CF834295

Overview
NameCF834295
Unique NameCF834295
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length598
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_CYAA5 (S-adenosylmethionine synthetase OS=Cyanothece sp. (strain ATCC 51142) GN=metK PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.791e-27
Identity = 64/121 (52.89%), Postives = 83/121 (68.60%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPG--MMTINL-DLKRGGNGRFLKP-AAYGHFGRDDPDFTWE 591
            HGG AF GKDP KVDR+ AY  R  AK+IVA+GLA +C VQ+SYAIGV  P+S+ V+++GTGK+ + ++L  VKE  + RP   +  +NL  L     GRF +  AAYGHFGR+D D  WE
Sbjct:  279 HGGGAFSGKDPTKVDRSAAYACRYVAKNIVAAGLAEKCEVQLSYAIGVARPVSILVETFGTGKVDENKLLDAVKELFELRPAGIIQALNLRQLPSQRGGRFYQDVAAYGHFGRNDLDLPWE 399          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_THEM4 (S-adenosylmethionine synthetase OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=metK PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.645e-27
Identity = 61/117 (52.14%), Postives = 82/117 (70.09%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG AF GKDP KVDR+  Y  R  AK++VA+GLA + ++QV+YAIG  +P+S+ +++YGT KI + +ILK V E  DFRPG +   L+L R     + K AAYGHFGR+  +FTWE
Sbjct:  270 HGGGAFSGKDPTKVDRSAHYFARYVAKNVVAAGLADKFMIQVAYAIGKAKPVSVMINTYGTAKIDEDKILKAVLELFDFRPGAIIKKLNLLR---PIYKKTAAYGHFGRELEEFTWE 383          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_SYNS9 (S-adenosylmethionine synthetase OS=Synechococcus sp. (strain CC9902) GN=metK PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.645e-27
Identity = 63/123 (51.22%), Postives = 85/123 (69.11%), Query Frame = -2
Query:  235 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLK---RGGNGRFLK-PAAYGHFGRDDPDFTWEVV 591
            HGG AF GKDP KVDR+ AY  R  AK++VASGLA R  VQ+SYAIGV +P+S+ V+S+GTG + ++++  +V+E  D RPG +  N  L+   +   GRF +  AAYGHFGR+D +  WE V
Sbjct:  276 HGGGAFSGKDPTKVDRSAAYAARFVAKALVASGLAGRAEVQLSYAIGVAKPVSILVESFGTGTVSNEDLTALVQEHFDLRPGAIIENFGLRNLPQARGGRFYQNTAAYGHFGRNDLNLPWEDV 398          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_SYNPX (S-adenosylmethionine synthetase OS=Synechococcus sp. (strain WH8102) GN=metK PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.645e-27
Identity = 67/125 (53.60%), Postives = 85/125 (68.00%), Query Frame = -2
Query:  235 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMM-----TINLDLKRGGNGRFLK-PAAYGHFGRDDPDFTWEVV 591
            HGG AF GKDP KVDR+ AY  R  AK +VASGLA R  VQ+SYAIGV +P+S+ V+S+GTGK+ + E+ ++V+E  D RPG +       NL  +RG  GRF +  AAYGHFGR+D    WE V
Sbjct:  276 HGGGAFSGKDPTKVDRSAAYAARYVAKCLVASGLAERAEVQLSYAIGVAKPVSILVESFGTGKVSNAELTELVQEHFDLRPGAIIETFGLRNLPQQRG--GRFYQDTAAYGHFGRNDLKAPWEDV 398          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_STRST (S-adenosylmethionine synthetase OS=Streptomyces spectabilis GN=metK PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.645e-27
Identity = 62/117 (52.99%), Postives = 80/117 (68.38%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG AF GKDP KVDR+ AY +R  AK++VA+GLA RC VQV+YAIG  EP+ LFV+++GT  I   +I + + E  D RP  +  +LDL R     + + AAYGHFGR  P+FTWE
Sbjct:  275 HGGGAFSGKDPSKVDRSAAYAMRWVAKNVVAAGLASRCEVQVAYAIGKAEPVGLFVETFGTNTIDTDKIEQAISEVFDLRPAAIIRDLDLLR---PIYSQTAAYGHFGRSLPEFTWE 388          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_RHOBA (S-adenosylmethionine synthetase OS=Rhodopirellula baltica GN=metK PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.645e-27
Identity = 62/119 (52.10%), Postives = 82/119 (68.91%), Query Frame = -2
Query:  241 GAHGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 597
            G HGG AF GKD  KVDR+ AY+ R  AK+IVA+GLA RC VQ++YAIGV EP+S+ VD+ GTGKI D ++ ++++E     PG +  +L L+R     F++  A GHFGRD   FTWE
Sbjct:  262 GRHGGGAFSGKDSTKVDRSAAYMARYVAKNIVAAGLAERCEVQLAYAIGVTEPVSVHVDTEGTGKIEDAKLCELIREHFPLTPGGIIDHLQLRR---PVFVETTAGGHFGRDGEGFTWE 377          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_NEUCR (S-adenosylmethionine synthetase OS=Neurospora crassa GN=eth-1 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.645e-27
Identity = 64/126 (50.79%), Postives = 88/126 (69.84%), Query Frame = -2
