CF834295

Overview
NameCF834295
Unique NameCF834295
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length598
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_ANATD (S-adenosylmethionine synthetase OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=metK PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.025e-29
Identity = 67/117 (57.26%), Postives = 83/117 (70.94%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG AF GKDP KVDR+  Y  R  AK+IVASGLA +C VQVSYAIGV  PLS+ VD++GTGKI D++I +IVK   D RP  +  +L+L+R     + + AAYGHFGR+D D  WE
Sbjct:  268 HGGGAFSGKDPTKVDRSATYAARYVAKNIVASGLAKKCEVQVSYAIGVARPLSIRVDTFGTGKISDEKIAEIVKRVFDLRPAAIIRDLNLRR---PIYKQVAAYGHFGREDLDLPWE 381          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_THESQ (S-adenosylmethionine synthetase OS=Thermotoga sp. (strain RQ2) GN=metK PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.748e-29
Identity = 60/117 (51.28%), Postives = 86/117 (73.50%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG AF GKDP KVDR+  Y+ R  AK++VA+GLA + ++Q+SYAIGV +P+S+ +D+YGT K+ + ++LK++ E  DFRPG +   L+L R     + K AAYGHFGR++ +FTWE
Sbjct:  268 HGGGAFSGKDPTKVDRSAHYMARYVAKNVVAAGLADKFLIQLSYAIGVAKPVSIMIDTYGTAKVDEDKLLKVITELFDFRPGAIIKKLNLLR---PIYRKTAAYGHFGRNEEEFTWE 381          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_THEP1 (S-adenosylmethionine synthetase OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=metK PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.748e-29
Identity = 60/117 (51.28%), Postives = 86/117 (73.50%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG AF GKDP KVDR+  Y+ R  AK++VA+GLA + ++Q+SYAIGV +P+S+ +D+YGT K+ + ++LK++ E  DFRPG +   L+L R     + K AAYGHFGR++ +FTWE
Sbjct:  268 HGGGAFSGKDPTKVDRSAHYMARYVAKNVVAAGLADKFLIQLSYAIGVAKPVSIMIDTYGTAKVDEDKLLKVITELFDFRPGAIIKKLNLLR---PIYRKTAAYGHFGRNEEEFTWE 381          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_THEMA (S-adenosylmethionine synthetase OS=Thermotoga maritima GN=metK PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.748e-29
Identity = 60/117 (51.28%), Postives = 86/117 (73.50%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG AF GKDP KVDR+  Y+ R  AK++VA+GLA + ++Q+SYAIGV +P+S+ +D+YGT K+ + ++LK++ E  DFRPG +   L+L R     + K AAYGHFGR++ +FTWE
Sbjct:  268 HGGGAFSGKDPTKVDRSAHYMARYVAKNVVAAGLADKFLIQLSYAIGVAKPVSIMIDTYGTAKVDEDKLLKVITELFDFRPGAIIKKLNLLR---PIYRKTAAYGHFGRNEEEFTWE 381          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_THEEB (S-adenosylmethionine synthetase OS=Thermosynechococcus elongatus (strain BP-1) GN=metK PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.748e-29
Identity = 66/121 (54.55%), Postives = 87/121 (71.90%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPG--MMTINL-DLKRGGNGRFLKP-AAYGHFGRDDPDFTWE 591
            HGG AF GKDP KVDR+ AY+ R  AK+IVA+GLA +C +Q+SYAIGV  P+SLFVD++GTGK+  +++L+++K   D RP   + T+NL  L +   GRF +  AAYGHFGR D D  WE
Sbjct:  277 HGGGAFSGKDPTKVDRSAAYMARYIAKNIVAAGLADKCELQISYAIGVARPMSLFVDTFGTGKLSPEQLLELIKTHFDLRPAAIIQTLNLRHLPQERGGRFYQDVAAYGHFGRHDLDLPWE 397          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_RALSO (S-adenosylmethionine synthetase OS=Ralstonia solanacearum GN=metK PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.748e-29
Identity = 66/117 (56.41%), Postives = 84/117 (71.79%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG AF GKDP KVDR+ AY  R  AK++VA+GLA +C VQVSYAIGV  P+++ V + GTG IPD++I K+V+E  D RP  +   LDL R   G   K AAYGHFGR++P+F+WE
Sbjct:  260 HGGGAFSGKDPSKVDRSAAYAARYVAKNVVAAGLARQCQVQVSYAIGVARPINITVYTEGTGVIPDEQIAKLVQEHFDLRPKGIVQMLDLLRPIYG---KTAAYGHFGREEPEFSWE 373          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_CLOPS (S-adenosylmethionine synthetase OS=Clostridium perfringens (strain SM101 / Type A) GN=metK PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.748e-29
Identity = 64/119 (53.78%), Postives = 85/119 (71.43%), Query Frame = -2
Query:  241 GAHGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 597
