CF834295

Overview
NameCF834295
Unique NameCF834295
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length598
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_DESOH (S-adenosylmethionine synthetase OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=metK PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 5.623e-28
Identity = 64/119 (53.78%), Postives = 80/119 (67.23%), Query Frame = -2
Query:  241 GAHGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 597
            G HGG  F GKDP KVDR+ +Y+ R  AK+IVA+G+A RC VQV+YAIGV +P+S+ VD  GTG+IP+ +  +IV+E  D RP  +   LDLKR   G     AAYGHFGR    F WE
Sbjct:  259 GRHGGGCFSGKDPSKVDRSASYMGRHVAKNIVAAGIAKRCEVQVAYAIGVAQPVSVMVDLMGTGRIPEADAERIVREVFDLRPAAIIDYLDLKRPIYG---PTAAYGHFGRTGDSFPWE 374          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_CHRSD (S-adenosylmethionine synthetase OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=metK PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 5.623e-28
Identity = 68/137 (49.64%), Postives = 87/137 (63.50%), Query Frame = -2
Query:  214 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRD--DPDFTW---------EVVKPLKWEK 591
            HGG AF GKDP KVDR+ AY  R  AK++VA+GLA RC +QVSYAIGV EP S+ VD++GTGKI D +I+++V+E  D RP  +T  LDL    +  +   AAYGHFGR+  +  +TW         E      WEK
Sbjct:  260 HGGGAFSGKDPSKVDRSAAYAGRYVAKNVVAAGLAERCEIQVSYAIGVAEPTSVSVDTFGTGKISDAKIVELVREHFDLRPNAITRMLDLL---HPMYQLTAAYGHFGREPFETSYTWTDVGGKQHVETFTAFPWEK 393          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_VEREI (S-adenosylmethionine synthetase OS=Verminephrobacter eiseniae (strain EF01-2) GN=metK PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 7.344e-28
Identity = 62/117 (52.99%), Postives = 82/117 (70.09%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG AF GKDP KVDR+ AY  R  AK++VA+GLA +C +QV+YAIGV EP+++ V + GTG I D+ I  ++K+  D RP  +   LDL R     + K AAYGHFGR++P+FTWE
Sbjct:  266 HGGGAFSGKDPTKVDRSAAYAARHVAKNVVAAGLARQCQIQVAYAIGVAEPMNITVYTEGTGVIADERIAALIKQHFDLRPRGIIQMLDLLR---PIYEKTAAYGHFGREEPEFTWE 379          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_CLAM3 (S-adenosylmethionine synthetase OS=Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382) GN=metK PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 7.344e-28
Identity = 60/119 (50.42%), Postives = 83/119 (69.75%), Query Frame = -2
Query:  235 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWEVV 591
            HGG AF GKDP KVDR+ AY +R  AK+ VA+GLA R  VQV+YAIG   P+ L+V+++GT  +P++ I++ ++E+ D RP  +   LDL R     + + AAYGHFGR+ PDFTWE +
Sbjct:  276 HGGGAFSGKDPSKVDRSAAYAMRWVAKNAVAAGLADRLEVQVAYAIGKAAPVGLYVETFGTAHVPEERIVRAIRETFDLRPAAIVERLDLLR---PIYAQTAAYGHFGRELPDFTWEAL 391          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_STRGG (S-adenosylmethionine synthetase OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=metK PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 9.591e-28
Identity = 62/117 (52.99%), Postives = 81/117 (69.23%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG AF GKDP KVDR+ AY +R  AK++VA+GLA RC VQV+YAIG  EP+ LFV+++GT  +  ++I   + E  D RP  +  +LDL R     + + AAYGHFGR+ PDFTWE
Sbjct:  275 HGGGAFSGKDPSKVDRSAAYAMRWVAKNVVAAGLAARCEVQVAYAIGKAEPVGLFVETFGTAAVDTEKIENAIGEVFDLRPAAIIRDLDLLR---PIYAQTAAYGHFGRELPDFTWE 388          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_ROSCS (S-adenosylmethionine synthetase OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=metK PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 9.591e-28
Identity = 62/117 (52.99%), Postives = 81/117 (69.23%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG AF GKDP KVDR+ AY  R  AK++VA+GLA R  +QVSYAIGV  PLS+ V+ +GT K+P++ I++++ E  D RPG +  +L L+R     +   AAYGHFGRDD D  WE
Sbjct:  278 HGGGAFSGKDPTKVDRSAAYACRWVAKNVVAAGLADRFEIQVSYAIGVARPLSISVECFGTNKVPEETIVRLIDEHFDLRPGAIIRDLRLRR---PIYRPTAAYGHFGRDDIDAPWE 391          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_BACHD (S-adenosylmethionine synthetase OS=Bacillus halodurans GN=metK PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 9.591e-28
