CF834295

Overview
NameCF834295
Unique NameCF834295
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length598
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_CARHZ (S-adenosylmethionine synthetase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=metK PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.253e-27
Identity = 60/117 (51.28%), Postives = 84/117 (71.79%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG AF GKDP KVDR+ AY  R  AK+IVA+G+A +  +Q++YAIGV +P+S+ VD++GTGKI D++I++++K+  D RP  +   LDL+R     + + AAYGHFGR D D  WE
Sbjct:  269 HGGGAFSGKDPTKVDRSAAYAARYVAKNIVAAGIADKIEIQLAYAIGVAKPVSIMVDTFGTGKIADEKIVELIKKHFDLRPAGIIRMLDLRR---PIYKQTAAYGHFGRTDIDLPWE 382          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_ANAVT (S-adenosylmethionine synthetase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=metK PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.253e-27
Identity = 64/121 (52.89%), Postives = 86/121 (71.07%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPG--MMTINL-DLKRGGNGRFLKP-AAYGHFGRDDPDFTWE 591
            HGG AF GKDP KVDR+ AY  R  AK+IVA+GLA +C VQ+SYAIGV  P+S+F+D++GTGK+ D+ +L +VK++ + RP   + + NL +L     GRF +  AAYGH GR+D D  WE
Sbjct:  279 HGGGAFSGKDPTKVDRSAAYAARYVAKNIVAAGLAEKCEVQLSYAIGVARPVSIFLDTFGTGKVDDEILLGLVKDNFELRPAGIIHSFNLRNLPSERGGRFYQDVAAYGHLGRNDLDLPWE 399          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK1_MOUSE (S-adenosylmethionine synthetase isoform type-1 OS=Mus musculus GN=Mat1a PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.253e-27
Identity = 65/124 (52.42%), Postives = 85/124 (68.55%), Query Frame = -2
Query:  226 GAHGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWEVVKPL 597
            GAHGG AF GKD  KVDR+ AY  R  AKS+V +GL  R +VQVSYAIGV EPLS+ + +YGT    ++E+L++V ++ D RPG++  +LDLK+     + K A YGHFGR   +F WEV K L
Sbjct:  276 GAHGGGAFSGKDYTKVDRSAAYAARWVAKSLVKAGLCRRVLVQVSYAIGVAEPLSISIFTYGTSNKTERELLEVVNKNFDLRPGVIVRDLDLKK---PIYQKTACYGHFGRS--EFPWEVPKKL 394          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_SYNJA (S-adenosylmethionine synthetase OS=Synechococcus sp. (strain JA-3-3Ab) GN=metK PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.636e-27
Identity = 62/121 (51.24%), Postives = 81/121 (66.94%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLK---RGGNGRFLK-PAAYGHFGRDDPDFTWE 591
            HGG AF GKDP KVDR+ AY  R  AK+IVA+GLA +C VQVSYAIGV  P++L V+++GTG+IPD+ +L++V+   D RP  +     L+   R   GRF +  A YGHFG+   D  WE
Sbjct:  273 HGGGAFSGKDPTKVDRSAAYAARYVAKNIVAAGLAQKCEVQVSYAIGVARPINLLVETFGTGRIPDEALLRLVQRHFDLRPAAILAQFQLRELPRQRGGRFYQNVAVYGHFGQTHLDLPWE 393          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_STRFR (S-adenosylmethionine synthetase OS=Streptomyces fradiae GN=metK PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.636e-27
Identity = 62/117 (52.99%), Postives = 81/117 (69.23%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG AF GKDP KVDR+ AY +R  AK++VA+GLA RC VQV+YAIG  EP+ LFV+++GT  +  + I + + E  D RP  +  +LDL R     + K AAYGHFGR+ P+FTWE
Sbjct:  280 HGGGAFSGKDPSKVDRSAAYAMRWVAKNVVAAGLASRCEVQVAYAIGKAEPVGLFVETFGTATVDVERIEQAIGEVFDLRPAAIIRDLDLLR---PIYAKTAAYGHFGRELPEFTWE 393          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_STRAW (S-adenosylmethionine synthetase OS=Streptomyces avermitilis GN=metK PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.636e-27
Identity = 62/117 (52.99%), Postives = 81/117 (69.23%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG AF GKDP KVDR+ AY +R  AK++VA+GLA RC VQV+YAIG  EP+ LFV+++GT K+   +I + +    D RP  +  +LDL R     + + AAYGHFGR+ PDFTWE
Sbjct:  275 HGGGAFSGKDPSKVDRSAAYAMRWVAKNVVAAGLASRCEVQVAYAIGKAEPVGLFVETFGTAKVEADKIEQAIATVFDLRPAAIIRDLDLLR---PIYSQTAAYGHFGRELPDFTWE 388          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_SALAI (S-adenosylmethionine synthetase OS=Salinispora arenicola (strain CNS-205) GN=metK PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.636e-27
