CF834295

Overview
NameCF834295
Unique NameCF834295
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length598
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK1_HUMAN (S-adenosylmethionine synthetase isoform type-1 OS=Homo sapiens GN=MAT1A PE=1 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 4.760e-27
Identity = 64/124 (51.61%), Postives = 85/124 (68.55%), Query Frame = -2
Query:  226 GAHGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWEVVKPL 597
            GAHGG AF GKD  KVDR+ AY  R  AKS+V +GL  R +VQVSYAIGV EPLS+ + +YGT +  ++E+L +V ++ D RPG++  +LDLK+     + K A YGHFGR   +F WEV + L
Sbjct:  275 GAHGGGAFSGKDYTKVDRSAAYAARWVAKSLVKAGLCRRVLVQVSYAIGVAEPLSISIFTYGTSQKTERELLDVVHKNFDLRPGVIVRDLDLKK---PIYQKTACYGHFGRS--EFPWEVPRKL 393          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_SHEAM (S-adenosylmethionine synthetase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=metK PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 6.217e-27
Identity = 61/117 (52.14%), Postives = 83/117 (70.94%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG AF GKDP KVDR+ AY  R  AK+IVA+GLA RC +QVSYAIGV EP S+ ++++GTGK+P+ +++ +V++  D RP  +T  L+L R     +   AAYGHFGR+  +F WE
Sbjct:  258 HGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRCEIQVSYAIGVAEPTSISIETFGTGKLPEDKLIALVRQHFDLRPYGLTEMLNLAR---PIYQATAAYGHFGRN--EFPWE 369          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_SCHPO (S-adenosylmethionine synthetase OS=Schizosaccharomyces pombe GN=sam1 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 6.217e-27
Identity = 64/126 (50.79%), Postives = 86/126 (68.25%), Query Frame = -2
Query:  220 GAHGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWEVVKPLKW 597
            GAHGG AF GKD  KVDR+ AY  R  AKS+VA+GLA RC+VQ+SYAIGV EPLS+FV++YGT      E+++I++++ D RPG++  +L L+      +L  A+YGHF   D    WE  K LK+
Sbjct:  262 GAHGGGAFSGKDYSKVDRSAAYAARWIAKSLVAAGLARRCLVQLSYAIGVAEPLSIFVNTYGTSSKTSAELVEIIRKNFDLRPGVLVKSLKLQ---TPFYLSTASYGHF--TDQSKPWEQPKELKF 382          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_ROSS1 (S-adenosylmethionine synthetase OS=Roseiflexus sp. (strain RS-1) GN=metK PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 6.217e-27
Identity = 61/117 (52.14%), Postives = 80/117 (68.38%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG AF GKDP KVDR+ AY  R  AK++VA+GLA R  +QV+YAIGV  PLS+ V+ +GT K+ ++ IL+++ E  D RPG +  +L L+R     +   AAYGHFGRDD D  WE
Sbjct:  278 HGGGAFSGKDPTKVDRSAAYACRWVAKNVVAAGLADRFEIQVAYAIGVAHPLSISVECFGTNKVSEETILRLINEHFDLRPGAIIRDLRLRR---PIYRPTAAYGHFGRDDIDAPWE 391          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_RHILO (S-adenosylmethionine synthetase OS=Rhizobium loti GN=metK PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 6.217e-27
Identity = 63/119 (52.94%), Postives = 80/119 (67.23%), Query Frame = -2
Query:  241 GAHGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 597
            G HGG AF GKDP KVDR+ AY  R  AK+IVASGLA  C VQ++YAIGV  P+S+ V+++GT +I +K I  +V E  D RP  +   LDL R     +   A YGHFGR++P+FTWE
Sbjct:  259 GRHGGGAFSGKDPSKVDRSAAYAARYVAKNIVASGLAEVCEVQLAYAIGVASPVSVMVNTFGTARIEEKRIECLVLELFDLRPKGIIKMLDLVR---PIYRNTATYGHFGREEPEFTWE 374          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_PSEF5 (S-adenosylmethionine synthetase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=metK PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 6.217e-27
Identity = 67/127 (52.76%), Postives = 85/127 (66.93%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGR--------DD--PDFTWE 591
            HGG AF GKDP KVDR+ AY  R  AK+IVA+GLA RC +QVSYAIGV +P S+ ++++GTGKI D +I+K+V+E  D RP  +T  LDL    +  + + AAYGHFGR        DD    FTWE
Sbjct:  259 HGGGAFSGKDPSKVDRSAAYAGRYVAKNIVAAGLAERCEIQVSYAIGVAQPTSISLNTFGTGKISDDKIIKLVREVFDLRPYAITTMLDLL---HPMYQETAAYGHFGRAPQTKTVGDDTFTTFTWE 382          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_PSE14 (S-adenosylmethionine synthetase OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=metK PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 6.217e-27
Identity = 63/128 (49.22%), Postives = 86/128 (67.19%), Query Frame = -2
