CF834295

Overview
NameCF834295
Unique NameCF834295
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length598
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_SHESR (S-adenosylmethionine synthetase OS=Shewanella sp. (strain MR-7) GN=metK PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 8.120e-27
Identity = 62/117 (52.99%), Postives = 83/117 (70.94%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG AF GKDP KVDR+ AY  R  AK+IVA+GLA RC +QVSYAIGV EP S+ V+++GTGK+ ++ ++K+V++  D RP  +T  L+L R     +   AAYGHFGR+  +F WE
Sbjct:  258 HGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRCEIQVSYAIGVAEPTSISVETFGTGKVSEEVLIKLVRQHFDLRPYGLTEMLNLAR---PIYQATAAYGHFGRN--EFPWE 369          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_SHESM (S-adenosylmethionine synthetase OS=Shewanella sp. (strain MR-4) GN=metK PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 8.120e-27
Identity = 62/117 (52.99%), Postives = 83/117 (70.94%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG AF GKDP KVDR+ AY  R  AK+IVA+GLA RC +QVSYAIGV EP S+ V+++GTGK+ ++ ++K+V++  D RP  +T  L+L R     +   AAYGHFGR+  +F WE
Sbjct:  258 HGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRCEIQVSYAIGVAEPTSISVETFGTGKVSEEVLIKLVRQHFDLRPYGLTEMLNLAR---PIYQATAAYGHFGRN--EFPWE 369          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_SHESA (S-adenosylmethionine synthetase OS=Shewanella sp. (strain ANA-3) GN=metK PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 8.120e-27
Identity = 62/117 (52.99%), Postives = 83/117 (70.94%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG AF GKDP KVDR+ AY  R  AK+IVA+GLA RC +QVSYAIGV EP S+ V+++GTGK+ ++ ++K+V++  D RP  +T  L+L R     +   AAYGHFGR+  +F WE
Sbjct:  258 HGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRCEIQVSYAIGVAEPTSISVETFGTGKVSEEVLIKLVRQHFDLRPYGLTEMLNLAR---PIYQATAAYGHFGRN--EFPWE 369          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_PSEFS (S-adenosylmethionine synthetase OS=Pseudomonas fluorescens (strain SBW25) GN=metK PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 8.120e-27
Identity = 67/127 (52.76%), Postives = 85/127 (66.93%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGR--------DD--PDFTWE 591
            HGG AF GKDP KVDR+ AY  R  AK+IVA+GLA RC +QVSYAIGV +P S+ ++++GTGKI D +I+K+V+E  D RP  +T  LDL    +  + + AAYGHFGR        DD    FTWE
Sbjct:  259 HGGGAFSGKDPSKVDRSAAYAGRYVAKNIVAAGLAERCEIQVSYAIGVAQPTSISLNTFGTGKISDDKIVKLVREIFDLRPYAITTMLDLL---HPMYQETAAYGHFGRTPAQKTVGDDTFTTFTWE 382          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_CLOBB (S-adenosylmethionine synthetase OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=metK PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 8.120e-27
Identity = 58/119 (48.74%), Postives = 85/119 (71.43%), Query Frame = -2
Query:  241 GAHGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 597
            G HGG AF GKD  KVDR+ AY  R  AK++VA+G+A +  +Q++YAIGV +P+S+ ++++GTGK+P+ +I++IV+   D RPG +  +LDL++     F + AAYGHFGR D D  WE
Sbjct:  264 GRHGGGAFSGKDSTKVDRSAAYAARWVAKNLVAAGIADKLEIQLAYAIGVAKPVSIEIETFGTGKMPEDKIVEIVENVFDLRPGAIIRDLDLRK---PIFKQTAAYGHFGRTDLDLPWE 379          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_ALTMD (S-adenosylmethionine synthetase OS=Alteromonas macleodii (strain DSM 17117 / Deep ecotype) GN=metK PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 8.120e-27
Identity = 63/117 (53.85%), Postives = 81/117 (69.23%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG AF GKDP KVDR+ AY  R  AK+IVA+GLA RC +QVSYAIGV EP S+ +D++GTG + +K ++ +V+E  D RP  +   LDL+R     +   AAYGHFGRD  +F WE
Sbjct:  258 HGGGAFSGKDPSKVDRSAAYAGRYVAKNIVAAGLAKRCEIQVSYAIGVAEPTSISIDTFGTGVVDEKTLVALVREHFDLRPYGLIQMLDLER---PIYRPTAAYGHFGRD--EFPWE 369          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_ACAM1 (S-adenosylmethionine synthetase OS=Acaryochloris marina (strain MBIC 11017) GN=metK PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 8.120e-27
Identity = 62/121 (51.24%), Postives = 83/121 (68.60%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPG--MMTINLDLKRG-GNGRFLKP-AAYGHFGRDDPDFTWE 591
