CF834249

Overview
NameCF834249
Unique NameCF834249
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length851
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF834249 vs. ExPASy Swiss-Prot
Match: RS11_BURM1 (30S ribosomal protein S11 OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=rpsK PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.115e-12
Identity = 46/118 (38.98%), Postives = 63/118 (53.39%), Query Frame = -2 
Query:  227 VHIKLMRNNTFVTVTDSKGNKKIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 580
            VH+    NNT +T+TD +GN    A+SG     KG  K + +AA+  AE  GR+A   G+K++ VR+KG       R++ +    G         I  I D T  PHNGCR PK+RRI
Sbjct:   25 VHVHASFNNTIITITDRQGNALAWATSGG-QGFKGSRKSTPFAAQVAAESAGRVAMEYGVKNLEVRIKG---PGPGRESAVRALHGLGIK-----ITAISDVTPIPHNGCRPPKRRRI 133
[Close]
BLAST of CF834249 vs. ExPASy Swiss-Prot
Match: RS11_BURCM (30S ribosomal protein S11 OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=rpsK PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.115e-12
Identity = 46/118 (38.98%), Postives = 63/118 (53.39%), Query Frame = -2 
Query:  227 VHIKLMRNNTFVTVTDSKGNKKIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 580
            VH+    NNT +T+TD +GN    A+SG     KG  K + +AA+  AE  GR+A   G+K++ VR+KG       R++ +    G         I  I D T  PHNGCR PK+RRI
Sbjct:   25 VHVHASFNNTIITITDRQGNALAWATSGG-QGFKGSRKSTPFAAQVAAESAGRVAMEYGVKNLEVRIKG---PGPGRESAVRALHGLGIK-----ITAISDVTPIPHNGCRPPKRRRI 133
[Close]
BLAST of CF834249 vs. ExPASy Swiss-Prot
Match: RS11_BURCJ (30S ribosomal protein S11 OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=rpsK PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.115e-12
Identity = 46/118 (38.98%), Postives = 63/118 (53.39%), Query Frame = -2 
Query:  227 VHIKLMRNNTFVTVTDSKGNKKIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 580
            VH+    NNT +T+TD +GN    A+SG     KG  K + +AA+  AE  GR+A   G+K++ VR+KG       R++ +    G         I  I D T  PHNGCR PK+RRI
Sbjct:   25 VHVHASFNNTIITITDRQGNALAWATSGG-QGFKGSRKSTPFAAQVAAESAGRVAMEYGVKNLEVRIKG---PGPGRESAVRALHGLGIK-----ITAISDVTPIPHNGCRPPKRRRI 133
[Close]
BLAST of CF834249 vs. ExPASy Swiss-Prot
Match: RS11_BURCH (30S ribosomal protein S11 OS=Burkholderia cenocepacia (strain HI2424) GN=rpsK PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.115e-12
Identity = 46/118 (38.98%), Postives = 63/118 (53.39%), Query Frame = -2 
Query:  227 VHIKLMRNNTFVTVTDSKGNKKIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 580
            VH+    NNT +T+TD +GN    A+SG     KG  K + +AA+  AE  GR+A   G+K++ VR+KG       R++ +    G         I  I D T  PHNGCR PK+RRI
Sbjct:   25 VHVHASFNNTIITITDRQGNALAWATSGG-QGFKGSRKSTPFAAQVAAESAGRVAMEYGVKNLEVRIKG---PGPGRESAVRALHGLGIK-----ITAISDVTPIPHNGCRPPKRRRI 133
[Close]
BLAST of CF834249 vs. ExPASy Swiss-Prot
Match: RS11_BURCC (30S ribosomal protein S11 OS=Burkholderia cenocepacia (strain MC0-3) GN=rpsK PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.115e-12
