CF834249
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF834249 vs. ExPASy Swiss-Prot
Match: RS11_NATTJ (30S ribosomal protein S11 OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=rpsK PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 8.887e-11 Identity = 47/111 (42.34%), Postives = 57/111 (51.35%), Query Frame = -2 Query: 227 NNTFVTVTDSKGNKKIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 559 NNT V +TDS GN +SSG KG K + YAA+ AE + A GLK V VRVKG + AI S + I I+D T PHNGCR PK+RR+ Sbjct: 30 NNTLVNITDSDGNTMAWSSSGACG-FKGSRKGTPYAAQIAAETAAKTAMEDGLKGVEVRVKG--PGSGREAAIRSLQAAGLE------INAIKDITPIPHNGCRPPKRRRV 131
BLAST of CF834249 vs. ExPASy Swiss-Prot
Match: RS11_MAGSA (30S ribosomal protein S11 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=rpsK PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 8.887e-11 Identity = 44/122 (36.07%), Postives = 62/122 (50.82%), Query Frame = -2 Query: 227 SSEFVHIKLMRNNTFVTVTDSKGNKKIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 592 +S H+ NNT +T+TD++GN I SS + KG K + YAA+ AE GR A G++++ V VKG ++ + GF I I D T PHNGCR K+RR+ Sbjct: 19 TSGVAHVNATFNNTMITITDAQGNT-ISWSSAGMQGFKGSRKSTPYAAQVAAEDAGRKASEHGMRTLEVEVKGPGAGRESALRALQ-AVGF-------QITSIRDVTPIPHNGCRPRKRRRV 131
BLAST of CF834249 vs. ExPASy Swiss-Prot
Match: RS11_LISW6 (30S ribosomal protein S11 OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=rpsK PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 8.887e-11 Identity = 46/126 (36.51%), Postives = 66/126 (52.38%), Query Frame = -2 Query: 227 NVEHSSEFVHIKLMRNNTFVTVTDSKGNKKIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 604 N+E S HI+ NNT V +TD+ GN +S+G L KG K + +AA+ AE + A+ GLK++ V VKG + AI + + + I+D T PHNGCR PK+RR+ Sbjct: 15 NIE--SGIAHIRSTFNNTIVMITDTHGNALAWSSAGSLG-FKGSRKSTPFAAQMAAESAAKSAQEHGLKTLEVTVKGPG--SGREAAIRALQAAGLE------VTAIKDVTPVPHNGCRPPKRRRV 129
BLAST of CF834249 vs. ExPASy Swiss-Prot
Match: RS11_LISMO (30S ribosomal protein S11 OS=Listeria monocytogenes GN=rpsK PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 8.887e-11 Identity = 46/126 (36.51%), Postives = 66/126 (52.38%), Query Frame = -2 Query: 227 NVEHSSEFVHIKLMRNNTFVTVTDSKGNKKIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 604 N+E S HI+ NNT V +TD+ GN +S+G L KG K + +AA+ AE + A+ GLK++ V VKG + AI + + + I+D T PHNGCR PK+RR+ Sbjct: 15 NIE--SGIAHIRSTFNNTIVMITDTHGNALAWSSAGSLG-FKGSRKSTPFAAQMAAESAAKSAQEHGLKTLEVTVKGPG--SGREAAIRALQAAGLE------VTAIKDVTPVPHNGCRPPKRRRV 129
BLAST of CF834249 vs. ExPASy Swiss-Prot
Match: RS11_LISMH (30S ribosomal protein S11 OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=rpsK PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 8.887e-11 Identity = 46/126 (36.51%), Postives = 66/126 (52.38%), Query Frame = -2 Query: 227 NVEHSSEFVHIKLMRNNTFVTVTDSKGNKKIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 604 N+E S HI+ NNT V +TD+ GN +S+G L KG K + +AA+ AE + A+ GLK++ V VKG + AI + + + I+D T PHNGCR PK+RR+ Sbjct: 15 NIE--SGIAHIRSTFNNTIVMITDTHGNALAWSSAGSLG-FKGSRKSTPFAAQMAAESAAKSAQEHGLKTLEVTVKGPG--SGREAAIRALQAAGLE------VTAIKDVTPVPHNGCRPPKRRRV 129
BLAST of CF834249 vs. ExPASy Swiss-Prot