Identity = 63/117 (53.85%), Postives = 80/117 (68.38%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG AF GKDP KVDR+ AY +R  AK++VA+GLA RC  QV+YAIG   P+SLFV+++GT  +P + I K V E  D RP  +  +L L R     + + AAYGHFGR+ PDFTWE
Sbjct:  272 HGGGAFSGKDPSKVDRSAAYAMRWVAKNVVAAGLAERCEAQVAYAIGKAHPVSLFVETFGTETVPVERIEKAVTEVFDLRPAAIIRDLQLLR---PIYSQTAAYGHFGRELPDFTWE 385          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_PELTS (S-adenosylmethionine synthetase OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=metK PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.636e-27
Identity = 58/117 (49.57%), Postives = 82/117 (70.09%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG +F GKDP KVDR+ +Y  R  AK+IVA+GLA +C  QV+YAIGV  P+S+ VD++GTG++ ++ ++K+VKE  D RP  +   LDL+R     + + + YGHFGR+D D  WE
Sbjct:  269 HGGGSFSGKDPTKVDRSASYAARYVAKNIVAAGLAEKCEFQVAYAIGVAHPVSMMVDTFGTGRVDEQTLVKLVKEHFDLRPAAIIKELDLRR---PIYRQVSVYGHFGRNDLDLPWE 382          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_GEOTN (S-adenosylmethionine synthetase OS=Geobacillus thermodenitrificans (strain NG80-2) GN=metK PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.636e-27
Identity = 59/117 (50.43%), Postives = 82/117 (70.09%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG AF GKDP KVDR+ AY  R  AK+IVA+GLA +C VQ++YAIGV  P+S+ +D++GTGK+ +  ++++V+ + D RP  +   LDL+R     + + AAYGHFGR D D  WE
Sbjct:  272 HGGGAFSGKDPTKVDRSAAYAARYVAKNIVAAGLADKCEVQLAYAIGVARPVSISIDTFGTGKVSEDVLIEVVRNNFDLRPAGIIKMLDLRR---PIYKQTAAYGHFGRTDVDLPWE 385          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK1_BOVIN (S-adenosylmethionine synthetase isoform type-1 OS=Bos taurus GN=MAT1A PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.636e-27
Identity = 65/124 (52.42%), Postives = 85/124 (68.55%), Query Frame = -2
Query:  226 GAHGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWEVVKPL 597
            GAHGG AF GKD  KVDR+ AY  R  AKS+V +GL  R +VQVSYAIGV EPLS+ + +YGT +  ++E+L +V ++ D RPG++  +LDLK+     + K A YGHFGR   +F WEV K L
Sbjct:  276 GAHGGGAFSGKDYTKVDRSAAYAARWVAKSLVKAGLCRRVLVQVSYAIGVAEPLSISIFTYGTSQKTERELLDVVNKNFDLRPGVIVRDLDLKK---PIYQKTACYGHFGRS--EFPWEVPKKL 394          
The following BLAST results are available for this feature:
BLAST of CF834295 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_CARHZ1.253e-2751.28S-adenosylmethionine synthetase OS=Carboxydothermu... [more]
METK_ANAVT1.253e-2752.89S-adenosylmethionine synthetase OS=Anabaena variab... [more]
METK1_MOUSE1.253e-2752.42S-adenosylmethionine synthetase isoform type-1 OS=... [more]
METK_SYNJA1.636e-2751.24S-adenosylmethionine synthetase OS=Synechococcus s... [more]
METK_STRFR1.636e-2752.99S-adenosylmethionine synthetase OS=Streptomyces fr... [more]
METK_STRAW1.636e-2752.99S-adenosylmethionine synthetase OS=Streptomyces av... [more]
METK_SALAI1.636e-2753.85S-adenosylmethionine synthetase OS=Salinispora are... [more]
METK_PELTS1.636e-2749.57S-adenosylmethionine synthetase OS=Pelotomaculum t... [more]
METK_GEOTN1.636e-2750.43S-adenosylmethionine synthetase OS=Geobacillus the... [more]
METK1_BOVIN1.636e-2752.42S-adenosylmethionine synthetase isoform type-1 OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05E14_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05E14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834295 ID=CF834295; Name=CF834295; organism=Citrus sinensis; type=EST; length=598bp
GGAACATTAAACCAAAACCAAAAAAGACCTCGGGGAAAGAAGAAAAAGAA
AGGAATTGAATGGGGAACATGTATGAGTTCCGAACACAGGAGATTTGCTT
AGTATTACAAAGCAGCAGCAAGATAATATTCAAATTATTCATCCACTACC
AATAGAAGCAAACTTGAACAGGAGGGATAGTTTGCACTTTTCAACTCAAA
TTTAAGCTTGAGGCTTTTCCCACTTGAGGGGCTTCACAACTTCCCAAGTG
AAGTCTGGGTCATCCCTGCCAAAGTGTCCATAGGCAGCAGGCTTCAAGAA
CCTGCCATTACCGCCCCTTTTGAGATCCAAATTGATGGTCATCATTCCTG
GCCTGAAATCAGAGCTTTCCTTCACAATTTTGAGGATCTCCTTGTCAGGA
ATCTTGCCGGTTCCATATGAGTCCACAAAAAGAGACAATGGCTCAGGCAC
ACCTATGGCATACGAGACTTGGACAATGCACCTGGGAGCAAGCCCGCTTG
CAACAATGCTCTTAGCAGCCTGCCTAACAATGTATGCACCAGTCCTATCC
ACCTTAGGAGGGTCTTTTCCAAAGAAAGCACAGCCACCATGGGCTCCC
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