CF834295

Overview
NameCF834295
Unique NameCF834295
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length598
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_STAA8 (S-adenosylmethionine synthetase OS=Staphylococcus aureus (strain NCTC 8325) GN=metK PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.385e-26
Identity = 59/117 (50.43%), Postives = 82/117 (70.09%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG  F GKDP KVDR+ AY  R  AK+IVA+GLA +C VQ++YAIGV EP+S+ +D++GTGK+ + ++++ V++  D RP  +   LDLK+     + + AAYGHFGR D  F WE
Sbjct:  271 HGGGCFSGKDPTKVDRSAAYAARYVAKNIVAAGLADQCEVQLAYAIGVAEPVSIAIDTFGTGKVSEGQLVEAVRKHFDLRPAGIIKMLDLKQ---PIYKQTAAYGHFGRTDVLFPWE 384          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_STAA3 (S-adenosylmethionine synthetase OS=Staphylococcus aureus (strain USA300) GN=metK PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.385e-26
Identity = 59/117 (50.43%), Postives = 82/117 (70.09%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG  F GKDP KVDR+ AY  R  AK+IVA+GLA +C VQ++YAIGV EP+S+ +D++GTGK+ + ++++ V++  D RP  +   LDLK+     + + AAYGHFGR D  F WE
Sbjct:  271 HGGGCFSGKDPTKVDRSAAYAARYVAKNIVAAGLADQCEVQLAYAIGVAEPVSIAIDTFGTGKVSEGQLVEAVRKHFDLRPAGIIKMLDLKQ---PIYKQTAAYGHFGRTDVLFPWE 384          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_STAA2 (S-adenosylmethionine synthetase OS=Staphylococcus aureus (strain JH1) GN=metK PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.385e-26
Identity = 59/117 (50.43%), Postives = 82/117 (70.09%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG  F GKDP KVDR+ AY  R  AK+IVA+GLA +C VQ++YAIGV EP+S+ +D++GTGK+ + ++++ V++  D RP  +   LDLK+     + + AAYGHFGR D  F WE
Sbjct:  271 HGGGCFSGKDPTKVDRSAAYAARYVAKNIVAAGLADQCEVQLAYAIGVAEPVSIAIDTFGTGKVSEGQLVEAVRKHFDLRPAGIIKMLDLKQ---PIYKQTAAYGHFGRTDVLFPWE 384          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_STAA1 (S-adenosylmethionine synthetase OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=metK PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.385e-26
Identity = 59/117 (50.43%), Postives = 82/117 (70.09%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG  F GKDP KVDR+ AY  R  AK+IVA+GLA +C VQ++YAIGV EP+S+ +D++GTGK+ + ++++ V++  D RP  +   LDLK+     + + AAYGHFGR D  F WE
Sbjct:  271 HGGGCFSGKDPTKVDRSAAYAARYVAKNIVAAGLADQCEVQLAYAIGVAEPVSIAIDTFGTGKVSEGQLVEAVRKHFDLRPAGIIKMLDLKQ---PIYKQTAAYGHFGRTDVLFPWE 384          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_SHESH (S-adenosylmethionine synthetase OS=Shewanella sediminis (strain HAW-EB3) GN=metK PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.385e-26
Identity = 61/117 (52.14%), Postives = 82/117 (70.09%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG AF GKDP KVDR+ AY  R  AK+IVA+GLA RC +QVSYAIGV EP S+ ++++GTGK+ ++ ++ +V++  D RP  +T  LDL R     +   AAYGHFGR+  +F WE
Sbjct:  258 HGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRCELQVSYAIGVAEPTSISIETFGTGKVSEEALIALVRQHFDLRPYGLTEMLDLAR---PIYQSTAAYGHFGRN--EFPWE 369          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_SHELP (S-adenosylmethionine synthetase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=metK PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.385e-26
Identity = 62/117 (52.99%), Postives = 82/117 (70.09%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG AF GKDP KVDR+ AY  R  AK+IVA+GLA RC +QVSYAIGV EP S+ V+++GTGK+ ++ ++ +V++  D RP  +T  LDL R     +   AAYGHFGR+  +F WE
Sbjct:  258 HGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRCEIQVSYAIGVAEPTSISVETFGTGKVSEEVLIGLVRQHFDLRPYGLTEMLDLAR---PIYKATAAYGHFGRN--EFPWE 369          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_PSESM (S-adenosylmethionine synthetase OS=Pseudomonas syringae pv. tomato GN=metK PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.385e-26
Identity = 63/128 (49.22%), Postives = 85/128 (66.41%), Query Frame = -2
Query:  214 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTW--EVVKPLKWEK 591
            HGG AF GKDP KVDR+ AY  R  AK+IVA+GLA RC +QVSYAIGV +P S+ ++++GTGK+ D +I+K+V+++ D RP  +T  LDL    +  +   AAYGHFGR   + T   +      WEK
