CF834295

Overview
NameCF834295
Unique NameCF834295
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length598
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_SALTO (S-adenosylmethionine synthetase OS=Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) GN=metK PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.137e-27
Identity = 62/117 (52.99%), Postives = 80/117 (68.38%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG AF GKDP KVDR+ AY +R  AK++VA+GLA RC  QV+YAIG   P+SLF++++GT  +P + I K V E  D RP  +  +L L R     + + AAYGHFGR+ PDFTWE
Sbjct:  272 HGGGAFSGKDPSKVDRSAAYAMRWVAKNVVAAGLAERCEAQVAYAIGKAHPVSLFIETFGTETVPVERIEKAVTEVFDLRPAAIIRDLKLTR---PIYSQTAAYGHFGRELPDFTWE 385          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_GLOVI (S-adenosylmethionine synthetase OS=Gloeobacter violaceus GN=metK PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.137e-27
Identity = 63/121 (52.07%), Postives = 82/121 (67.77%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKR---GGNGRFLKP-AAYGHFGRDDPDFTWE 591
            HGG AF GKDP KVDR+ AY  R  AK+IVA+ LA RC VQV+YAIGV  P+S+FV+++GTG++ D+ ++ +V+E  D RP  +  + DL R      GRF +  AAYGH GR D D  WE
Sbjct:  281 HGGGAFSGKDPTKVDRSAAYAARYVAKNIVAAELADRCEVQVAYAIGVARPVSIFVETFGTGRVSDEALMLLVREHFDLRPAAILRDFDLCRLPAQRGGRFYQDVAAYGHLGRPDLDLPWE 401          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_GEOKA (S-adenosylmethionine synthetase OS=Geobacillus kaustophilus GN=metK PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.137e-27
Identity = 62/129 (48.06%), Postives = 85/129 (65.89%), Query Frame = -2
Query:  205 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWEVVKPLKWEKPQA 591
            HGG AF GKDP KVDR+ AY  R  AK+IVA+GLA +C VQ++YAIGV  P+S+ +D++GTGK+ +  ++++V+ + D RP  +   LDL+R     + + AAYGHFGR D D  WE        K QA
Sbjct:  272 HGGGAFSGKDPTKVDRSAAYAARYVAKNIVAAGLADKCEVQLAYAIGVARPVSISIDTFGTGKVSEDILIEVVRNNFDLRPAGIIKMLDLRR---PIYKQTAAYGHFGRTDIDLPWERTDKAALLKEQA 397          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_DESDG (S-adenosylmethionine synthetase OS=Desulfovibrio desulfuricans (strain G20) GN=metK PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.137e-27
Identity = 59/119 (49.58%), Postives = 84/119 (70.59%), Query Frame = -2
Query:  241 GAHGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 597
            G+HGG AF GKDP KVDR+GAY+ R  AK++VA+GLAP+C VQ++Y IGV +P+S+   S G+  I D+ + + V++  D RP  ++  LDL+R     + K A YGHFGR+ P+F+WE
Sbjct:  262 GSHGGGAFSGKDPSKVDRSGAYMGRYIAKNVVAAGLAPKCEVQIAYCIGVADPVSVLCTSLGSSDISDEVLTQAVRDVFDLRPYHISKRLDLRR---PIYKKSACYGHFGREIPEFSWE 377          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_ALHEH (S-adenosylmethionine synthetase OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=metK PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.137e-27
Identity = 62/117 (52.99%), Postives = 80/117 (68.38%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG  F GKDP KVDR+ AY  R  AK+IVA+GLA RC +QVSYAIGV EP S+ V+++GTG++  +++ +IV+E  D RP  +   LDL R     +   AAYGHFGR+D  F WE
Sbjct:  258 HGGGCFSGKDPSKVDRSAAYACRYVAKNIVAAGLAERCEIQVSYAIGVAEPTSISVETFGTGRVDSEKLTRIVREHFDLRPYGILKMLDLIR---PIYTATAAYGHFGREDEGFPWE 371          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK3_CAEEL (Probable S-adenosylmethionine synthetase 3 OS=Caenorhabditis elegans GN=sams-3 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.137e-27
Identity = 66/125 (52.80%), Postives = 85/125 (68.00%), Query Frame = -2
Query:  223 GAHGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWEVVKPLK 597
            GAHGG AF GKDP KVDR+ AY  R  AKS+V SGL  RC+VQVSYAIGV +PLS+ V S+GT  + + E+LKIV ++ D RPGM+  +LDLK+     +   A  GHFG +  +F WE  + L+
Sbjct:  263 GAHGGGAFSGKDPTKVDRSAAYAARWVAKSLVKSGLCRRCLVQVSYAIGVAKPLSVMVFSFGTSALNEGELLKIVNDNFDLRPGMIIKDLDLKK---PIYEPTAENGHFGHN--EFPWEQPRHLQ 382          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_THELT (S-adenosylmethionine synthetase OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) GN=metK PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.791e-27
