CF834295

Overview
NameCF834295
Unique NameCF834295
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length598
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_XANOM (S-adenosylmethionine synthetase OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=metK PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.060e-26
Identity = 62/116 (53.45%), Postives = 81/116 (69.83%), Query Frame = -2
Query:  244 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTW 591
            HGG AF GKDP KVDR+ AY  R  AK++VA+GLA RC VQVSYAIGV EP S+ V ++GTGKI D++I K++++  D RP  +   LDL    +  + + A+YGHFGR   DFT+
Sbjct:  260 HGGGAFSGKDPSKVDRSAAYAARYVAKNVVAAGLADRCEVQVSYAIGVAEPTSISVTTFGTGKIADEQIEKLIRKHFDLRPFGIIQMLDLI---HPMYQQTASYGHFGRKPKDFTY 372          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_XANC5 (S-adenosylmethionine synthetase OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=metK PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.060e-26
Identity = 62/116 (53.45%), Postives = 81/116 (69.83%), Query Frame = -2
Query:  244 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTW 591
            HGG AF GKDP KVDR+ AY  R  AK++VA+GLA RC VQVSYAIGV EP S+ V ++GTGKI D++I K++++  D RP  +   LDL    +  + + A+YGHFGR   DFT+
Sbjct:  260 HGGGAFSGKDPSKVDRSAAYAARYVAKNVVAAGLADRCEVQVSYAIGVAEPTSISVTTFGTGKIADEQIEKLIRKHFDLRPFGIIQMLDLI---HPMYQQTASYGHFGRKPKDFTY 372          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_XANAC (S-adenosylmethionine synthetase OS=Xanthomonas axonopodis pv. citri GN=metK PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.060e-26
Identity = 62/116 (53.45%), Postives = 81/116 (69.83%), Query Frame = -2
Query:  244 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTW 591
            HGG AF GKDP KVDR+ AY  R  AK++VA+GLA RC VQVSYAIGV EP S+ V ++GTGKI D++I K++++  D RP  +   LDL    +  + + A+YGHFGR   DFT+
Sbjct:  260 HGGGAFSGKDPSKVDRSAAYAARYVAKNVVAAGLADRCEVQVSYAIGVAEPTSISVTTFGTGKIADEQIEKLIRKHFDLRPFGIIQMLDLI---HPMYQQTASYGHFGRKPKDFTY 372          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_THICR (S-adenosylmethionine synthetase OS=Thiomicrospira crunogena (strain XCL-2) GN=metK PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.060e-26
Identity = 62/117 (52.99%), Postives = 80/117 (68.38%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG AF GKDP KVDR+ AY  R  AK+IVA+GLA +C +QVSYAIGV  P S+ ++++GT K+    I K+V+E  D RP  +   LDL R     + K A+YGHFGR+ P+FTWE
Sbjct:  258 HGGGAFSGKDPSKVDRSAAYAGRYVAKNIVAAGLADKCEIQVSYAIGVAAPTSISIETFGTEKVAVSLIEKLVREHFDLRPKGLIAMLDLYR---PIYQKTASYGHFGRELPEFTWE 371          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_THEAB (S-adenosylmethionine synthetase OS=Thermosipho africanus (strain TCF52B) GN=metK PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.060e-26
Identity = 59/117 (50.43%), Postives = 81/117 (69.23%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG AF GKDP KVDR+  Y  R  AK++VA+GLA + ++QV+YAIG  +P+S+ ++++GT K  + +ILK + E  DFRPG +   LDL R     + K AAYGHFGR+  +FTWE
Sbjct:  270 HGGGAFSGKDPTKVDRSAHYFARYVAKNVVAAGLADKFMIQVAYAIGKAQPVSVMINTFGTAKTDEDKILKAILEIFDFRPGAIIKKLDLLR---PIYKKTAAYGHFGRELEEFTWE 383          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_SYNP6 (S-adenosylmethionine synthetase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=metK PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.060e-26
Identity = 61/121 (50.41%), Postives = 84/121 (69.42%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKR---GGNGRFLKP-AAYGHFGRDDPDFTWE 591
            HGG AF GKDP KVDR+ AY  R  AK+IVA+GLA +C VQ+SYAIGV  P+S+ V+++GTGK+ D+ +L +V++  +  P  +  + +L+R      GRF +  AAYGHFGR+D D  WE
Sbjct:  268 HGGGAFSGKDPTKVDRSAAYACRYVAKNIVAAGLAEKCEVQLSYAIGVARPVSVLVETFGTGKVADEVLLDLVRKHFELHPAGIIEHFNLQRLPGERGGRFYQEVAAYGHFGRNDLDLPWE 388          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_SHEON (S-adenosylmethionine synthetase OS=Shewanella oneidensis GN=metK PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.060e-26