Identity = 46/118 (38.98%), Postives = 63/118 (53.39%), Query Frame = -2 
Query:  227 VHIKLMRNNTFVTVTDSKGNKKIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 580
            VH+    NNT +T+TD +GN    A+SG     KG  K + +AA+  AE  GR+A   G+K++ VR+KG       R++ +    G         I  I D T  PHNGCR PK+RRI
Sbjct:   25 VHVHASFNNTIITITDRQGNALAWATSGG-QGFKGSRKSTPFAAQVAAESAGRVAMEYGVKNLEVRIKG---PGPGRESAVRALHGLGIK-----ITAISDVTPIPHNGCRPPKRRRI 133
[Close]
BLAST of CF834249 vs. ExPASy Swiss-Prot
Match: RS11_BURCA (30S ribosomal protein S11 OS=Burkholderia cenocepacia (strain AU 1054) GN=rpsK PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.115e-12
Identity = 46/118 (38.98%), Postives = 63/118 (53.39%), Query Frame = -2 
Query:  227 VHIKLMRNNTFVTVTDSKGNKKIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 580
            VH+    NNT +T+TD +GN    A+SG     KG  K + +AA+  AE  GR+A   G+K++ VR+KG       R++ +    G         I  I D T  PHNGCR PK+RRI
Sbjct:   25 VHVHASFNNTIITITDRQGNALAWATSGG-QGFKGSRKSTPFAAQVAAESAGRVAMEYGVKNLEVRIKG---PGPGRESAVRALHGLGIK-----ITAISDVTPIPHNGCRPPKRRRI 133
[Close]
BLAST of CF834249 vs. ExPASy Swiss-Prot
Match: RS11_BURA4 (30S ribosomal protein S11 OS=Burkholderia ambifaria (strain MC40-6) GN=rpsK PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.115e-12
Identity = 46/118 (38.98%), Postives = 63/118 (53.39%), Query Frame = -2 
Query:  227 VHIKLMRNNTFVTVTDSKGNKKIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 580
            VH+    NNT +T+TD +GN    A+SG     KG  K + +AA+  AE  GR+A   G+K++ VR+KG       R++ +    G         I  I D T  PHNGCR PK+RRI
Sbjct:   25 VHVHASFNNTIITITDRQGNALAWATSGG-QGFKGSRKSTPFAAQVAAESAGRVAMEYGVKNLEVRIKG---PGPGRESAVRALHGLGIK-----ITAISDVTPIPHNGCRPPKRRRI 133
[Close]
BLAST of CF834249 vs. ExPASy Swiss-Prot
Match: RS11_RALSO (30S ribosomal protein S11 OS=Ralstonia solanacearum GN=rpsK PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.763e-12
Identity = 46/118 (38.98%), Postives = 65/118 (55.08%), Query Frame = -2 
Query:  227 HIKLMRNNTFVTVTDSKGNKKIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFRE-GFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 577
            H+    NNT +T+TD +GN    A+SG     KG  K + +AA+  AE  GR+A++ G+K++ VR+KG      +  A+ +    G         I  IED T  PHNGCR PK+RRI
Sbjct:   26 HVHASFNNTIITITDRQGNALSWATSGG-QGFKGSRKSTPFAAQVAAESAGRVAQDQGIKNLEVRIKG--PGPGRESAVRALNNLGI-------KIQVIEDVTPVPHNGCRPPKRRRI 133
[Close]
BLAST of CF834249 vs. ExPASy Swiss-Prot
Match: RS11_RALPJ (30S ribosomal protein S11 OS=Ralstonia pickettii (strain 12J) GN=rpsK PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.763e-12
Identity = 46/118 (38.98%), Postives = 65/118 (55.08%), Query Frame = -2 
Query:  227 HIKLMRNNTFVTVTDSKGNKKIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFRE-GFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 577
            H+    NNT +T+TD +GN    A+SG     KG  K + +AA+  AE  GR+A++ G+K++ VR+KG      +  A+ +    G         I  IED T  PHNGCR PK+RRI
