVVTSRQYGQYPARRFADSIGATPIIGRYIPGTLTNPLLPRYAEPDVVVVTDPVSDLQVIREAIQVSIPVVALCDTNNMTSLVDVVVPTNNKGRKALSMIYFLLTKEFLRHKG 188
BLAST of CF834177 vs. ExPASy Swiss-Prot
Match: RS2_METBF (30S ribosomal protein S2P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps2p PE=3 SV=2) HSP 1 Score: 131.724 bits (330), Expect = 3.525e-30 Identity = 68/189 (35.98%), Postives = 112/189 (59.26%), Query Frame = 1 Query: 70 GTATAPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGT 636 G + ++ S I LAA VH+GT+ M R+V++ R DG+Y++++ T E++++AA+++ + P I+V S+R YGQ F++ ++ GR PG TN F EP ++I+TDP D Q +KEA+ +P +A CDT++ VD+ IP NNKG+ ++ ++WLLAR V ++ T Sbjct: 25 GEGPSVKEGSTSLVSIDEYLAAGVHIGTQQKTQDMMRFVYRVRTDGLYVLDIQSTDERIRVAAKLLSHYD-PSRILVVSSRQYGQHPARMFSRALSTKSMLGRFIPGLLTNPQIHGFFEPDIVIVTDPAGDAQVLKEASSIGVPIVALCDTNNLTSNVDLVIPTNNKGRKALSLVYWLLAREVSRLNST 212
BLAST of CF834177 vs. ExPASy Swiss-Prot
Match: RS2_HALWD (30S ribosomal protein S2P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps2p PE=3 SV=1) HSP 1 Score: 131.724 bits (330), Expect = 3.525e-30 Identity = 68/184 (36.96%), Postives = 109/184 (59.24%), Query Frame = 1 Query: 94 LSQKEAD----IQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRG 633 + +EAD ++ L+A VH+GT+ MER++ + R+DG+Y++++ +T +++ AA + A NP ++V S+R YG+ KFA A A GR PGT TN + EP ++++TDP D Q +KEA IP IA CD+++ D+ +P NNKG+ ++ ++WLLA L RG Sbjct: 83 MPDEEADLLIPVEDYLSAGVHIGTQQKTSDMERFIHRVRDDGLYVLDVSQTDSRIRTAANFL-ANYNPDQMLVTSSRQYGRFPAKKFADAVGARARTGRFIPGTLTNPDYAGYIEPDVVVVTDPIGDAQAVKEAITVGIPVIAMCDSNNQTSNTDLVVPTNNKGRRALSVVYWLLANETLDRRG 265
BLAST of CF834177 vs. ExPASy Swiss-Prot
Match: RS2_METAC (30S ribosomal protein S2P OS=Methanosarcina acetivorans GN=rps2p PE=3 SV=2) HSP 1 Score: 131.339 bits (329), Expect = 4.604e-30 Identity = 66/174 (37.93%), Postives = 108/174 (62.07%), Query Frame = 1 Query: 115 IQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGT 636 I LAA VH+GT+ M R+V++ R DG+Y++++ T E++++A++++ + P I+V S+R YGQ F++ A+ GR PG+ TN F EP ++I+TDP D Q +KEA+ +P +A CDT++ VD+ IP NNKG+ ++ ++WLLAR V ++ T Sbjct: 40 IDEYLAAGVHIGTQQKTQDMMRFVYRVRTDGLYVLDIQSTDERIRVASKLLSHYD-PARILVVSSRQYGQHPARMFSRALGTRAMLGRFIPGSLTNPQIHGFFEPDVIIVTDPAGDAQVLKEASSIGVPVVALCDTNNLTSNVDLVIPTNNKGRKALSLVYWLLAREVSRLNDT 212
BLAST of CF834177 vs. ExPASy Swiss-Prot
Match: RS2_UNCMA (30S ribosomal protein S2P OS=Uncultured methanogenic archaeon RC-I GN=rps2p PE=3 SV=1) HSP 1 Score: 129.798 bits (325), Expect = 1.340e-29 Identity = 63/168 (37.50%), Postives = 105/168 (62.50%), Query Frame = 1 Query: 127 LAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMR 630 LAA VH+GT+ M++++++ R+DG+Y++++ T E+++ AA+ + + P +++V AR YGQ FA+ A I GR PGT TN + F EP ++++TDP D Q + EA +P +A CDT++ +D+ IP NNKG+ ++ ++WLLAR V + R Sbjct: 25 LAAGVHIGTQQKTEDMKKFIYRVRSDGLYVLDVQSTDERIRAAAKFLSRYD-PANVLVVCARQYGQHPAEMFARAIGARHIVGRFIPGTLTNPVYMFFAEPDVVVVTDPIGDAQAVTEAISIGVPVVAMCDTNNMTSNIDLVIPTNNKGRKALALVYWLLAREVSRER 191
BLAST of CF834177 vs. ExPASy Swiss-Prot
Match: RS2_META3 (30S ribosomal protein S2P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps2p PE=3 SV=1) HSP 1 Score: 129.798 bits (325), Expect = 1.340e-29 Identity = 65/171 (38.01%), Postives = 103/171 (60.23%), Query Frame = 1 Query: 127 LAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI 639 LA+ +H+GT+ M+R++++ R DG+Y++++ KT E++ +AA+ + E P +I+ S R Y + KF + T AGR PGT TN F EP +L L+DPR D Q +KEA IP + CDT+ ++D IP NNKG+ S+ +++L+AR ++ RG I Sbjct: 14 LASGIHIGTQQKTEDMKRFIYRVRADGLYVLDVRKTDERIGLAAKFLSKYE-PEEILAVSRRIYSVGPLKKFGQTTGITTAAGRFVPGTLTNPSSRKFLEPEVLFLSDPRIDRQALKEAIEIGIPIVGMCDTEHLTSFIDFIIPTNNKGRKSVSLVYYLIAREYMKNRGLI 183 The following BLAST results are available for this feature:
BLAST of CF834177 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 199
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Sequences
The
following sequences are available for this feature:
EST sequence >CF834177 ID=CF834177; Name=CF834177; organism=Citrus sinensis; type=EST; length=687bpback to top |