CF834295

Overview
NameCF834295
Unique NameCF834295
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length598
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_DELAS (S-adenosylmethionine synthetase OS=Delftia acidovorans (strain DSM 14801 / SPH-1) GN=metK PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.933e-28
Identity = 65/117 (55.56%), Postives = 81/117 (69.23%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG AF GKDP KVDR+ AY  R  AK+IVA+GLA +C +QV+YAIGV  P+++ V + GTG IPD EI K+V    D RP  +   LDL R     + K AAYGHFGR++P+FTWE
Sbjct:  266 HGGGAFSGKDPTKVDRSAAYAARYVAKNIVAAGLARQCQIQVAYAIGVARPMNITVYTEGTGVIPDAEIAKLVAAHFDLRPKGIIQMLDLLR---PIYSKTAAYGHFGREEPEFTWE 379          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_CYAP4 (S-adenosylmethionine synthetase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=metK PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.933e-28
Identity = 64/121 (52.89%), Postives = 84/121 (69.42%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKR---GGNGRFLKP-AAYGHFGRDDPDFTWE 591
            HGG AF GKDP KVDR+ AY  R  AK+IVA+GLA +C VQ+SYAIGV  P+S+FVD++GTGKI D+ +L++V++  + RP  M  +  L+       GRF +  AAYGHFGR D +  WE
Sbjct:  279 HGGGAFSGKDPTKVDRSAAYAARYVAKNIVAAGLAEKCEVQLSYAIGVARPVSIFVDTFGTGKIADERLLELVQQHFELRPAGMIQSFGLRHLPSDRGGRFYQDVAAYGHFGRPDLELPWE 399          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_JANMA (S-adenosylmethionine synthetase OS=Janthinobacterium sp. (strain Marseille) GN=metK PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.524e-28
Identity = 64/117 (54.70%), Postives = 83/117 (70.94%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG AF GKDP KVDR+ AY  R  AK+IVA+GLA R  +Q+SYAIGV +P S+ V ++GTGKI D++I ++V E  D RP  +   LDL R     + K AAYGHFGR++P+F+WE
Sbjct:  260 HGGGAFSGKDPSKVDRSAAYAGRYVAKNIVAAGLAERAQIQISYAIGVAKPTSVMVTTFGTGKISDEKIAQLVLEHFDLRPKGIVQMLDLLR---PIYQKTAAYGHFGREEPEFSWE 373          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_ANASK (S-adenosylmethionine synthetase OS=Anaeromyxobacter sp. (strain K) GN=metK PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.524e-28
Identity = 64/119 (53.78%), Postives = 82/119 (68.91%), Query Frame = -2
Query:  241 GAHGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 597
            G HGG AF GKDP KVDR+ AY+ R  AK++VA+GLA RC VQV+YAIGV EP+S+ VD++GT K+P+ +I + V+E     P  +   LDL R     + K AAYGHFGR +  FTWE
Sbjct:  252 GRHGGGAFSGKDPSKVDRSAAYMGRYIAKNVVAAGLASRCEVQVAYAIGVAEPVSVMVDTFGTAKVPEGKIARAVREVFGLTPRAIIEGLDLLR---PVYEKTAAYGHFGRTEKTFTWE 367          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_ANADE (S-adenosylmethionine synthetase OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=metK PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.524e-28
Identity = 64/119 (53.78%), Postives = 82/119 (68.91%), Query Frame = -2
Query:  241 GAHGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 597
            G HGG AF GKDP KVDR+ AY+ R  AK++VA+GLA RC VQV+YAIGV EP+S+ VD++GT K+P+ +I + V+E     P  +   LDL R     + K AAYGHFGR +  FTWE
Sbjct:  252 GRHGGGAFSGKDPSKVDRSAAYMGRYIAKNVVAAGLAARCEVQVAYAIGVAEPVSVMVDTFGTAKVPEGKIARAVREVFGLTPRAIIEGLDLLR---PVYEKTAAYGHFGRTEKTFTWE 367          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_ANAD2 (S-adenosylmethionine synthetase OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=metK PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.524e-28
Identity = 64/119 (53.78%), Postives = 82/119 (68.91%), Query Frame = -2
Query:  241 GAHGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 597
            G HGG AF GKDP KVDR+ AY+ R  AK++VA+GLA RC VQV+YAIGV EP+S+ VD++GT K+P+ +I + V+E     P  +   LDL R     + K AAYGHFGR +  FTWE
Sbjct:  252 GRHGGGAFSGKDPSKVDRSAAYMGRYIAKNVVAAGLASRCEVQVAYAIGVAEPVSVMVDTFGTAKVPEGKIARAVREVFGLTPRAIIEGLDLLR---PVYEKTAAYGHFGRTEKTFTWE 367          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK2_FRASC (S-adenosylmethionine synthetase 2 OS=Frankia sp. (strain CcI3) GN=metK2 PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.524e-28
