CF834295

Overview
NameCF834295
Unique NameCF834295
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length598
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_LEPBJ (S-adenosylmethionine synthetase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=metK PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.645e-27
Identity = 60/119 (50.42%), Postives = 84/119 (70.59%), Query Frame = -2
Query:  241 GAHGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 597
            G HGG AF GKDP KVDR+ AY+ R  AK++VASGLA +C VQ++YAIGV EP+S+ VD++GTGKI ++E++K ++ +    P  +  +L L   G  ++ + A+YGHFGR    FTWE
Sbjct:  259 GRHGGGAFSGKDPSKVDRSAAYMGRYIAKNVVASGLADKCEVQLAYAIGVAEPVSVHVDTFGTGKISEEELVKRIRANFKLTPRGIIESLKLLEKGR-KYRETASYGHFGRKGSTFTWE 376          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_DICNV (S-adenosylmethionine synthetase OS=Dichelobacter nodosus (strain VCS1703A) GN=metK PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.645e-27
Identity = 63/117 (53.85%), Postives = 79/117 (67.52%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG AF GKDP KVDR+ AY  R  AK++VA+GLA RC VQ+SYAIG+ EP S+ V+++GTG I D EI++ V+   D  P  +   LDL R     + K A YGHFGR+ P FTWE
Sbjct:  258 HGGGAFSGKDPSKVDRSAAYAARYVAKNVVAAGLATRCEVQLSYAIGIAEPTSIMVNTFGTGTIDDAEIVRRVQAVFDLTPYGIIEMLDLVR---PIYQKTAVYGHFGRELPQFTWE 371          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_ANADF (S-adenosylmethionine synthetase OS=Anaeromyxobacter sp. (strain Fw109-5) GN=metK PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.645e-27
Identity = 61/119 (51.26%), Postives = 82/119 (68.91%), Query Frame = -2
Query:  241 GAHGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 597
            G HGG AF GKDP KVDR+ AY+ R  AK++VA+GLA RC VQV+YAIGV EP+S+ V+++GT  +P++ I + V+E     P  +   LDL R     + K AAYGHFGR + +F+WE
Sbjct:  252 GRHGGGAFSGKDPSKVDRSAAYMGRYIAKNVVAAGLARRCEVQVAYAIGVAEPVSVMVETFGTAAVPEERIAQAVREVFGLTPKQIIEGLDLLR---PVYEKTAAYGHFGRTEKEFSWE 367          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK1_FRASC (S-adenosylmethionine synthetase 1 OS=Frankia sp. (strain CcI3) GN=metK1 PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.645e-27
Identity = 63/117 (53.85%), Postives = 80/117 (68.38%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG AF GKDP KVDR+ AY +R  AK++VA+GLA R  +QV+YAIG  EP+ LFV+++GT  +P  EI + V E  D RP  +  +LDL R   G   + A+YGHFGR  PDFTWE
Sbjct:  274 HGGGAFSGKDPSKVDRSAAYALRWVAKNVVAAGLARRAELQVAYAIGKAEPVGLFVETFGTETVPVPEIARAVSEVFDLRPAAIIRDLDLLRPIYG---QTASYGHFGRTLPDFTWE 387          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_SHEFN (S-adenosylmethionine synthetase OS=Shewanella frigidimarina (strain NCIMB 400) GN=metK PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 4.760e-27
Identity = 62/117 (52.99%), Postives = 83/117 (70.94%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG AF GKDP KVDR+ AY  R  AK+IVA+GLA RC +QVSYAIGV EP S+ ++++GTGK+ ++ ++K+V++  + RP  +T  LDL R     + + AAYGHFGRD   F WE
Sbjct:  258 HGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRCELQVSYAIGVAEPTSISIETFGTGKVSEEVLIKLVRQHFELRPYGLTAMLDLAR---PIYQQTAAYGHFGRD--IFPWE 369          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_SHEDO (S-adenosylmethionine synthetase OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=metK PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 4.760e-27
Identity = 61/117 (52.14%), Postives = 83/117 (70.94%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG AF GKDP KVDR+ AY  R  AK+IVA+GLA RC +QVSYAIGV EP S+ ++++GTGK+ ++ ++K+V++  + RP  +T  LDL R     + + AAYGHFGR+   F WE
Sbjct:  258 HGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRCEIQVSYAIGVAEPTSISIETFGTGKVSEEVLIKLVRQHFELRPYGLTAMLDLAR---PIYQQTAAYGHFGRE--GFPWE 369          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_MOOTA (S-adenosylmethionine synthetase OS=Moorella thermoacetica (strain ATCC 39073) GN=metK PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 4.760e-27