Sbjct:   26 HVHASFNNTIITITDRQGNALSWATSGG-QGFKGSRKSTPFAAQVAAESAGRVAQDQGIKNLEVRIKG--PGPGRESAVRALNNLGI-------KIQLIEDVTPVPHNGCRPPKRRRI 133
[Close]
BLAST of CF834249 vs. ExPASy Swiss-Prot
Match: RS11_RALEJ (30S ribosomal protein S11 OS=Ralstonia eutropha (strain JMP134) GN=rpsK PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.763e-12
Identity = 45/118 (38.14%), Postives = 66/118 (55.93%), Query Frame = -2 
Query:  227 HIKLMRNNTFVTVTDSKGNKKIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFRE-GFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 577
            H+    NNT +T+TD +GN    A++G     KG  K + +AA+  AE+ GR+A++ G+K++ VR+KG      +  A+ +    G         I  IED T  PHNGCR PK+RRI
Sbjct:   25 HVHASFNNTIITITDRQGNALSWATAGG-QGFKGSRKSTPFAAQVAAENAGRVAQDQGIKNLEVRIKG--PGPGRESAVRALNALGI-------KIAIIEDVTPIPHNGCRPPKRRRI 132
The following BLAST results are available for this feature:
BLAST of CF834249 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
RS11_BURM12.115e-1238.9830S ribosomal protein S11 OS=Burkholderia multivor... [more]
RS11_BURCM2.115e-1238.9830S ribosomal protein S11 OS=Burkholderia ambifari... [more]
RS11_BURCJ2.115e-1238.9830S ribosomal protein S11 OS=Burkholderia cepacia ... [more]
RS11_BURCH2.115e-1238.9830S ribosomal protein S11 OS=Burkholderia cenocepa... [more]
RS11_BURCC2.115e-1238.9830S ribosomal protein S11 OS=Burkholderia cenocepa... [more]
RS11_BURCA2.115e-1238.9830S ribosomal protein S11 OS=Burkholderia cenocepa... [more]
RS11_BURA42.115e-1238.9830S ribosomal protein S11 OS=Burkholderia ambifari... [more]
RS11_RALSO2.763e-1238.9830S ribosomal protein S11 OS=Ralstonia solanacearu... [more]
RS11_RALPJ2.763e-1238.9830S ribosomal protein S11 OS=Ralstonia pickettii (... [more]
RS11_RALEJ2.763e-1238.1430S ribosomal protein S11 OS=Ralstonia eutropha (s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05D03_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834249 ID=CF834249; Name=CF834249; organism=Citrus sinensis; type=EST; length=851bp
TTTTTTTTTTTTATGCAACAAAATTAGAATTCAGTACAAAGATCTATTAA
TCATTACCTACATTCGCACATCTCAGAACAAGATTATGAATTCAGATAAT
CATCTATAAACAAAGAGTAAAAAGCAAACTGGGTAATGTCAAAGCTGGCT
AGCAATTATTCAGATAATCATCAATAAAAGTTCCTTTCTATGGTGAAAAA
TATCAAAACTGGCTAGCCATTATTTAAATACGGCGTTTCTTTGGGAGTCG
GCACCCATTGTGCGGGCGACGAGTTGTGTCTTCAATATATACAATAGGAT
TCTGATCTCGAGAATTAGCAAATCCCTCTCTGAAGCTCATGATTGCTTGC
CTTTTCTTCTTAAAGTAAGTGAACCCTTTCACCCTCACTACTACAGATTT
TAAACCCATGTTCCTTGCCAGACGCCCAACATGTTCTGCAGTTGCTTCGG
CAGCATAACGAGACATTTTTGGCCCCCCTTTCAGTTCAGGCAAACATCCA
GAAGAGGCTCCAATCTTTTTATTTCCTTTAGAATCCGTCACAGTAACAAA
GGTGTTATTACGCATCAGCTTTATGTGGACAAACTCGGAACTGTGCTCAA
CATTATAGCGAGGAAATTGACCAAATTGAGAAGGTCCCGTGAATCTCTTT
TCATCTTCCTCTACTATTCCCCTCACAAAGTCCATGGGCCTGGAACGCCT
TCCTGTTTCATCATCCCCCCGGCCTGTGGAATGAATGAAATTCCTGAAAC
CTAAAGCATATGGAGCAGAAACATTTTGTTCCACACTCACTGCACATAAA
TTCATACCCAAATTGCCCAAAACTCGCGGCAAACTTCTGCCACTCTCCCC
T
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