CF834295

Overview
NameCF834295
Unique NameCF834295
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length598
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_BURP8 (S-adenosylmethionine synthetase OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=metK PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.133e-28
Identity = 63/117 (53.85%), Postives = 84/117 (71.79%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG AF GKDP KVDR+ AY  R  AK+IVA+GLA R ++QVSYAIGV +P S+ V+++GTG++ D  I ++V+E  D RP  +   LDL R     + K AAYGHFGR++P+F+WE
Sbjct:  261 HGGGAFSGKDPSKVDRSAAYAGRYVAKNIVAAGLASRALIQVSYAIGVAQPTSVMVNTFGTGRVSDATITRLVQEHFDLRPKGIIQMLDLLR---PVYEKTAAYGHFGREEPEFSWE 374          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_AMOPR (S-adenosylmethionine synthetase OS=Amoeba proteus GN=metK PE=2 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 1.133e-28
Identity = 62/124 (50.00%), Postives = 85/124 (68.55%), Query Frame = -2
Query:  226 GAHGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWEVVKPL 597
            GAHGG AF GKDP KVDR+ AY  R  A+++V + L  R +VQVSY IG PEPL+++V++YGTG   D E+L+I+ ++ DFRPG +   LDL      ++++ A +GHFGR  P+F WE  K L
Sbjct:  303 GAHGGGAFSGKDPSKVDRSAAYYARYVAQNLVRAKLCRRVLVQVSYVIGKPEPLNIYVNTYGTGTHSDSELLEIINKNFDFRPGFIIEELDLLNPDRIKYVETAYHGHFGR--PEFPWEQEKTL 424          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_ACISJ (S-adenosylmethionine synthetase OS=Acidovorax sp. (strain JS42) GN=metK PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.133e-28
Identity = 64/117 (54.70%), Postives = 83/117 (70.94%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG AF GKDP KVDR+ AY  R  AK+IVA+GLA +C +QV+YAIGV  P+++ V + GTG IPD +I ++V+E  D RP  +   LDL R     + K AAYGHFGR++P+FTWE
Sbjct:  266 HGGGAFSGKDPTKVDRSAAYAARYVAKNIVAAGLARQCQIQVAYAIGVARPMNITVYTEGTGVIPDDQIAQLVQEHFDLRPKGIIQMLDLLR---PIYAKTAAYGHFGREEPEFTWE 379          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_MYXXD (S-adenosylmethionine synthetase OS=Myxococcus xanthus (strain DK 1622) GN=metK PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.480e-28
Identity = 65/125 (52.00%), Postives = 87/125 (69.60%), Query Frame = -2
Query:  223 GAHGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWEVVKPLK 597
            G HGG AF GKDP KVDR+ AY+ R  AK++VA+GLA RC VQVSYAIGV EP+S+ V+++GT  +P++ I   V+++   RP  +T  L+L R     + K AAYGHFGR + +FTWE V+  K
Sbjct:  254 GRHGGGAFSGKDPSKVDRSAAYMGRHIAKTVVAAGLARRCEVQVSYAIGVAEPVSVMVETFGTATVPEERIALAVRKTFGLRPREITEYLNLLR---PIYQKTAAYGHFGRTEKEFTWERVEEKK 375          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_MYXXA (S-adenosylmethionine synthetase OS=Myxococcus xanthus GN=metK PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.480e-28
Identity = 65/125 (52.00%), Postives = 87/125 (69.60%), Query Frame = -2
Query:  223 GAHGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWEVVKPLK 597
            G HGG AF GKDP KVDR+ AY+ R  AK++VA+GLA RC VQVSYAIGV EP+S+ V+++GT  +P++ I   V+++   RP  +T  L+L R     + K AAYGHFGR + +FTWE V+  K
Sbjct:  254 GRHGGGAFSGKDPSKVDRSAAYMGRHIAKTVVAAGLARRCEVQVSYAIGVAEPVSVMVETFGTATVPEERIALAVRKTFGLRPREITEYLNLLR---PIYQKTAAYGHFGRTEKEFTWERVEEKK 375          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_CLOBM (S-adenosylmethionine synthetase OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=metK PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.480e-28
Identity = 63/119 (52.94%), Postives = 85/119 (71.43%), Query Frame = -2
Query:  241 GAHGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 597
            G HGG AF GKDP KVDR+ AY  R  AK++VA+G+A +  +Q++YAIGV +P+S+ VD++GTGKI D+EI+ IV +  D RPG +  +LDL+R     + + AAYGHFGR D D  WE
Sbjct:  264 GRHGGGAFSGKDPTKVDRSAAYAARWVAKNLVAAGVADKLEIQLAYAIGVAKPVSISVDTFGTGKITDEEIVSIVNKVFDLRPGAIIRDLDLRR---PIYKQVAAYGHFGRTDIDVPWE 379          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_ACIAC (S-adenosylmethionine synthetase OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=metK PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.480e-28