Identity = 58/117 (49.57%), Postives = 80/117 (68.38%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG A  GKDP KVDR+ AY  R  AK++VA+GLA RC VQV+YAIGV  P+S+ V+++GTGK+ D  ++++++   D RPG +  +LDL+R     +   + YGHFGR D D  WE
Sbjct:  268 HGGGALSGKDPTKVDRSAAYAARYVAKNVVAAGLADRCEVQVAYAIGVARPVSISVETFGTGKVSDDRLVELIRAHFDLRPGAIIRDLDLRR---PIYKAVSVYGHFGRPDLDLPWE 381          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_CLOTH (S-adenosylmethionine synthetase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=metK PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 4.760e-27
Identity = 62/117 (52.99%), Postives = 81/117 (69.23%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG AF GKDP KVDR+ AY  R  AK+IVA+GLA +C VQ++YAIGV  P+S+ VD++GTG IP+++I  +V +  D RP  +   LDL+R     + + AAYGHFGR D D  WE
Sbjct:  269 HGGGAFSGKDPTKVDRSAAYAARYVAKNIVAAGLARKCEVQLAYAIGVARPVSVRVDTFGTGIIPEEKIESLVNKYFDLRPAGIIKTLDLRR---PIYKQTAAYGHFGRTDIDLPWE 382          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_CLOAB (S-adenosylmethionine synthetase OS=Clostridium acetobutylicum GN=metK PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 4.760e-27
Identity = 60/119 (50.42%), Postives = 86/119 (72.27%), Query Frame = -2
Query:  241 GAHGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 597
            G HGG AF GKDP KVDR+ AY  R  AK++VA+G+A +  +Q++YAIGV +P+S+ VD++GTGKI + +I++IV++  D RPG +  +L+LKR     + + AAYGHFGR D +  WE
Sbjct:  264 GRHGGGAFSGKDPTKVDRSAAYAARWVAKNLVAAGIADKLEIQLAYAIGVAKPVSISVDTFGTGKIEESKIVEIVEKVFDLRPGAIIRDLNLKR---PIYRQVAAYGHFGRLDVELPWE 379          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK4_CAEEL (Probable S-adenosylmethionine synthetase 4 OS=Caenorhabditis elegans GN=sams-4 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 4.760e-27
Identity = 65/125 (52.00%), Postives = 84/125 (67.20%), Query Frame = -2
Query:  223 GAHGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWEVVKPLK 597
            GAHGG AF GKDP KVDR+ AY  R  AKS+V +GL  RC+VQVSYAIGV +PLS+ V S+GT  + ++++L IV ++ D RPG +  NLDLKR     +   A  GHFG +  +F WE  + LK
Sbjct:  263 GAHGGGAFSGKDPTKVDRSAAYAARWVAKSLVKAGLCRRCLVQVSYAIGVAKPLSVMVFSFGTSALSEEDLLTIVNDNFDLRPGKIIKNLDLKR---PIYEPTAENGHFGHN--NFPWEQPRNLK 382          
The following BLAST results are available for this feature:
BLAST of CF834295 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_LEPBJ3.645e-2750.42S-adenosylmethionine synthetase OS=Leptospira borg... [more]
METK_DICNV3.645e-2753.85S-adenosylmethionine synthetase OS=Dichelobacter n... [more]
METK_ANADF3.645e-2751.26S-adenosylmethionine synthetase OS=Anaeromyxobacte... [more]
METK1_FRASC3.645e-2753.85S-adenosylmethionine synthetase 1 OS=Frankia sp. (... [more]
METK_SHEFN4.760e-2752.99S-adenosylmethionine synthetase OS=Shewanella frig... [more]
METK_SHEDO4.760e-2752.14S-adenosylmethionine synthetase OS=Shewanella deni... [more]
METK_MOOTA4.760e-2749.57S-adenosylmethionine synthetase OS=Moorella thermo... [more]
METK_CLOTH4.760e-2752.99S-adenosylmethionine synthetase OS=Clostridium the... [more]
METK_CLOAB4.760e-2750.42S-adenosylmethionine synthetase OS=Clostridium ace... [more]
METK4_CAEEL4.760e-2752.00Probable S-adenosylmethionine synthetase 4 OS=Caen... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05E14_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05E14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834295 ID=CF834295; Name=CF834295; organism=Citrus sinensis; type=EST; length=598bp
GGAACATTAAACCAAAACCAAAAAAGACCTCGGGGAAAGAAGAAAAAGAA
AGGAATTGAATGGGGAACATGTATGAGTTCCGAACACAGGAGATTTGCTT
AGTATTACAAAGCAGCAGCAAGATAATATTCAAATTATTCATCCACTACC
AATAGAAGCAAACTTGAACAGGAGGGATAGTTTGCACTTTTCAACTCAAA
TTTAAGCTTGAGGCTTTTCCCACTTGAGGGGCTTCACAACTTCCCAAGTG
AAGTCTGGGTCATCCCTGCCAAAGTGTCCATAGGCAGCAGGCTTCAAGAA
CCTGCCATTACCGCCCCTTTTGAGATCCAAATTGATGGTCATCATTCCTG
GCCTGAAATCAGAGCTTTCCTTCACAATTTTGAGGATCTCCTTGTCAGGA
ATCTTGCCGGTTCCATATGAGTCCACAAAAAGAGACAATGGCTCAGGCAC
ACCTATGGCATACGAGACTTGGACAATGCACCTGGGAGCAAGCCCGCTTG
CAACAATGCTCTTAGCAGCCTGCCTAACAATGTATGCACCAGTCCTATCC
ACCTTAGGAGGGTCTTTTCCAAAGAAAGCACAGCCACCATGGGCTCCC
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