Identity = 58/117 (49.57%), Postives = 83/117 (70.94%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG AF GKDP KVDR+  Y+ R  AK++VA+GLA R ++QV+YAIG   P+SL +D++ T K+ ++++  ++ +  DFRP  +   L+L+R     + K AAYGHFGR+DPDFTWE
Sbjct:  269 HGGGAFSGKDPTKVDRSAHYMARYVAKNVVAAGLADRFMIQVAYAIGKARPVSLMIDTFSTSKVDEEKLKDVIIQLFDFRPLAIINKLNLQR---PIYKKTAAYGHFGRNDPDFTWE 382          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_SYNE7 (S-adenosylmethionine synthetase OS=Synechococcus elongatus (strain PCC 7942) GN=metK PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.791e-27
Identity = 62/121 (51.24%), Postives = 85/121 (70.25%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKR---GGNGRFLKP-AAYGHFGRDDPDFTWE 591
            HGG AF GKDP KVDR+ AY  R  AK+IVA+GLA +C VQ+SYAIGV  P+S+ V+++GTGK+ D+ +L +V++  + RP  +  + +L+R      GRF +  AAYGHFGR+D D  WE
Sbjct:  279 HGGGAFSGKDPTKVDRSAAYACRYVAKNIVAAGLAEKCEVQLSYAIGVARPVSVLVETFGTGKVADEVLLDLVRKHFELRPAGIIEHFNLQRLPGERGGRFYQEVAAYGHFGRNDLDLPWE 399          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_PROM4 (S-adenosylmethionine synthetase OS=Prochlorococcus marinus (strain MIT 9211) GN=metK PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.791e-27
Identity = 65/123 (52.85%), Postives = 84/123 (68.29%), Query Frame = -2
Query:  235 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKR---GGNGRFLK-PAAYGHFGRDDPDFTWEVV 591
            HGG AF GKDP KVDR+ AY  R  AKSIVA+ LA R  VQ+SYAIGV  P+S+ V++YG+GK+ ++E+ K+VK+  D RPG +    +LK      +GRF +  AAYGHFGR D +  WE V
Sbjct:  276 HGGGAFSGKDPTKVDRSAAYAARFVAKSIVAAKLAKRVEVQLSYAIGVANPVSILVEAYGSGKMSNQELTKVVKKHFDLRPGAIIEQFNLKNLPSKRSGRFYRDTAAYGHFGRPDLNLPWEKV 398          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_LEIXX (S-adenosylmethionine synthetase OS=Leifsonia xyli subsp. xyli GN=metK PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.791e-27
Identity = 59/117 (50.43%), Postives = 80/117 (68.38%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG AF GKDP KVDR+ AY +R  AK+ VA+GLA R  VQ++YAIG   P+ L+V+++GT  +PD+ I+  ++E  D RP  +  +LDL R     + + A YGHFGR+ PDFTWE
Sbjct:  270 HGGGAFSGKDPSKVDRSAAYALRWVAKNAVAAGLADRLEVQIAYAIGKAAPVGLYVETFGTAHVPDERIIHAIREVFDLRPAAIARDLDLLR---PIYARTATYGHFGRELPDFTWE 383          
The following BLAST results are available for this feature:
BLAST of CF834295 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_SALTO2.137e-2752.99S-adenosylmethionine synthetase OS=Salinispora tro... [more]
METK_GLOVI2.137e-2752.07S-adenosylmethionine synthetase OS=Gloeobacter vio... [more]
METK_GEOKA2.137e-2748.06S-adenosylmethionine synthetase OS=Geobacillus kau... [more]
METK_DESDG2.137e-2749.58S-adenosylmethionine synthetase OS=Desulfovibrio d... [more]
METK_ALHEH2.137e-2752.99S-adenosylmethionine synthetase OS=Alkalilimnicola... [more]
METK3_CAEEL2.137e-2752.80Probable S-adenosylmethionine synthetase 3 OS=Caen... [more]
METK_THELT2.791e-2749.57S-adenosylmethionine synthetase OS=Thermotoga lett... [more]
METK_SYNE72.791e-2751.24S-adenosylmethionine synthetase OS=Synechococcus e... [more]
METK_PROM42.791e-2752.85S-adenosylmethionine synthetase OS=Prochlorococcus... [more]
METK_LEIXX2.791e-2750.43S-adenosylmethionine synthetase OS=Leifsonia xyli ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05E14_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05E14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834295 ID=CF834295; Name=CF834295; organism=Citrus sinensis; type=EST; length=598bp
GGAACATTAAACCAAAACCAAAAAAGACCTCGGGGAAAGAAGAAAAAGAA
AGGAATTGAATGGGGAACATGTATGAGTTCCGAACACAGGAGATTTGCTT
AGTATTACAAAGCAGCAGCAAGATAATATTCAAATTATTCATCCACTACC
AATAGAAGCAAACTTGAACAGGAGGGATAGTTTGCACTTTTCAACTCAAA
TTTAAGCTTGAGGCTTTTCCCACTTGAGGGGCTTCACAACTTCCCAAGTG
AAGTCTGGGTCATCCCTGCCAAAGTGTCCATAGGCAGCAGGCTTCAAGAA
CCTGCCATTACCGCCCCTTTTGAGATCCAAATTGATGGTCATCATTCCTG
GCCTGAAATCAGAGCTTTCCTTCACAATTTTGAGGATCTCCTTGTCAGGA
ATCTTGCCGGTTCCATATGAGTCCACAAAAAGAGACAATGGCTCAGGCAC
ACCTATGGCATACGAGACTTGGACAATGCACCTGGGAGCAAGCCCGCTTG
CAACAATGCTCTTAGCAGCCTGCCTAACAATGTATGCACCAGTCCTATCC
ACCTTAGGAGGGTCTTTTCCAAAGAAAGCACAGCCACCATGGGCTCCC
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