CF834295

Overview
NameCF834295
Unique NameCF834295
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length598
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_STRCO (S-adenosylmethionine synthetase OS=Streptomyces coelicolor GN=metK PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 8.675e-29
Identity = 64/117 (54.70%), Postives = 82/117 (70.09%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG AF GKDP KVDR+ AY +R  AK++VA+GLA RC VQV+YAIG  EP+ LFV+++GT K+  ++I K + E  D RP  +   LDL R     + + AAYGHFGR+ PDFTWE
Sbjct:  275 HGGGAFSGKDPSKVDRSAAYAMRWVAKNVVAAGLAARCEVQVAYAIGKAEPVGLFVETFGTAKVDTEKIEKAIDEVFDLRPAAIIRALDLLR---PIYAQTAAYGHFGRELPDFTWE 388          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_MARMS (S-adenosylmethionine synthetase OS=Marinomonas sp. (strain MWYL1) GN=metK PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 8.675e-29
Identity = 63/117 (53.85%), Postives = 83/117 (70.94%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG AF GKDP KVDR+ AY  R  AK+IVA+GLA +C +Q+SYAIGV EP S+ ++++GTGK+ D  I ++V+E  + RP  +   LDLKR     +L  AAYGHFGR+  +FTWE
Sbjct:  260 HGGGAFSGKDPSKVDRSAAYAGRYVAKNIVAAGLADKCEIQISYAIGVAEPTSISINTFGTGKVSDAVISQLVREHFELRPAGLIKMLDLKR---PIYLPTAAYGHFGREGENFTWE 373          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_LEIIN (S-adenosylmethionine synthetase OS=Leishmania infantum GN=METK PE=2 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 8.675e-29
Identity = 68/128 (53.12%), Postives = 87/128 (67.97%), Query Frame = -2
Query:  226 GAHGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDP----DFTWEVVKPL 597
            GAHGG AF GKDP KVDR+ AY  R  AKSIVA GLA RC+VQ++YAIGV EPLS+ V++YGTGK  D ++L+IVK++   RP  +   L+L+R     +   + +GHFGR D      FTWEV K +
Sbjct:  266 GAHGGGAFSGKDPSKVDRSAAYAARWIAKSIVAGGLARRCLVQLAYAIGVAEPLSMHVETYGTGKYDDAKLLEIVKQNFKLRPYDIIQELNLRR---PIYYDTSRFGHFGRKDELGTGGFTWEVPKKM 390          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_HERAR (S-adenosylmethionine synthetase OS=Herminiimonas arsenicoxydans GN=metK PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 8.675e-29
Identity = 65/117 (55.56%), Postives = 83/117 (70.94%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG AF GKDP KVDR+ AY  R  AK+IVA+GLA R  +Q+SYAIGV +P S+ V ++GTGKI D++I ++V E  D RP  +   LDL R     + K AAYGHFGR++P+FTWE
Sbjct:  260 HGGGAFSGKDPSKVDRSAAYAGRYVAKNIVAAGLAERAQIQISYAIGVAKPTSVMVTTFGTGKISDEKIAQLVLEHFDLRPKGIVQMLDLLR---PIYQKTAAYGHFGREEPEFTWE 373          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_DESMR (S-adenosylmethionine synthetase OS=Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1) GN=metK PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 8.675e-29
Identity = 66/121 (54.55%), Postives = 81/121 (66.94%), Query Frame = -2
Query:  238 GAHGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKP-AAYGHFGRDDPDFTWEV 597
            G HGG AF GKDP KVDR+GAY+ R  AK++VASG   RC VQ++Y IGV EPLS+ V S G+  IPD+ + K V+E  D RP  ++  LDLKR       KP + YGHFGR+   FTWEV
Sbjct:  260 GNHGGGAFSGKDPSKVDRSGAYMARYVAKNMVASGACKRCEVQIAYCIGVAEPLSVLVTSMGSSDIPDEALTKAVREVFDLRPYYISKRLDLKR----PIYKPTSCYGHFGREQAGFTWEV 376          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK2_RAT (S-adenosylmethionine synthetase isoform type-2 OS=Rattus norvegicus GN=Mat2a PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 8.675e-29
Identity = 68/126 (53.97%), Postives = 86/126 (68.25%), Query Frame = -2
Query:  220 GAHGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWEVVKPLKW 597
            GAHGG AF GKD  KVDR+ AY  R  AKS+V  GL  R +VQVSYAIGV  PLS+ +  YGT +  ++E+L+IVK + D RPG++  +LDLK+     + + AAYGHFGRD   F WEV K LK+
Sbjct:  275 GAHGGGAFSGKDYTKVDRSAAYAARWVAKSLVKGGLCRRVLVQVSYAIGVSHPLSISIFHYGTSQKSERELLEIVKNNFDLRPGVIVRDLDLKK---PIYQRTAAYGHFGRD--SFPWEVPKKLKY 395          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_VARPS (S-adenosylmethionine synthetase OS=Variovorax paradoxus (strain S110) GN=metK PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.133e-28