Query:  214 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTW--EVVKPLKWEK 591
            HGG AF GKDP KVDR+ AY  R  AK+IVA+GLA RC +QVSYAIGV +P+S+ ++++GTGK+ D +I+K+V+++ D RP  +T  LDL    +  +   AAYGHFGR   + T   +      WEK
Sbjct:  259 HGGGAFSGKDPSKVDRSAAYAGRYVAKNIVAAGLAERCEIQVSYAIGVAQPMSISLNTFGTGKLSDDKIIKLVRDNFDLRPYAITTMLDLL---HPMYQATAAYGHFGRTPVEMTIGDDTFTAFTWEK 383          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_MESFL (S-adenosylmethionine synthetase OS=Mesoplasma florum GN=metK PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 6.217e-27
Identity = 62/123 (50.41%), Postives = 85/123 (69.11%), Query Frame = -2
Query:  223 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWEVVKPLK 591
            HGG AF GKD  KVDR+ AY+ R AAK++VASGLA +  +QVSYAIG PEP+S+F++++GT K+  + I K + E+ DF    +   LDL++     FLK A YGHFG+D  +FTWE +  +K
Sbjct:  256 HGGGAFSGKDATKVDRSAAYMARYAAKNLVASGLADKIEIQVSYAIGKPEPVSIFIETFGTEKVSKEVIAKALNENFDFSVNEIIKKLDLRK---PTFLKTATYGHFGKD--EFTWEQLDKVK 373          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_DESHD (S-adenosylmethionine synthetase OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=metK PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 6.217e-27
Identity = 59/117 (50.43%), Postives = 83/117 (70.94%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG AF GKDP KVDR+ AY  R  AK++VA+GLA RC +Q++YAIGV +P+S+ V+++GT KI +++I ++VK + D RP  +   L+L+R     + + AAYGHFGR D D  WE
Sbjct:  269 HGGGAFSGKDPTKVDRSAAYAARYVAKNVVAAGLAERCEIQLAYAIGVAQPVSVLVETFGTAKIDEEKIGELVKNNFDLRPAGIIKTLNLRR---PIYRQTAAYGHFGRTDLDLPWE 382          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_CLOBA (S-adenosylmethionine synthetase OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=metK PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 6.217e-27
Identity = 58/119 (48.74%), Postives = 86/119 (72.27%), Query Frame = -2
Query:  241 GAHGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 597
            G HGG AF GKD  KVDR+ AY  R  AK++VA+G+A +  +Q++YAIGV +P+S+ ++++GTGK+P+ +I++IV++  D RPG +  +LDL++     F + AAYGHFGR D D  WE
Sbjct:  264 GRHGGGAFSGKDSTKVDRSAAYAARWVAKNLVAAGIADKLEIQLAYAIGVAKPVSIEIETFGTGKMPEDKIVEIVEKVFDLRPGAIIRDLDLRK---PIFKQTAAYGHFGRTDLDLPWE 379          
The following BLAST results are available for this feature:
BLAST of CF834295 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK1_HUMAN4.760e-2751.61S-adenosylmethionine synthetase isoform type-1 OS=... [more]
METK_SHEAM6.217e-2752.14S-adenosylmethionine synthetase OS=Shewanella amaz... [more]
METK_SCHPO6.217e-2750.79S-adenosylmethionine synthetase OS=Schizosaccharom... [more]
METK_ROSS16.217e-2752.14S-adenosylmethionine synthetase OS=Roseiflexus sp.... [more]
METK_RHILO6.217e-2752.94S-adenosylmethionine synthetase OS=Rhizobium loti ... [more]
METK_PSEF56.217e-2752.76S-adenosylmethionine synthetase OS=Pseudomonas flu... [more]
METK_PSE146.217e-2749.22S-adenosylmethionine synthetase OS=Pseudomonas syr... [more]
METK_MESFL6.217e-2750.41S-adenosylmethionine synthetase OS=Mesoplasma flor... [more]
METK_DESHD6.217e-2750.43S-adenosylmethionine synthetase OS=Desulfitobacter... [more]
METK_CLOBA6.217e-2748.74S-adenosylmethionine synthetase OS=Clostridium bot... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05E14_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05E14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834295 ID=CF834295; Name=CF834295; organism=Citrus sinensis; type=EST; length=598bp
GGAACATTAAACCAAAACCAAAAAAGACCTCGGGGAAAGAAGAAAAAGAA
AGGAATTGAATGGGGAACATGTATGAGTTCCGAACACAGGAGATTTGCTT
AGTATTACAAAGCAGCAGCAAGATAATATTCAAATTATTCATCCACTACC
AATAGAAGCAAACTTGAACAGGAGGGATAGTTTGCACTTTTCAACTCAAA
TTTAAGCTTGAGGCTTTTCCCACTTGAGGGGCTTCACAACTTCCCAAGTG
AAGTCTGGGTCATCCCTGCCAAAGTGTCCATAGGCAGCAGGCTTCAAGAA
CCTGCCATTACCGCCCCTTTTGAGATCCAAATTGATGGTCATCATTCCTG
GCCTGAAATCAGAGCTTTCCTTCACAATTTTGAGGATCTCCTTGTCAGGA
ATCTTGCCGGTTCCATATGAGTCCACAAAAAGAGACAATGGCTCAGGCAC
ACCTATGGCATACGAGACTTGGACAATGCACCTGGGAGCAAGCCCGCTTG
CAACAATGCTCTTAGCAGCCTGCCTAACAATGTATGCACCAGTCCTATCC
ACCTTAGGAGGGTCTTTTCCAAAGAAAGCACAGCCACCATGGGCTCCC
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