            G HGG AF GKDP KVDR+ AY  R  AK++VA+G+A +  VQV+YAIGV +P+S+ VD++GTGKI D+EI+ I+ +  D RPG +  +LDL+R     + + AAYGHFGR D D  WE
Sbjct:  264 GRHGGGAFSGKDPTKVDRSAAYAARWVAKNLVAAGIADKLEVQVAYAIGVAKPVSIIVDTFGTGKISDEEIVNIINKVFDLRPGAIIRDLDLRR---PIYRQTAAYGHFGRTDLDLPWE 379          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_CLOP1 (S-adenosylmethionine synthetase OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=metK PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.748e-29
Identity = 64/119 (53.78%), Postives = 85/119 (71.43%), Query Frame = -2
Query:  241 GAHGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 597
            G HGG AF GKDP KVDR+ AY  R  AK++VA+G+A +  VQV+YAIGV +P+S+ VD++GTGKI D+EI+ I+ +  D RPG +  +LDL+R     + + AAYGHFGR D D  WE
Sbjct:  264 GRHGGGAFSGKDPTKVDRSAAYAARWVAKNLVAAGIADKLEVQVAYAIGVAKPVSIIVDTFGTGKISDEEIVNIINKVFDLRPGAIIRDLDLRR---PIYRQTAAYGHFGRTDLDLPWE 379          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_CLOD6 (S-adenosylmethionine synthetase OS=Clostridium difficile (strain 630) GN=metK PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.748e-29
Identity = 59/117 (50.43%), Postives = 86/117 (73.50%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG AF GKDP KVDR+ AY  R  AK+IVA+GLA +C ++++YAIG+  PLS+F+D++GTGK+ +++++++V +  D RPG +  +LDL++     + K AAYGHFGR D D  WE
Sbjct:  269 HGGGAFSGKDPTKVDRSAAYAARYVAKNIVAAGLADKCEIELAYAIGIARPLSIFIDTFGTGKVSEEKLVELVNKHFDLRPGAIIRDLDLRK---PLYKKVAAYGHFGRTDIDLPWE 382          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_RALEH (S-adenosylmethionine synthetase OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=metK PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.283e-29
Identity = 66/117 (56.41%), Postives = 84/117 (71.79%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG AF GKDP KVDR+ AY  R  AK++VASGLA +C VQVSYAIGV  P+++ V + GTGKIPD +I ++V+E  D RP  +   LDL R     + K AAYGHFGR++P+F+WE
Sbjct:  260 HGGGAFSGKDPSKVDRSAAYAARYVAKNVVASGLARQCQVQVSYAIGVARPINVTVYTEGTGKIPDAKIAELVQEHFDLRPKGIVQMLDLLR---PIYEKTAAYGHFGREEPEFSWE 373          
The following BLAST results are available for this feature:
BLAST of CF834295 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_ANATD1.025e-2957.26S-adenosylmethionine synthetase OS=Anaerocellum th... [more]
METK_THESQ1.748e-2951.28S-adenosylmethionine synthetase OS=Thermotoga sp. ... [more]
METK_THEP11.748e-2951.28S-adenosylmethionine synthetase OS=Thermotoga petr... [more]
METK_THEMA1.748e-2951.28S-adenosylmethionine synthetase OS=Thermotoga mari... [more]
METK_THEEB1.748e-2954.55S-adenosylmethionine synthetase OS=Thermosynechoco... [more]
METK_RALSO1.748e-2956.41S-adenosylmethionine synthetase OS=Ralstonia solan... [more]
METK_CLOPS1.748e-2953.78S-adenosylmethionine synthetase OS=Clostridium per... [more]
METK_CLOP11.748e-2953.78S-adenosylmethionine synthetase OS=Clostridium per... [more]
METK_CLOD61.748e-2950.43S-adenosylmethionine synthetase OS=Clostridium dif... [more]
METK_RALEH2.283e-2956.41S-adenosylmethionine synthetase OS=Ralstonia eutro... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05E14_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05E14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834295 ID=CF834295; Name=CF834295; organism=Citrus sinensis; type=EST; length=598bp
GGAACATTAAACCAAAACCAAAAAAGACCTCGGGGAAAGAAGAAAAAGAA
AGGAATTGAATGGGGAACATGTATGAGTTCCGAACACAGGAGATTTGCTT
AGTATTACAAAGCAGCAGCAAGATAATATTCAAATTATTCATCCACTACC
AATAGAAGCAAACTTGAACAGGAGGGATAGTTTGCACTTTTCAACTCAAA
TTTAAGCTTGAGGCTTTTCCCACTTGAGGGGCTTCACAACTTCCCAAGTG
AAGTCTGGGTCATCCCTGCCAAAGTGTCCATAGGCAGCAGGCTTCAAGAA
CCTGCCATTACCGCCCCTTTTGAGATCCAAATTGATGGTCATCATTCCTG
GCCTGAAATCAGAGCTTTCCTTCACAATTTTGAGGATCTCCTTGTCAGGA
ATCTTGCCGGTTCCATATGAGTCCACAAAAAGAGACAATGGCTCAGGCAC
ACCTATGGCATACGAGACTTGGACAATGCACCTGGGAGCAAGCCCGCTTG
CAACAATGCTCTTAGCAGCCTGCCTAACAATGTATGCACCAGTCCTATCC
ACCTTAGGAGGGTCTTTTCCAAAGAAAGCACAGCCACCATGGGCTCCC
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