CF834249

Overview
NameCF834249
Unique NameCF834249
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length851
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834249 vs. ExPASy Swiss-Prot
Match: RS11_NATTJ (30S ribosomal protein S11 OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.887e-11
Identity = 47/111 (42.34%), Postives = 57/111 (51.35%), Query Frame = -2
Query:  227 NNTFVTVTDSKGNKKIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 559
            NNT V +TDS GN    +SSG     KG  K + YAA+  AE   + A   GLK V VRVKG      +  AI S +           I  I+D T  PHNGCR PK+RR+
Sbjct:   30 NNTLVNITDSDGNTMAWSSSGACG-FKGSRKGTPYAAQIAAETAAKTAMEDGLKGVEVRVKG--PGSGREAAIRSLQAAGLE------INAIKDITPIPHNGCRPPKRRRV 131          
BLAST of CF834249 vs. ExPASy Swiss-Prot
Match: RS11_MAGSA (30S ribosomal protein S11 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.887e-11
Identity = 44/122 (36.07%), Postives = 62/122 (50.82%), Query Frame = -2
Query:  227 SSEFVHIKLMRNNTFVTVTDSKGNKKIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 592
            +S   H+    NNT +T+TD++GN  I  SS  +   KG  K + YAA+  AE  GR A   G++++ V VKG    ++     +    GF        I  I D T  PHNGCR  K+RR+
Sbjct:   19 TSGVAHVNATFNNTMITITDAQGNT-ISWSSAGMQGFKGSRKSTPYAAQVAAEDAGRKASEHGMRTLEVEVKGPGAGRESALRALQ-AVGF-------QITSIRDVTPIPHNGCRPRKRRRV 131          
BLAST of CF834249 vs. ExPASy Swiss-Prot
Match: RS11_LISW6 (30S ribosomal protein S11 OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.887e-11
Identity = 46/126 (36.51%), Postives = 66/126 (52.38%), Query Frame = -2
Query:  227 NVEHSSEFVHIKLMRNNTFVTVTDSKGNKKIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 604
            N+E  S   HI+   NNT V +TD+ GN    +S+G L   KG  K + +AA+  AE   + A+  GLK++ V VKG      +  AI + +           +  I+D T  PHNGCR PK+RR+
Sbjct:   15 NIE--SGIAHIRSTFNNTIVMITDTHGNALAWSSAGSLG-FKGSRKSTPFAAQMAAESAAKSAQEHGLKTLEVTVKGPG--SGREAAIRALQAAGLE------VTAIKDVTPVPHNGCRPPKRRRV 129          
BLAST of CF834249 vs. ExPASy Swiss-Prot
Match: RS11_LISMO (30S ribosomal protein S11 OS=Listeria monocytogenes GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.887e-11
Identity = 46/126 (36.51%), Postives = 66/126 (52.38%), Query Frame = -2
Query:  227 NVEHSSEFVHIKLMRNNTFVTVTDSKGNKKIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 604
            N+E  S   HI+   NNT V +TD+ GN    +S+G L   KG  K + +AA+  AE   + A+  GLK++ V VKG      +  AI + +           +  I+D T  PHNGCR PK+RR+
Sbjct:   15 NIE--SGIAHIRSTFNNTIVMITDTHGNALAWSSAGSLG-FKGSRKSTPFAAQMAAESAAKSAQEHGLKTLEVTVKGPG--SGREAAIRALQAAGLE------VTAIKDVTPVPHNGCRPPKRRRV 129          
BLAST of CF834249 vs. ExPASy Swiss-Prot
Match: RS11_LISMH (30S ribosomal protein S11 OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.887e-11
Identity = 46/126 (36.51%), Postives = 66/126 (52.38%), Query Frame = -2
