CF834295

Overview
NameCF834295
Unique NameCF834295
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length598
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_BRAJA (S-adenosylmethionine synthetase OS=Bradyrhizobium japonicum GN=metK PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.385e-26
Identity = 58/120 (48.33%), Postives = 84/120 (70.00%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGR---DDPDFTWE 591
            HGG AF GKDP KVDR+ AY  R  AK+IVA+GLA RC +Q++YAIGV  PLS+++D++GTGK+P++++ K   ++ D  P  +  +LDL R     + + +AYGHFGR   ++  F+WE
Sbjct:  270 HGGGAFSGKDPTKVDRSAAYAARYVAKNIVAAGLADRCTLQLAYAIGVARPLSIYIDTHGTGKVPEEQLEKAAAQAMDLTPRGIRSHLDLNR---PIYARTSAYGHFGRTPDNEGGFSWE 386          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_SYNPW (S-adenosylmethionine synthetase OS=Synechococcus sp. (strain WH7803) GN=metK PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.809e-26
Identity = 62/124 (50.00%), Postives = 82/124 (66.13%), Query Frame = -2
Query:  232 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRG---GNGRFLK-PAAYGHFGRDDPDFTWEVVK 591
            HGG AF GKDP KVDR+ AY  R  AK +VA+GLA R  VQ+SYAIGV +P+S+ V+S+GTGK+ + E+ ++V++  D RPG +     L+       GRF +  AAYGHFGR D    WE V+
Sbjct:  276 HGGGAFSGKDPTKVDRSAAYAARYVAKCLVAAGLAQRAEVQLSYAIGVAKPVSILVESFGTGKVSNAELTELVQQHFDLRPGAIIQQFKLREMPALSGGRFYRDTAAYGHFGRPDLKLPWEDVE 399          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_SHESW (S-adenosylmethionine synthetase OS=Shewanella sp. (strain W3-18-1) GN=metK PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.809e-26
Identity = 61/117 (52.14%), Postives = 83/117 (70.94%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG AF GKDP KVDR+ AY  R  AK+IVA+GLA RC +QVSYAIGV EP S+ ++++GTGK+ ++ ++K+V++  D RP  +T  L+L R     +   AAYGHFGR+  +F WE
Sbjct:  258 HGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRCELQVSYAIGVAEPTSISIETFGTGKVSEEVLIKLVRQHFDLRPYGLTEMLNLAR---PIYQATAAYGHFGRN--EFPWE 369          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_SHEPC (S-adenosylmethionine synthetase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=metK PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.809e-26
Identity = 61/117 (52.14%), Postives = 83/117 (70.94%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG AF GKDP KVDR+ AY  R  AK+IVA+GLA RC +QVSYAIGV EP S+ ++++GTGK+ ++ ++K+V++  D RP  +T  L+L R     +   AAYGHFGR+  +F WE
Sbjct:  258 HGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRCELQVSYAIGVAEPTSISIETFGTGKVSEEVLIKLVRQHFDLRPYGLTEMLNLAR---PIYQATAAYGHFGRN--EFPWE 369          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_PSEPW (S-adenosylmethionine synthetase OS=Pseudomonas putida (strain W619) GN=metK PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.809e-26
Identity = 65/127 (51.18%), Postives = 85/127 (66.93%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGR--------DD--PDFTWE 591
            HGG AF GKDP KVDR+ AY  R  AK+IVA+GLA RC +QVSYAIGV +P S+ ++++GTGK+ D +I+++V+E  D RP  +T  LDL    +  + + AAYGHFGR        DD    FTWE
Sbjct:  259 HGGGAFSGKDPSKVDRSAAYAGRYVAKNIVAAGLAERCEIQVSYAIGVAQPTSISINTFGTGKVSDDKIIQLVRECFDLRPYAITKMLDLL---HPMYQETAAYGHFGRTPQQKTVGDDTFTTFTWE 382          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_PSEPF (S-adenosylmethionine synthetase OS=Pseudomonas fluorescens (strain Pf0-1) GN=metK PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.809e-26
Identity = 65/127 (51.18%), Postives = 83/127 (65.35%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDD----------PDFTWE 591
            HGG AF GKDP KVDR+ AY  R  AK+IVA+GLA RC +QVSYAIGV +P S+ ++++GTGKI D +I+K+V+E  D RP  +T  LDL    +  + + AAYGHFGR              FTWE
Sbjct:  259 HGGGAFSGKDPSKVDRSAAYAGRYVAKNIVAAGLAERCEIQVSYAIGVAQPTSISLNTFGTGKISDDKIIKLVREVFDLRPYAITTMLDLL---HPMYQETAAYGHFGRAPQTKTVGEDTFSTFTWE 382          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_COLP3 (S-adenosylmethionine synthetase OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=metK PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.809e-26
Identity = 63/128 (49.22%), Postives = 85/128 (66.41%), Query Frame = -2
Query:  214 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTW--EVVKPLKWEK 591