Identity = 63/117 (53.85%), Postives = 81/117 (69.23%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG AF GKDP KVDR+ AY +R  AK++VA+GLA RC VQV+YAIG  +P+ LFV+++GTG +PD +I   V    D RP  +  +LDL R     + + AAYGHFGR + DFTWE
Sbjct:  271 HGGGAFSGKDPSKVDRSAAYAMRWVAKNVVAAGLASRCEVQVAYAIGKAQPVGLFVETFGTGTVPDIQIQDAVTSVFDLRPAAIIRDLDLLR---PVYAQTAAYGHFGRPELDFTWE 384          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_STACT (S-adenosylmethionine synthetase OS=Staphylococcus carnosus (strain TM300) GN=metK PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.297e-28
Identity = 61/119 (51.26%), Postives = 84/119 (70.59%), Query Frame = -2
Query:  235 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWEVV 591
            HGG  F GKDP KVDR+ AY  R  AK+IVA+GLA +C VQ++YAIGV EP+S+ +D++GTGK+P+ ++++ V+++ D RP  +   LDLKR     + + AAYGHFGR D    WE V
Sbjct:  271 HGGGCFSGKDPTKVDRSAAYAARYVAKNIVAAGLADKCEVQLAYAIGVAEPVSISIDTFGTGKVPESKLVEAVRDNFDLRPAGIIKMLDLKR---PIYKQTAAYGHFGRTDVALPWERV 386          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_RICTY (S-adenosylmethionine synthetase OS=Rickettsia typhi GN=metK PE=3 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 3.297e-28
Identity = 58/117 (49.57%), Postives = 81/117 (69.23%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG  F GKDP K+DR+ AY+ R  AK+IV SGLA RC +Q+SYAIGV  P+S++ +++GT K+ +++  K++ E  D RPG +  NL L       + K A+YGHFGR+D +FTWE
Sbjct:  258 HGGGCFSGKDPTKIDRSAAYMARYIAKNIVGSGLADRCEIQISYAIGVASPVSVYAETFGTSKLSNEQTTKLITEHFDMRPGKIIKNLKLH---TQCYQKTASYGHFGREDENFTWE 371          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_NOCSJ (S-adenosylmethionine synthetase OS=Nocardioides sp. (strain BAA-499 / JS614) GN=metK PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.297e-28
Identity = 62/117 (52.99%), Postives = 82/117 (70.09%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG AF GKDP KVDR+ AY +R  AK++VA+GLA RC  QV+YAIG  +P+ +FV+++GTG + D+ I + V E  D RP  +  +LDL R     + K AAYGHFGR+ P+FTWE
Sbjct:  269 HGGGAFSGKDPSKVDRSAAYAMRWVAKNVVAAGLATRCEAQVAYAIGKAQPVGVFVETFGTGVVDDERIQEAVLEVFDLRPAAIIRDLDLLR---PIYAKTAAYGHFGRELPEFTWE 382          
The following BLAST results are available for this feature:
BLAST of CF834295 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_DELAS1.933e-2855.56S-adenosylmethionine synthetase OS=Delftia acidovo... [more]
METK_CYAP41.933e-2852.89S-adenosylmethionine synthetase OS=Cyanothece sp. ... [more]
METK_JANMA2.524e-2854.70S-adenosylmethionine synthetase OS=Janthinobacteri... [more]
METK_ANASK2.524e-2853.78S-adenosylmethionine synthetase OS=Anaeromyxobacte... [more]
METK_ANADE2.524e-2853.78S-adenosylmethionine synthetase OS=Anaeromyxobacte... [more]
METK_ANAD22.524e-2853.78S-adenosylmethionine synthetase OS=Anaeromyxobacte... [more]
METK2_FRASC2.524e-2853.85S-adenosylmethionine synthetase 2 OS=Frankia sp. (... [more]
METK_STACT3.297e-2851.26S-adenosylmethionine synthetase OS=Staphylococcus ... [more]
METK_RICTY3.297e-2849.57S-adenosylmethionine synthetase OS=Rickettsia typh... [more]
METK_NOCSJ3.297e-2852.99S-adenosylmethionine synthetase OS=Nocardioides sp... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_05E14_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05E14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834295 ID=CF834295; Name=CF834295; organism=Citrus sinensis; type=EST; length=598bp
GGAACATTAAACCAAAACCAAAAAAGACCTCGGGGAAAGAAGAAAAAGAA
AGGAATTGAATGGGGAACATGTATGAGTTCCGAACACAGGAGATTTGCTT
AGTATTACAAAGCAGCAGCAAGATAATATTCAAATTATTCATCCACTACC
AATAGAAGCAAACTTGAACAGGAGGGATAGTTTGCACTTTTCAACTCAAA
TTTAAGCTTGAGGCTTTTCCCACTTGAGGGGCTTCACAACTTCCCAAGTG
AAGTCTGGGTCATCCCTGCCAAAGTGTCCATAGGCAGCAGGCTTCAAGAA
CCTGCCATTACCGCCCCTTTTGAGATCCAAATTGATGGTCATCATTCCTG
GCCTGAAATCAGAGCTTTCCTTCACAATTTTGAGGATCTCCTTGTCAGGA
ATCTTGCCGGTTCCATATGAGTCCACAAAAAGAGACAATGGCTCAGGCAC
ACCTATGGCATACGAGACTTGGACAATGCACCTGGGAGCAAGCCCGCTTG
CAACAATGCTCTTAGCAGCCTGCCTAACAATGTATGCACCAGTCCTATCC
ACCTTAGGAGGGTCTTTTCCAAAGAAAGCACAGCCACCATGGGCTCCC
back to top