Identity = 59/117 (50.43%), Postives = 84/117 (71.79%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG AF GKDP KVDR+GAY  R  AK+IVA+GLA +C VQ++YAIGV +P+S+ +D++GTG++ +  ++++V+E  D RP  +   LDL+R     + + AAYGHFGR D +  WE
Sbjct:  274 HGGGAFSGKDPTKVDRSGAYAARYVAKNIVAAGLADKCEVQLAYAIGVAKPVSISIDTFGTGQVSEARLVELVREHFDLRPAGIIKMLDLRR---PIYKQTAAYGHFGRTDVELPWE 387          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_METPP (S-adenosylmethionine synthetase OS=Methylibium petroleiphilum (strain PM1) GN=metK PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.253e-27
Identity = 62/117 (52.99%), Postives = 82/117 (70.09%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG AF GKDP KVDR+ AY  R  AK+IVA+GLA +C +QV+YAIGV  P+++ V + GTG IPD ++ ++V E  D RP  +   LDL R     + K AAYGHFGR++P+F+WE
Sbjct:  266 HGGGAFSGKDPTKVDRSAAYAARYVAKNIVAAGLARQCQIQVAYAIGVARPMNITVYTEGTGVIPDDQLARLVAEHFDLRPKGIIQMLDLLR---PIYEKTAAYGHFGREEPEFSWE 379          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_CYAP7 (S-adenosylmethionine synthetase OS=Cyanothece sp. (strain PCC 7424) GN=metK PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.253e-27
Identity = 63/120 (52.50%), Postives = 82/120 (68.33%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPG--MMTINLDLKRGGNGRFLKP-AAYGHFGRDDPDFTWE 591
            HGG AF GKDP KVDR+ AY  R  AK+IVA+GLA +C VQVSYAIGV  P+S+ ++++GTGK+ ++++L+ VKE  + RP   +   NL       GRF +  AAYGHFGR D D  WE
Sbjct:  279 HGGGAFSGKDPTKVDRSAAYACRHVAKNIVAAGLADKCEVQVSYAIGVARPVSIMIETFGTGKVSEEKLLEFVKEHFELRPAGIIQAYNLRHIPQERGRFYQDVAAYGHFGRTDLDLPWE 398          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_CLAMS (S-adenosylmethionine synthetase OS=Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / JCM 9667) GN=metK PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.253e-27
Identity = 60/119 (50.42%), Postives = 82/119 (68.91%), Query Frame = -2
Query:  235 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWEVV 591
            HGG AF GKDP KVDR+ AY +R  AK+ VA+GLA R  VQV+YAIG   P+ L+V+++GT  +P+  I++ ++E+ D RP  +   LDL R     + + AAYGHFGR+ PDFTWE +
Sbjct:  276 HGGGAFSGKDPSKVDRSAAYAMRWVAKNAVAAGLADRLEVQVAYAIGKAAPVGLYVEAFGTAHVPEDRIVRAIRETFDLRPAAIVERLDLLR---PIYAETAAYGHFGRELPDFTWEAL 391          
The following BLAST results are available for this feature:
BLAST of CF834295 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_DESOH5.623e-2853.78S-adenosylmethionine synthetase OS=Desulfococcus o... [more]
METK_CHRSD5.623e-2849.64S-adenosylmethionine synthetase OS=Chromohalobacte... [more]
METK_VEREI7.344e-2852.99S-adenosylmethionine synthetase OS=Verminephrobact... [more]
METK_CLAM37.344e-2850.42S-adenosylmethionine synthetase OS=Clavibacter mic... [more]
METK_STRGG9.591e-2852.99S-adenosylmethionine synthetase OS=Streptomyces gr... [more]
METK_ROSCS9.591e-2852.99S-adenosylmethionine synthetase OS=Roseiflexus cas... [more]
METK_BACHD9.591e-2850.43S-adenosylmethionine synthetase OS=Bacillus halodu... [more]
METK_METPP1.253e-2752.99S-adenosylmethionine synthetase OS=Methylibium pet... [more]
METK_CYAP71.253e-2752.50S-adenosylmethionine synthetase OS=Cyanothece sp. ... [more]
METK_CLAMS1.253e-2750.42S-adenosylmethionine synthetase OS=Clavibacter mic... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05E14_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05E14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834295 ID=CF834295; Name=CF834295; organism=Citrus sinensis; type=EST; length=598bp
GGAACATTAAACCAAAACCAAAAAAGACCTCGGGGAAAGAAGAAAAAGAA
AGGAATTGAATGGGGAACATGTATGAGTTCCGAACACAGGAGATTTGCTT
AGTATTACAAAGCAGCAGCAAGATAATATTCAAATTATTCATCCACTACC
AATAGAAGCAAACTTGAACAGGAGGGATAGTTTGCACTTTTCAACTCAAA
TTTAAGCTTGAGGCTTTTCCCACTTGAGGGGCTTCACAACTTCCCAAGTG
AAGTCTGGGTCATCCCTGCCAAAGTGTCCATAGGCAGCAGGCTTCAAGAA
CCTGCCATTACCGCCCCTTTTGAGATCCAAATTGATGGTCATCATTCCTG
GCCTGAAATCAGAGCTTTCCTTCACAATTTTGAGGATCTCCTTGTCAGGA
ATCTTGCCGGTTCCATATGAGTCCACAAAAAGAGACAATGGCTCAGGCAC
ACCTATGGCATACGAGACTTGGACAATGCACCTGGGAGCAAGCCCGCTTG
CAACAATGCTCTTAGCAGCCTGCCTAACAATGTATGCACCAGTCCTATCC
ACCTTAGGAGGGTCTTTTCCAAAGAAAGCACAGCCACCATGGGCTCCC
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