Identity = 64/117 (54.70%), Postives = 84/117 (71.79%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG AF GKDP KVDR+ AY  R  AK+IVA+GLA +C +QV+YAIGV +P+++ V + GTG IPD +I ++V+E  D RP  +   LDL R     + K AAYGHFGR++P+FTWE
Sbjct:  266 HGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLARQCQIQVAYAIGVAQPMNITVYTEGTGVIPDAKIAELVREFFDLRPKGIIQMLDLLR---PIYQKTAAYGHFGREEPEFTWE 379          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_POLNA (S-adenosylmethionine synthetase OS=Polaromonas naphthalenivorans (strain CJ2) GN=metK PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.133e-28
Identity = 64/117 (54.70%), Postives = 84/117 (71.79%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG AF GKDP KVDR+ AY  R  AK+IVA+GLA +C +QV+YAIGV +P+++ V + GTG IPD+++  +V+E  D RP  +   LDL R     + K AAYGHFGRD+P+FTWE
Sbjct:  268 HGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLARQCQIQVAYAIGVAKPMNVTVYTEGTGVIPDEKLSALVQEHFDLRPNGIIQMLDLLR---PIYEKTAAYGHFGRDEPEFTWE 381          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_LEPCP (S-adenosylmethionine synthetase OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=metK PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.133e-28
Identity = 65/117 (55.56%), Postives = 82/117 (70.09%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG AF GKDP KVDR+ AY  R  AK+IVA+GLA +C +QV+YAIGV  P+++ V + GTG IPD EI K+V+   D RP  +   LDL R     + K AAYGHFGR++P+FTWE
Sbjct:  266 HGGGAFSGKDPTKVDRSAAYAARYVAKNIVAAGLARQCQIQVAYAIGVARPMNITVYTEGTGVIPDAEIAKLVEAHFDLRPKGIIQMLDLLR---PIYQKTAAYGHFGREEPEFTWE 379          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_DIAST (S-adenosylmethionine synthetase OS=Diaphorobacter sp. (strain TPSY) GN=metK PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.133e-28
Identity = 64/117 (54.70%), Postives = 83/117 (70.94%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG AF GKDP KVDR+ AY  R  AK+IVA+GLA +C +QV+YAIGV  P+++ V + GTG IPD +I ++V+E  D RP  +   LDL R     + K AAYGHFGR++P+FTWE
Sbjct:  266 HGGGAFSGKDPTKVDRSAAYAARYVAKNIVAAGLARQCQIQVAYAIGVARPMNITVYTEGTGVIPDDQIAQLVQEHFDLRPKGIIQMLDLLR---PIYAKTAAYGHFGREEPEFTWE 379          
The following BLAST results are available for this feature:
BLAST of CF834295 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_STRCO8.675e-2954.70S-adenosylmethionine synthetase OS=Streptomyces co... [more]
METK_MARMS8.675e-2953.85S-adenosylmethionine synthetase OS=Marinomonas sp.... [more]
METK_LEIIN8.675e-2953.13S-adenosylmethionine synthetase OS=Leishmania infa... [more]
METK_HERAR8.675e-2955.56S-adenosylmethionine synthetase OS=Herminiimonas a... [more]
METK_DESMR8.675e-2954.55S-adenosylmethionine synthetase OS=Desulfovibrio m... [more]
METK2_RAT8.675e-2953.97S-adenosylmethionine synthetase isoform type-2 OS=... [more]
METK_VARPS1.133e-2854.70S-adenosylmethionine synthetase OS=Variovorax para... [more]
METK_POLNA1.133e-2854.70S-adenosylmethionine synthetase OS=Polaromonas nap... [more]
METK_LEPCP1.133e-2855.56S-adenosylmethionine synthetase OS=Leptothrix chol... [more]
METK_DIAST1.133e-2854.70S-adenosylmethionine synthetase OS=Diaphorobacter ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05E14_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05E14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834295 ID=CF834295; Name=CF834295; organism=Citrus sinensis; type=EST; length=598bp
GGAACATTAAACCAAAACCAAAAAAGACCTCGGGGAAAGAAGAAAAAGAA
AGGAATTGAATGGGGAACATGTATGAGTTCCGAACACAGGAGATTTGCTT
AGTATTACAAAGCAGCAGCAAGATAATATTCAAATTATTCATCCACTACC
AATAGAAGCAAACTTGAACAGGAGGGATAGTTTGCACTTTTCAACTCAAA
TTTAAGCTTGAGGCTTTTCCCACTTGAGGGGCTTCACAACTTCCCAAGTG
AAGTCTGGGTCATCCCTGCCAAAGTGTCCATAGGCAGCAGGCTTCAAGAA
CCTGCCATTACCGCCCCTTTTGAGATCCAAATTGATGGTCATCATTCCTG
GCCTGAAATCAGAGCTTTCCTTCACAATTTTGAGGATCTCCTTGTCAGGA
ATCTTGCCGGTTCCATATGAGTCCACAAAAAGAGACAATGGCTCAGGCAC
ACCTATGGCATACGAGACTTGGACAATGCACCTGGGAGCAAGCCCGCTTG
CAACAATGCTCTTAGCAGCCTGCCTAACAATGTATGCACCAGTCCTATCC
ACCTTAGGAGGGTCTTTTCCAAAGAAAGCACAGCCACCATGGGCTCCC
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