            HGG AF GKDP KVDR+ AY  R  AK+IVA+GLA +C VQ+SYAIGV  P+S+ ++++GTGK+ +  +L++V+E+ + RP   + T  L    G   GRF +  AAYGHFGR D D  WE
Sbjct:  278 HGGGAFSGKDPTKVDRSAAYACRYVAKNIVAAGLAEKCEVQLSYAIGVARPVSILIETFGTGKVDEDRLLQVVQENFELRPAGLIQTFGLTKLPGERGGRFYQDVAAYGHFGRTDLDLPWE 398          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK1_RAT (S-adenosylmethionine synthetase isoform type-1 OS=Rattus norvegicus GN=Mat1a PE=1 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 8.120e-27
Identity = 66/125 (52.80%), Postives = 86/125 (68.80%), Query Frame = -2
Query:  226 GAHGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDK-EILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWEVVKPL 597
            GAHGG AF GKD  KVDR+ AY  R  AKS+V +GL  R +VQVSYAIGV EPLS+ + +YGT K  ++ E+L++V ++ D RPG++  +LDLK+     + K A YGHFGR   +F WEV K L
Sbjct:  276 GAHGGGAFSGKDYTKVDRSAAYAARWVAKSLVKAGLCRRVLVQVSYAIGVAEPLSISIFTYGTSKKTERDELLEVVNKNFDLRPGVIVRDLDLKK---PIYQKTACYGHFGRS--EFPWEVPKKL 395          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_XANOR (S-adenosylmethionine synthetase OS=Xanthomonas oryzae pv. oryzae GN=metK PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.060e-26
Identity = 62/116 (53.45%), Postives = 81/116 (69.83%), Query Frame = -2
Query:  244 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTW 591
            HGG AF GKDP KVDR+ AY  R  AK++VA+GLA RC VQVSYAIGV EP S+ V ++GTGKI D++I K++++  D RP  +   LDL    +  + + A+YGHFGR   DFT+
Sbjct:  260 HGGGAFSGKDPSKVDRSAAYAARYVAKNVVAAGLADRCEVQVSYAIGVAEPTSISVTTFGTGKIADEQIEKLIRKHFDLRPFGIIQMLDLI---HPMYQQTASYGHFGRKPKDFTY 372          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_XANOP (S-adenosylmethionine synthetase OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=metK PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.060e-26
Identity = 62/116 (53.45%), Postives = 81/116 (69.83%), Query Frame = -2
Query:  244 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTW 591
            HGG AF GKDP KVDR+ AY  R  AK++VA+GLA RC VQVSYAIGV EP S+ V ++GTGKI D++I K++++  D RP  +   LDL    +  + + A+YGHFGR   DFT+
Sbjct:  260 HGGGAFSGKDPSKVDRSAAYAARYVAKNVVAAGLADRCEVQVSYAIGVAEPTSISVTTFGTGKIADEQIEKLIRKHFDLRPFGIIQMLDLI---HPMYQQTASYGHFGRKPKDFTY 372          
The following BLAST results are available for this feature:
BLAST of CF834295 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_SHESR8.120e-2752.99S-adenosylmethionine synthetase OS=Shewanella sp. ... [more]
METK_SHESM8.120e-2752.99S-adenosylmethionine synthetase OS=Shewanella sp. ... [more]
METK_SHESA8.120e-2752.99S-adenosylmethionine synthetase OS=Shewanella sp. ... [more]
METK_PSEFS8.120e-2752.76S-adenosylmethionine synthetase OS=Pseudomonas flu... [more]
METK_CLOBB8.120e-2748.74S-adenosylmethionine synthetase OS=Clostridium bot... [more]
METK_ALTMD8.120e-2753.85S-adenosylmethionine synthetase OS=Alteromonas mac... [more]
METK_ACAM18.120e-2751.24S-adenosylmethionine synthetase OS=Acaryochloris m... [more]
METK1_RAT8.120e-2752.80S-adenosylmethionine synthetase isoform type-1 OS=... [more]
METK_XANOR1.060e-2653.45S-adenosylmethionine synthetase OS=Xanthomonas ory... [more]
METK_XANOP1.060e-2653.45S-adenosylmethionine synthetase OS=Xanthomonas ory... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05E14_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05E14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834295 ID=CF834295; Name=CF834295; organism=Citrus sinensis; type=EST; length=598bp
GGAACATTAAACCAAAACCAAAAAAGACCTCGGGGAAAGAAGAAAAAGAA
AGGAATTGAATGGGGAACATGTATGAGTTCCGAACACAGGAGATTTGCTT
AGTATTACAAAGCAGCAGCAAGATAATATTCAAATTATTCATCCACTACC
AATAGAAGCAAACTTGAACAGGAGGGATAGTTTGCACTTTTCAACTCAAA
TTTAAGCTTGAGGCTTTTCCCACTTGAGGGGCTTCACAACTTCCCAAGTG
AAGTCTGGGTCATCCCTGCCAAAGTGTCCATAGGCAGCAGGCTTCAAGAA
CCTGCCATTACCGCCCCTTTTGAGATCCAAATTGATGGTCATCATTCCTG
GCCTGAAATCAGAGCTTTCCTTCACAATTTTGAGGATCTCCTTGTCAGGA
ATCTTGCCGGTTCCATATGAGTCCACAAAAAGAGACAATGGCTCAGGCAC
ACCTATGGCATACGAGACTTGGACAATGCACCTGGGAGCAAGCCCGCTTG
CAACAATGCTCTTAGCAGCCTGCCTAACAATGTATGCACCAGTCCTATCC
ACCTTAGGAGGGTCTTTTCCAAAGAAAGCACAGCCACCATGGGCTCCC
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