Query:  227 NVEHSSEFVHIKLMRNNTFVTVTDSKGNKKIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 604
            N+E  S   HI+   NNT V +TD+ GN    +S+G L   KG  K + +AA+  AE   + A+  GLK++ V VKG      +  AI + +           +  I+D T  PHNGCR PK+RR+
Sbjct:   15 NIE--SGIAHIRSTFNNTIVMITDTHGNALAWSSAGSLG-FKGSRKSTPFAAQMAAESAAKSAQEHGLKTLEVTVKGPG--SGREAAIRALQAAGLE------VTAIKDVTPVPHNGCRPPKRRRV 129          
BLAST of CF834249 vs. ExPASy Swiss-Prot
Match: RS11_LISMF (30S ribosomal protein S11 OS=Listeria monocytogenes serotype 4b (strain F2365) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.887e-11
Identity = 46/126 (36.51%), Postives = 66/126 (52.38%), Query Frame = -2
Query:  227 NVEHSSEFVHIKLMRNNTFVTVTDSKGNKKIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 604
            N+E  S   HI+   NNT V +TD+ GN    +S+G L   KG  K + +AA+  AE   + A+  GLK++ V VKG      +  AI + +           +  I+D T  PHNGCR PK+RR+
Sbjct:   15 NIE--SGIAHIRSTFNNTIVMITDTHGNALAWSSAGSLG-FKGSRKSTPFAAQMAAESAAKSAQEHGLKTLEVTVKGPG--SGREAAIRALQAAGLE------VTAIKDVTPVPHNGCRPPKRRRV 129          
BLAST of CF834249 vs. ExPASy Swiss-Prot
Match: RS11_LISMC (30S ribosomal protein S11 OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.887e-11
Identity = 46/126 (36.51%), Postives = 66/126 (52.38%), Query Frame = -2
Query:  227 NVEHSSEFVHIKLMRNNTFVTVTDSKGNKKIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 604
            N+E  S   HI+   NNT V +TD+ GN    +S+G L   KG  K + +AA+  AE   + A+  GLK++ V VKG      +  AI + +           +  I+D T  PHNGCR PK+RR+
Sbjct:   15 NIE--SGIAHIRSTFNNTIVMITDTHGNALAWSSAGSLG-FKGSRKSTPFAAQMAAESAAKSAQEHGLKTLEVTVKGPG--SGREAAIRALQAAGLE------VTAIKDVTPVPHNGCRPPKRRRV 129          
BLAST of CF834249 vs. ExPASy Swiss-Prot
Match: RS11_LISIN (30S ribosomal protein S11 OS=Listeria innocua GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.887e-11
Identity = 46/126 (36.51%), Postives = 66/126 (52.38%), Query Frame = -2
Query:  227 NVEHSSEFVHIKLMRNNTFVTVTDSKGNKKIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 604
            N+E  S   HI+   NNT V +TD+ GN    +S+G L   KG  K + +AA+  AE   + A+  GLK++ V VKG      +  AI + +           +  I+D T  PHNGCR PK+RR+
Sbjct:   15 NIE--SGIAHIRSTFNNTIVMITDTHGNALAWSSAGSLG-FKGSRKSTPFAAQMAAESAAKSAQEHGLKTLEVTVKGPG--SGREAAIRALQAAGLE------VTAIKDVTPVPHNGCRPPKRRRV 129          
BLAST of CF834249 vs. ExPASy Swiss-Prot
Match: RS11_GEOSW (30S ribosomal protein S11 OS=Geobacillus sp. (strain WCH70) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.887e-11
Identity = 47/128 (36.72%), Postives = 66/128 (51.56%), Query Frame = -2
Query:  227 RYNVEHSSEFVHIKLMRNNTFVTVTDSKGNKKIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 610
            R N+E  +   HI+   NNT VT+TD  GN    +S+G L   KG  K + +AA+  AE   + +   G+K+V V VKG      +  AI + +           I  I+D T  PHNGCR PK+RR+