Identity = 65/117 (55.56%), Postives = 83/117 (70.94%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG AF GKDP KVDR+ AY  R  AK+IVA+GLA +C +QVSYAIGV  P+++ V + GTG IPD++I  +V+E  D RP  +   LDL R     + K AAYGHFGR++P+FTWE
Sbjct:  266 HGGGAFSGKDPTKVDRSAAYAARYVAKNIVAAGLARQCQIQVSYAIGVARPINVTVYTEGTGVIPDEKIAALVQEHFDLRPKGIIQMLDLLR---PIYEKTAAYGHFGREEPEFTWE 379          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_THEP3 (S-adenosylmethionine synthetase OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=metK PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.933e-28
Identity = 63/117 (53.85%), Postives = 83/117 (70.94%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG AF GKDP KVDR+ +Y  R  AK+IVA+GLA +C VQ++YAIGV  PL + +D++GTGKI D++I +IVK+  D RP  +  +LDL+R     + + AAYGHFGR D D  WE
Sbjct:  268 HGGGAFSGKDPTKVDRSASYAARYVAKNIVAAGLAKKCEVQLAYAIGVATPLEIGIDTFGTGKISDEKISEIVKQVFDLRPAAIIRDLDLRR---PIYRQVAAYGHFGRHDLDLPWE 381          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_NITOC (S-adenosylmethionine synthetase OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=metK PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.933e-28
Identity = 62/117 (52.99%), Postives = 84/117 (71.79%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG AF GKDP KVDR+ AY  R  AK++VA+GLA RC VQ+SYAIGV EP S+ V+++GTG+I +  ++++++   D RP  +   LDL R     + K AAYGHFGR++P+FTWE
Sbjct:  261 HGGGAFSGKDPSKVDRSAAYAGRYVAKNLVAAGLAERCEVQISYAIGVAEPTSVSVNTFGTGRIAESRLVELIQAHFDLRPVGLLQMLDLIR---PIYRKTAAYGHFGREEPEFTWE 374          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_METCA (S-adenosylmethionine synthetase OS=Methylococcus capsulatus GN=metK PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.933e-28
Identity = 63/117 (53.85%), Postives = 83/117 (70.94%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG AF GKDP KVDR+ AY+ R  AK+IVA+GLA RC +QVSYAIGV EP S+ ++++GTG+I ++ ++K+V+E  D RP  +   LDL R     +   AAYGHFGR +  FTWE
Sbjct:  259 HGGGAFSGKDPSKVDRSAAYMGRYVAKNIVAAGLAERCEIQVSYAIGVAEPTSISIETFGTGRIAEETLVKLVREHFDLRPKGLITMLDLLR---PIYRPTAAYGHFGRTEGTFTWE 372          
The following BLAST results are available for this feature:
BLAST of CF834295 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_BURP81.133e-2853.85S-adenosylmethionine synthetase OS=Burkholderia ph... [more]
METK_AMOPR1.133e-2850.00S-adenosylmethionine synthetase OS=Amoeba proteus ... [more]
METK_ACISJ1.133e-2854.70S-adenosylmethionine synthetase OS=Acidovorax sp. ... [more]
METK_MYXXD1.480e-2852.00S-adenosylmethionine synthetase OS=Myxococcus xant... [more]
METK_MYXXA1.480e-2852.00S-adenosylmethionine synthetase OS=Myxococcus xant... [more]
METK_CLOBM1.480e-2852.94S-adenosylmethionine synthetase OS=Clostridium bot... [more]
METK_ACIAC1.480e-2855.56S-adenosylmethionine synthetase OS=Acidovorax aven... [more]
METK_THEP31.933e-2853.85S-adenosylmethionine synthetase OS=Thermoanaerobac... [more]
METK_NITOC1.933e-2852.99S-adenosylmethionine synthetase OS=Nitrosococcus o... [more]
METK_METCA1.933e-2853.85S-adenosylmethionine synthetase OS=Methylococcus c... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05E14_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05E14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834295 ID=CF834295; Name=CF834295; organism=Citrus sinensis; type=EST; length=598bp
GGAACATTAAACCAAAACCAAAAAAGACCTCGGGGAAAGAAGAAAAAGAA
AGGAATTGAATGGGGAACATGTATGAGTTCCGAACACAGGAGATTTGCTT
AGTATTACAAAGCAGCAGCAAGATAATATTCAAATTATTCATCCACTACC
AATAGAAGCAAACTTGAACAGGAGGGATAGTTTGCACTTTTCAACTCAAA
TTTAAGCTTGAGGCTTTTCCCACTTGAGGGGCTTCACAACTTCCCAAGTG
AAGTCTGGGTCATCCCTGCCAAAGTGTCCATAGGCAGCAGGCTTCAAGAA
CCTGCCATTACCGCCCCTTTTGAGATCCAAATTGATGGTCATCATTCCTG
GCCTGAAATCAGAGCTTTCCTTCACAATTTTGAGGATCTCCTTGTCAGGA
ATCTTGCCGGTTCCATATGAGTCCACAAAAAGAGACAATGGCTCAGGCAC
ACCTATGGCATACGAGACTTGGACAATGCACCTGGGAGCAAGCCCGCTTG
CAACAATGCTCTTAGCAGCCTGCCTAACAATGTATGCACCAGTCCTATCC
ACCTTAGGAGGGTCTTTTCCAAAGAAAGCACAGCCACCATGGGCTCCC
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