Match: RS11_LISMF (30S ribosomal protein S11 OS=Listeria monocytogenes serotype 4b (strain F2365) GN=rpsK PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 8.887e-11 Identity = 46/126 (36.51%), Postives = 66/126 (52.38%), Query Frame = -2 Query: 227 NVEHSSEFVHIKLMRNNTFVTVTDSKGNKKIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 604 N+E S HI+ NNT V +TD+ GN +S+G L KG K + +AA+ AE + A+ GLK++ V VKG + AI + + + I+D T PHNGCR PK+RR+ Sbjct: 15 NIE--SGIAHIRSTFNNTIVMITDTHGNALAWSSAGSLG-FKGSRKSTPFAAQMAAESAAKSAQEHGLKTLEVTVKGPG--SGREAAIRALQAAGLE------VTAIKDVTPVPHNGCRPPKRRRV 129
BLAST of CF834249 vs. ExPASy Swiss-Prot
Match: RS11_LISMC (30S ribosomal protein S11 OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=rpsK PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 8.887e-11 Identity = 46/126 (36.51%), Postives = 66/126 (52.38%), Query Frame = -2 Query: 227 NVEHSSEFVHIKLMRNNTFVTVTDSKGNKKIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 604 N+E S HI+ NNT V +TD+ GN +S+G L KG K + +AA+ AE + A+ GLK++ V VKG + AI + + + I+D T PHNGCR PK+RR+ Sbjct: 15 NIE--SGIAHIRSTFNNTIVMITDTHGNALAWSSAGSLG-FKGSRKSTPFAAQMAAESAAKSAQEHGLKTLEVTVKGPG--SGREAAIRALQAAGLE------VTAIKDVTPVPHNGCRPPKRRRV 129
BLAST of CF834249 vs. ExPASy Swiss-Prot
Match: RS11_LISIN (30S ribosomal protein S11 OS=Listeria innocua GN=rpsK PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 8.887e-11 Identity = 46/126 (36.51%), Postives = 66/126 (52.38%), Query Frame = -2 Query: 227 NVEHSSEFVHIKLMRNNTFVTVTDSKGNKKIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 604 N+E S HI+ NNT V +TD+ GN +S+G L KG K + +AA+ AE + A+ GLK++ V VKG + AI + + + I+D T PHNGCR PK+RR+ Sbjct: 15 NIE--SGIAHIRSTFNNTIVMITDTHGNALAWSSAGSLG-FKGSRKSTPFAAQMAAESAAKSAQEHGLKTLEVTVKGPG--SGREAAIRALQAAGLE------VTAIKDVTPVPHNGCRPPKRRRV 129
BLAST of CF834249 vs. ExPASy Swiss-Prot
Match: RS11_GEOSW (30S ribosomal protein S11 OS=Geobacillus sp. (strain WCH70) GN=rpsK PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 8.887e-11 Identity = 47/128 (36.72%), Postives = 66/128 (51.56%), Query Frame = -2 Query: 227 RYNVEHSSEFVHIKLMRNNTFVTVTDSKGNKKIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 610 R N+E + HI+ NNT VT+TD GN +S+G L KG K + +AA+ AE + + G+K+V V VKG + AI + + I I+D T PHNGCR PK+RR+ Sbjct: 13 RKNIE--TGIAHIRSTFNNTIVTITDVHGNTIAWSSAGALG-FKGSRKSTPFAAQMAAEAAAKASMEHGMKTVEVNVKGPG--AGREAAIRALQAAGLE------ITAIKDVTPIPHNGCRPPKRRRV 129
BLAST of CF834249 vs. ExPASy Swiss-Prot
Match: RS11_AZOSE (30S ribosomal protein S11 OS=Azoarcus sp. (strain EbN1) GN=rpsK PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 8.887e-11 Identity = 45/117 (38.46%), Postives = 63/117 (53.85%), Query Frame = -2 Query: 227 HIKLMRNNTFVTVTDSKGNKKIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 577 H+ NNT +T+TD +GN A+SG KG K + +AA+ AE G+ A+ G+K++ VR+KG + A+ + N+ I I D T PHNGCR PKKRRI Sbjct: 22 HVHASFNNTIITITDRQGNALSWATSGGAG-FKGSRKSTPFAAQVAAEAAGKAAQECGVKNLEVRIKG--PGPGRESAVRAL-----NALGMK-ISSITDITPIPHNGCRPPKKRRI 129 The following BLAST results are available for this feature:
BLAST of CF834249 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 170
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Sequences
The
following sequences are available for this feature:
EST sequence >CF834249 ID=CF834249; Name=CF834249; organism=Citrus sinensis; type=EST; length=851bpback to top |