Sbjct:   13 RKNIE--TGIAHIRSTFNNTIVTITDVHGNTIAWSSAGALG-FKGSRKSTPFAAQMAAEAAAKASMEHGMKTVEVNVKGPG--AGREAAIRALQAAGLE------ITAIKDVTPIPHNGCRPPKRRRV 129          
BLAST of CF834249 vs. ExPASy Swiss-Prot
Match: RS11_AZOSE (30S ribosomal protein S11 OS=Azoarcus sp. (strain EbN1) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.887e-11
Identity = 45/117 (38.46%), Postives = 63/117 (53.85%), Query Frame = -2
Query:  227 HIKLMRNNTFVTVTDSKGNKKIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 577
            H+    NNT +T+TD +GN    A+SG     KG  K + +AA+  AE  G+ A+  G+K++ VR+KG      +  A+ +      N+     I  I D T  PHNGCR PKKRRI
Sbjct:   22 HVHASFNNTIITITDRQGNALSWATSGGAG-FKGSRKSTPFAAQVAAEAAGKAAQECGVKNLEVRIKG--PGPGRESAVRAL-----NALGMK-ISSITDITPIPHNGCRPPKKRRI 129          
The following BLAST results are available for this feature:
BLAST of CF834249 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
RS11_NATTJ8.887e-1142.3430S ribosomal protein S11 OS=Natranaerobius thermo... [more]
RS11_MAGSA8.887e-1136.0730S ribosomal protein S11 OS=Magnetospirillum magn... [more]
RS11_LISW68.887e-1136.5130S ribosomal protein S11 OS=Listeria welshimeri s... [more]
RS11_LISMO8.887e-1136.5130S ribosomal protein S11 OS=Listeria monocytogene... [more]
RS11_LISMH8.887e-1136.5130S ribosomal protein S11 OS=Listeria monocytogene... [more]
RS11_LISMF8.887e-1136.5130S ribosomal protein S11 OS=Listeria monocytogene... [more]
RS11_LISMC8.887e-1136.5130S ribosomal protein S11 OS=Listeria monocytogene... [more]
RS11_LISIN8.887e-1136.5130S ribosomal protein S11 OS=Listeria innocua GN=r... [more]
RS11_GEOSW8.887e-1136.7230S ribosomal protein S11 OS=Geobacillus sp. (stra... [more]
RS11_AZOSE8.887e-1138.4630S ribosomal protein S11 OS=Azoarcus sp. (strain ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05D03_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834249 ID=CF834249; Name=CF834249; organism=Citrus sinensis; type=EST; length=851bp
TTTTTTTTTTTTATGCAACAAAATTAGAATTCAGTACAAAGATCTATTAA
TCATTACCTACATTCGCACATCTCAGAACAAGATTATGAATTCAGATAAT
CATCTATAAACAAAGAGTAAAAAGCAAACTGGGTAATGTCAAAGCTGGCT
AGCAATTATTCAGATAATCATCAATAAAAGTTCCTTTCTATGGTGAAAAA
TATCAAAACTGGCTAGCCATTATTTAAATACGGCGTTTCTTTGGGAGTCG
GCACCCATTGTGCGGGCGACGAGTTGTGTCTTCAATATATACAATAGGAT
TCTGATCTCGAGAATTAGCAAATCCCTCTCTGAAGCTCATGATTGCTTGC
CTTTTCTTCTTAAAGTAAGTGAACCCTTTCACCCTCACTACTACAGATTT
TAAACCCATGTTCCTTGCCAGACGCCCAACATGTTCTGCAGTTGCTTCGG
CAGCATAACGAGACATTTTTGGCCCCCCTTTCAGTTCAGGCAAACATCCA
GAAGAGGCTCCAATCTTTTTATTTCCTTTAGAATCCGTCACAGTAACAAA
GGTGTTATTACGCATCAGCTTTATGTGGACAAACTCGGAACTGTGCTCAA
CATTATAGCGAGGAAATTGACCAAATTGAGAAGGTCCCGTGAATCTCTTT
TCATCTTCCTCTACTATTCCCCTCACAAAGTCCATGGGCCTGGAACGCCT
TCCTGTTTCATCATCCCCCCGGCCTGTGGAATGAATGAAATTCCTGAAAC
CTAAAGCATATGGAGCAGAAACATTTTGTTCCACACTCACTGCACATAAA
TTCATACCCAAATTGCCCAAAACTCGCGGCAAACTTCTGCCACTCTCCCC
T
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