Identity = 62/117 (52.99%), Postives = 82/117 (70.09%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG AF GKDP KVDR+ AY  R  AK+IVA+GLA RC +QVSYAIGV EP S+ V+++GTGK+ ++ ++K+V++  D RP  +T  L+L R     +   AAYGHFGR   +F WE
Sbjct:  258 HGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRCEIQVSYAIGVAEPTSISVETFGTGKVSEEVLIKLVRQHFDLRPYGLTEMLNLAR---PIYQATAAYGHFGRS--EFPWE 369          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_SHEB9 (S-adenosylmethionine synthetase OS=Shewanella baltica (strain OS195) GN=metK PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.060e-26
Identity = 61/117 (52.14%), Postives = 82/117 (70.09%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG AF GKDP KVDR+ AY  R  AK+IVA+GLA RC +QVSYAIGV EP S+ ++++GTGK+ +  ++K+V++  + RP  +T  LDL R     +   AAYGHFGR+  +F WE
Sbjct:  258 HGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRCEIQVSYAIGVAEPTSISIETFGTGKVSEDLLIKLVRQHFELRPYGLTAMLDLAR---PIYQATAAYGHFGRN--EFPWE 369          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_SHEB8 (S-adenosylmethionine synthetase OS=Shewanella baltica (strain OS185) GN=metK PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.060e-26
Identity = 61/117 (52.14%), Postives = 82/117 (70.09%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG AF GKDP KVDR+ AY  R  AK+IVA+GLA RC +QVSYAIGV EP S+ ++++GTGK+ +  ++K+V++  + RP  +T  LDL R     +   AAYGHFGR+  +F WE
Sbjct:  258 HGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRCEIQVSYAIGVAEPTSISIETFGTGKVSEDLLIKLVRQHFELRPYGLTAMLDLAR---PIYQATAAYGHFGRN--EFPWE 369          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_SHEB5 (S-adenosylmethionine synthetase OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=metK PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.060e-26
Identity = 61/117 (52.14%), Postives = 82/117 (70.09%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG AF GKDP KVDR+ AY  R  AK+IVA+GLA RC +QVSYAIGV EP S+ ++++GTGK+ +  ++K+V++  + RP  +T  LDL R     +   AAYGHFGR+  +F WE
Sbjct:  258 HGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRCEIQVSYAIGVAEPTSISIETFGTGKVSEDLLIKLVRQHFELRPYGLTAMLDLAR---PIYQATAAYGHFGRN--EFPWE 369          
The following BLAST results are available for this feature:
BLAST of CF834295 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_XANOM1.060e-2653.45S-adenosylmethionine synthetase OS=Xanthomonas ory... [more]
METK_XANC51.060e-2653.45S-adenosylmethionine synthetase OS=Xanthomonas cam... [more]
METK_XANAC1.060e-2653.45S-adenosylmethionine synthetase OS=Xanthomonas axo... [more]
METK_THICR1.060e-2652.99S-adenosylmethionine synthetase OS=Thiomicrospira ... [more]
METK_THEAB1.060e-2650.43S-adenosylmethionine synthetase OS=Thermosipho afr... [more]
METK_SYNP61.060e-2650.41S-adenosylmethionine synthetase OS=Synechococcus s... [more]
METK_SHEON1.060e-2652.99S-adenosylmethionine synthetase OS=Shewanella onei... [more]
METK_SHEB91.060e-2652.14S-adenosylmethionine synthetase OS=Shewanella balt... [more]
METK_SHEB81.060e-2652.14S-adenosylmethionine synthetase OS=Shewanella balt... [more]
METK_SHEB51.060e-2652.14S-adenosylmethionine synthetase OS=Shewanella balt... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05E14_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05E14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834295 ID=CF834295; Name=CF834295; organism=Citrus sinensis; type=EST; length=598bp
GGAACATTAAACCAAAACCAAAAAAGACCTCGGGGAAAGAAGAAAAAGAA
AGGAATTGAATGGGGAACATGTATGAGTTCCGAACACAGGAGATTTGCTT
AGTATTACAAAGCAGCAGCAAGATAATATTCAAATTATTCATCCACTACC
AATAGAAGCAAACTTGAACAGGAGGGATAGTTTGCACTTTTCAACTCAAA
TTTAAGCTTGAGGCTTTTCCCACTTGAGGGGCTTCACAACTTCCCAAGTG
AAGTCTGGGTCATCCCTGCCAAAGTGTCCATAGGCAGCAGGCTTCAAGAA
CCTGCCATTACCGCCCCTTTTGAGATCCAAATTGATGGTCATCATTCCTG
GCCTGAAATCAGAGCTTTCCTTCACAATTTTGAGGATCTCCTTGTCAGGA
ATCTTGCCGGTTCCATATGAGTCCACAAAAAGAGACAATGGCTCAGGCAC
ACCTATGGCATACGAGACTTGGACAATGCACCTGGGAGCAAGCCCGCTTG
CAACAATGCTCTTAGCAGCCTGCCTAACAATGTATGCACCAGTCCTATCC
ACCTTAGGAGGGTCTTTTCCAAAGAAAGCACAGCCACCATGGGCTCCC
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