            HGG AF GKDP KVDR+ AY  R  AK+IVA+GLA RC +Q+SYAIGV EP S+ +D++GTG I ++ +++IV+E  D RP  +T  LDL    +  + + AAYGHFGR+  + T   +      WEK
Sbjct:  258 HGGGAFSGKDPSKVDRSAAYAGRYVAKNIVAAGLADRCEIQISYAIGVAEPTSISIDTFGTGSISEERLVEIVREHFDLRPYGITKMLDLL---HPMYQQTAAYGHFGREPFEMTVGDDTFTAFSWEK 382          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_SYNS3 (S-adenosylmethionine synthetase OS=Synechococcus sp. (strain CC9311) GN=metK PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.362e-26
Identity = 62/123 (50.41%), Postives = 82/123 (66.67%), Query Frame = -2
Query:  235 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRG---GNGRFLK-PAAYGHFGRDDPDFTWEVV 591
            HGG AF GKDP KVDR+ AY  R  AK++VA+GLA R  VQ+SYAIGV +P+S+ V+S+G+GK+ + E+  +V+E  D RPG +     L+       GRF +  AAYGHFGR D +  WE V
Sbjct:  276 HGGGAFSGKDPTKVDRSAAYAARYVAKALVAAGLANRAEVQLSYAIGVAKPVSILVESFGSGKVSNAELTDLVQEHFDLRPGAIIEQFKLREMPSLNGGRFYRDTAAYGHFGRPDLNLPWEDV 398          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_PSEU2 (S-adenosylmethionine synthetase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=metK PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.362e-26
Identity = 65/127 (51.18%), Postives = 85/127 (66.93%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGR--------DD--PDFTWE 591
            HGG AF GKDP KVDR+ AY  R  AK+IVA+GLA RC +QVSYAIGV +P S+ ++++GTGK+ D +I+K+V+++ D RP  +T  LDL    +  +   AAYGHFGR        DD    FTWE
Sbjct:  259 HGGGAFSGKDPSKVDRSAAYAGRYVAKNIVAAGLAERCEIQVSYAIGVAQPTSISLNTFGTGKLSDDKIIKLVRDNFDLRPYAITTMLDLL---HPMYQATAAYGHFGRIPVEMTVGDDTFTAFTWE 382          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_PSEE4 (S-adenosylmethionine synthetase OS=Pseudomonas entomophila (strain L48) GN=metK PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.362e-26
Identity = 65/127 (51.18%), Postives = 85/127 (66.93%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGR--------DD--PDFTWE 591
            HGG AF GKDP KVDR+ AY  R  AK+IVA+GLA RC +QVSYAIGV +P S+ ++++GTGK+ D +I+++V+E  D RP  +T  LDL    +  + + AAYGHFGR        DD    FTWE
Sbjct:  259 HGGGAFSGKDPSKVDRSAAYAGRYVAKNIVAAGLAERCEIQVSYAIGVAQPTSISINTFGTGKVSDDKIVQLVRECFDLRPYAITKMLDLL---HPMYQETAAYGHFGRTPQQKTVGDDTFTTFTWE 382          
The following BLAST results are available for this feature:
BLAST of CF834295 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_BRAJA1.385e-2648.33S-adenosylmethionine synthetase OS=Bradyrhizobium ... [more]
METK_SYNPW1.809e-2650.00S-adenosylmethionine synthetase OS=Synechococcus s... [more]
METK_SHESW1.809e-2652.14S-adenosylmethionine synthetase OS=Shewanella sp. ... [more]
METK_SHEPC1.809e-2652.14S-adenosylmethionine synthetase OS=Shewanella putr... [more]
METK_PSEPW1.809e-2651.18S-adenosylmethionine synthetase OS=Pseudomonas put... [more]
METK_PSEPF1.809e-2651.18S-adenosylmethionine synthetase OS=Pseudomonas flu... [more]
METK_COLP31.809e-2649.22S-adenosylmethionine synthetase OS=Colwellia psych... [more]
METK_SYNS32.362e-2650.41S-adenosylmethionine synthetase OS=Synechococcus s... [more]
METK_PSEU22.362e-2651.18S-adenosylmethionine synthetase OS=Pseudomonas syr... [more]
METK_PSEE42.362e-2651.18S-adenosylmethionine synthetase OS=Pseudomonas ent... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05E14_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05E14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834295 ID=CF834295; Name=CF834295; organism=Citrus sinensis; type=EST; length=598bp
GGAACATTAAACCAAAACCAAAAAAGACCTCGGGGAAAGAAGAAAAAGAA
AGGAATTGAATGGGGAACATGTATGAGTTCCGAACACAGGAGATTTGCTT
AGTATTACAAAGCAGCAGCAAGATAATATTCAAATTATTCATCCACTACC
AATAGAAGCAAACTTGAACAGGAGGGATAGTTTGCACTTTTCAACTCAAA
TTTAAGCTTGAGGCTTTTCCCACTTGAGGGGCTTCACAACTTCCCAAGTG
AAGTCTGGGTCATCCCTGCCAAAGTGTCCATAGGCAGCAGGCTTCAAGAA
CCTGCCATTACCGCCCCTTTTGAGATCCAAATTGATGGTCATCATTCCTG
GCCTGAAATCAGAGCTTTCCTTCACAATTTTGAGGATCTCCTTGTCAGGA
ATCTTGCCGGTTCCATATGAGTCCACAAAAAGAGACAATGGCTCAGGCAC
ACCTATGGCATACGAGACTTGGACAATGCACCTGGGAGCAAGCCCGCTTG
CAACAATGCTCTTAGCAGCCTGCCTAACAATGTATGCACCAGTCCTATCC
ACCTTAGGAGGGTCTTTTCCAAAGAAAGCACAGCCACCATGGGCTCCC
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