Query:  220 GAHGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWEVVKPLKW 597
            GAHGG AF GKD  KVDR+ AY+ R  AKS+VA+GLA R +VQ+SYAIGV EPLS++VD+YGT     +E+++I++ + D RPG++   LDL +     +L+ A  GHFG +   F+WE  K LK+
Sbjct:  274 GAHGGGAFSGKDFSKVDRSAAYVGRWIAKSLVAAGLARRALVQLSYAIGVAEPLSIYVDTYGTSDKTSEELVQIIRNNFDLRPGVIVKELDLAK---PIYLQTAKNGHFGTNQ-SFSWEKPKALKF 395          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_LEPIN (S-adenosylmethionine synthetase OS=Leptospira interrogans GN=metK PE=3 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 3.645e-27
Identity = 60/119 (50.42%), Postives = 84/119 (70.59%), Query Frame = -2
Query:  241 GAHGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 597
            G HGG AF GKDP KVDR+ AY+ R  AK++VASGLA +C VQ++YAIGV EP+S+ VD++GTGKI ++E++K ++ +    P  +  +L L   G  ++ + A+YGHFGR    FTWE
Sbjct:  259 GRHGGGAFSGKDPSKVDRSAAYMGRYIAKNVVASGLADKCEVQLAYAIGVAEPVSVHVDTFGTGKISEEELVKRIRANFKLTPRGIIESLKLLEKGR-KYRETASYGHFGRKGSTFTWE 376          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_LEPIC (S-adenosylmethionine synthetase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=metK PE=3 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 3.645e-27
Identity = 60/119 (50.42%), Postives = 84/119 (70.59%), Query Frame = -2
Query:  241 GAHGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 597
            G HGG AF GKDP KVDR+ AY+ R  AK++VASGLA +C VQ++YAIGV EP+S+ VD++GTGKI ++E++K ++ +    P  +  +L L   G  ++ + A+YGHFGR    FTWE
Sbjct:  259 GRHGGGAFSGKDPSKVDRSAAYMGRYIAKNVVASGLADKCEVQLAYAIGVAEPVSVHVDTFGTGKISEEELVKRIRANFKLTPRGIIESLKLLEKGR-KYRETASYGHFGRKGSTFTWE 376          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_LEPBL (S-adenosylmethionine synthetase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=metK PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.645e-27
Identity = 60/119 (50.42%), Postives = 84/119 (70.59%), Query Frame = -2
Query:  241 GAHGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 597
            G HGG AF GKDP KVDR+ AY+ R  AK++VASGLA +C VQ++YAIGV EP+S+ VD++GTGKI ++E++K ++ +    P  +  +L L   G  ++ + A+YGHFGR    FTWE
Sbjct:  259 GRHGGGAFSGKDPSKVDRSAAYMGRYIAKNVVASGLADKCEVQLAYAIGVAEPVSVHVDTFGTGKISEEELVKRIRANFKLTPRGIIESLKLLEKGR-KYRETASYGHFGRKGSTFTWE 376          
The following BLAST results are available for this feature:
BLAST of CF834295 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_CYAA52.791e-2752.89S-adenosylmethionine synthetase OS=Cyanothece sp. ... [more]
METK_THEM43.645e-2752.14S-adenosylmethionine synthetase OS=Thermosipho mel... [more]
METK_SYNS93.645e-2751.22S-adenosylmethionine synthetase OS=Synechococcus s... [more]
METK_SYNPX3.645e-2753.60S-adenosylmethionine synthetase OS=Synechococcus s... [more]
METK_STRST3.645e-2752.99S-adenosylmethionine synthetase OS=Streptomyces sp... [more]
METK_RHOBA3.645e-2752.10S-adenosylmethionine synthetase OS=Rhodopirellula ... [more]
METK_NEUCR3.645e-2750.79S-adenosylmethionine synthetase OS=Neurospora cras... [more]
METK_LEPIN3.645e-2750.42S-adenosylmethionine synthetase OS=Leptospira inte... [more]
METK_LEPIC3.645e-2750.42S-adenosylmethionine synthetase OS=Leptospira inte... [more]
METK_LEPBL3.645e-2750.42S-adenosylmethionine synthetase OS=Leptospira borg... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05E14_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05E14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834295 ID=CF834295; Name=CF834295; organism=Citrus sinensis; type=EST; length=598bp
GGAACATTAAACCAAAACCAAAAAAGACCTCGGGGAAAGAAGAAAAAGAA
AGGAATTGAATGGGGAACATGTATGAGTTCCGAACACAGGAGATTTGCTT
AGTATTACAAAGCAGCAGCAAGATAATATTCAAATTATTCATCCACTACC
AATAGAAGCAAACTTGAACAGGAGGGATAGTTTGCACTTTTCAACTCAAA
TTTAAGCTTGAGGCTTTTCCCACTTGAGGGGCTTCACAACTTCCCAAGTG
AAGTCTGGGTCATCCCTGCCAAAGTGTCCATAGGCAGCAGGCTTCAAGAA
CCTGCCATTACCGCCCCTTTTGAGATCCAAATTGATGGTCATCATTCCTG
GCCTGAAATCAGAGCTTTCCTTCACAATTTTGAGGATCTCCTTGTCAGGA
ATCTTGCCGGTTCCATATGAGTCCACAAAAAGAGACAATGGCTCAGGCAC
ACCTATGGCATACGAGACTTGGACAATGCACCTGGGAGCAAGCCCGCTTG
CAACAATGCTCTTAGCAGCCTGCCTAACAATGTATGCACCAGTCCTATCC
ACCTTAGGAGGGTCTTTTCCAAAGAAAGCACAGCCACCATGGGCTCCC
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