Sbjct:  259 HGGGAFSGKDPSKVDRSAAYAGRYVAKNIVAAGLAERCEIQVSYAIGVAQPTSISLNTFGTGKLSDDKIIKLVRDNFDLRPYAITTMLDLL---HPMYQATAAYGHFGRTPVEMTVGDDTFTAFTWEK 383          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_PROMT (S-adenosylmethionine synthetase OS=Prochlorococcus marinus (strain NATL2A) GN=metK PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.385e-26
Identity = 65/125 (52.00%), Postives = 84/125 (67.20%), Query Frame = -2
Query:  235 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLK-----RGGNGRFLK-PAAYGHFGRDDPDFTWEVV 591
            HGG AF GKDP KVDR+ AY  R  AK++VA+ LA +  VQ+SYAIGV +P+S+ VDS+GTGK+ D E+ ++V++  D RPG +    DL+     RG  GRF +  AAYGHFGR D    WE V
Sbjct:  276 HGGGAFSGKDPTKVDRSAAYAARFVAKALVAANLAKKVEVQLSYAIGVAKPISILVDSFGTGKVSDSELTQLVQDQFDLRPGAIIKAFDLQNLPSIRG--GRFYRDTAAYGHFGRTDILLPWEDV 398          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_PROM1 (S-adenosylmethionine synthetase OS=Prochlorococcus marinus (strain NATL1A) GN=metK PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.385e-26
Identity = 65/125 (52.00%), Postives = 84/125 (67.20%), Query Frame = -2
Query:  235 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLK-----RGGNGRFLK-PAAYGHFGRDDPDFTWEVV 591
            HGG AF GKDP KVDR+ AY  R  AK++VA+ LA +  VQ+SYAIGV +P+S+ VDS+GTGK+ D E+ ++V++  D RPG +    DL+     RG  GRF +  AAYGHFGR D    WE V
Sbjct:  276 HGGGAFSGKDPTKVDRSAAYAARFVAKALVAANLAKKVEVQLSYAIGVAKPISILVDSFGTGKVSDSELTQLVQDQFDLRPGAIIKAFDLQNLPSVRG--GRFYRDTAAYGHFGRTDILLPWEDV 398          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_CLOTE (S-adenosylmethionine synthetase OS=Clostridium tetani GN=metK PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.385e-26
Identity = 58/125 (46.40%), Postives = 87/125 (69.60%), Query Frame = -2
Query:  223 GAHGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWEVVKPLK 597
            G HGG AF GKDP KVDR+ AY  R  AK++VA+G+A +  VQ++YAIG+ +P+S+ V+++GTGKI D++I++I+ +  D RP  +   L+L+R     + + AAYGHFGR D +  WE +  L+
Sbjct:  264 GRHGGGAFSGKDPTKVDRSAAYAARWVAKNLVAAGVADKLEVQLAYAIGIAKPVSISVETFGTGKIDDRKIVEIINKVFDLRPSAIIKELNLRR---PIYKQTAAYGHFGRTDVELPWESLNKLE 385          
The following BLAST results are available for this feature:
BLAST of CF834295 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_STAA81.385e-2650.43S-adenosylmethionine synthetase OS=Staphylococcus ... [more]
METK_STAA31.385e-2650.43S-adenosylmethionine synthetase OS=Staphylococcus ... [more]
METK_STAA21.385e-2650.43S-adenosylmethionine synthetase OS=Staphylococcus ... [more]
METK_STAA11.385e-2650.43S-adenosylmethionine synthetase OS=Staphylococcus ... [more]
METK_SHESH1.385e-2652.14S-adenosylmethionine synthetase OS=Shewanella sedi... [more]
METK_SHELP1.385e-2652.99S-adenosylmethionine synthetase OS=Shewanella loih... [more]
METK_PSESM1.385e-2649.22S-adenosylmethionine synthetase OS=Pseudomonas syr... [more]
METK_PROMT1.385e-2652.00S-adenosylmethionine synthetase OS=Prochlorococcus... [more]
METK_PROM11.385e-2652.00S-adenosylmethionine synthetase OS=Prochlorococcus... [more]
METK_CLOTE1.385e-2646.40S-adenosylmethionine synthetase OS=Clostridium tet... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05E14_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05E14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834295 ID=CF834295; Name=CF834295; organism=Citrus sinensis; type=EST; length=598bp
GGAACATTAAACCAAAACCAAAAAAGACCTCGGGGAAAGAAGAAAAAGAA
AGGAATTGAATGGGGAACATGTATGAGTTCCGAACACAGGAGATTTGCTT
AGTATTACAAAGCAGCAGCAAGATAATATTCAAATTATTCATCCACTACC
AATAGAAGCAAACTTGAACAGGAGGGATAGTTTGCACTTTTCAACTCAAA
TTTAAGCTTGAGGCTTTTCCCACTTGAGGGGCTTCACAACTTCCCAAGTG
AAGTCTGGGTCATCCCTGCCAAAGTGTCCATAGGCAGCAGGCTTCAAGAA
CCTGCCATTACCGCCCCTTTTGAGATCCAAATTGATGGTCATCATTCCTG
GCCTGAAATCAGAGCTTTCCTTCACAATTTTGAGGATCTCCTTGTCAGGA
ATCTTGCCGGTTCCATATGAGTCCACAAAAAGAGACAATGGCTCAGGCAC
ACCTATGGCATACGAGACTTGGACAATGCACCTGGGAGCAAGCCCGCTTG
CAACAATGCTCTTAGCAGCCTGCCTAACAATGTATGCACCAGTCCTATCC
ACCTTAGGAGGGTCTTTTCCAAAGAAAGCACAGCCACCATGGGCTCCC
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