CF834295

Overview
NameCF834295
Unique NameCF834295
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length598
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_SALDC (S-adenosylmethionine synthetase OS=Salmonella dublin (strain CT_02021853) GN=metK PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.030e-26
Identity = 61/119 (51.26%), Postives = 83/119 (69.75%), Query Frame = -2
Query:  235 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWEVV 591
            HGG AF GKDP KVDR+ AY  R  AK+IVA+GLA RC +QVSYAIGV EP S+ V+++GT K+P ++++ +V+E  D RP  +   LDL    +  + + AAYGHFGR+  +F WE +
Sbjct:  258 HGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRCEIQVSYAIGVAEPTSIMVETFGTEKVPAEQLILLVREFFDLRPYGLIQMLDLL---HPIYKETAAYGHFGRE--NFPWEKI 371          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_PSEHT (S-adenosylmethionine synthetase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=metK PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.030e-26
Identity = 59/117 (50.43%), Postives = 82/117 (70.09%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG AF GKDP KVDR+ AY  R  AK+IVA+GLA +C +QVSYAIG+ EP S+ V+++GT K+ +  ++++++E  D RP  +   LDL+R     +L  AAYGHFGR+  +F WE
Sbjct:  258 HGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADKCELQVSYAIGIAEPTSISVETFGTSKLEESRLIELIREHFDLRPYGLIKMLDLER---PIYLPTAAYGHFGRE--EFPWE 369          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_NITHX (S-adenosylmethionine synthetase OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=metK PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.030e-26
Identity = 59/120 (49.17%), Postives = 83/120 (69.17%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGR---DDPDFTWE 591
            HGG AF GKDP KVDR+ AY  R  AK+IVA+GLA RC +Q++YAIGV  PLS+++D++GTGK P+  + +IV E+ D  P  +  +LDL R     + + ++YGHFGR   ++  F+WE
Sbjct:  270 HGGGAFSGKDPTKVDRSAAYAARYLAKNIVAAGLADRCTLQLAYAIGVARPLSIYIDTHGTGKAPEDTLERIVSEAMDLTPRGIRKHLDLNR---PIYARTSSYGHFGRTPDNEGGFSWE 386          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_FINM2 (S-adenosylmethionine synthetase OS=Finegoldia magna (strain ATCC 29328) GN=metK PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.030e-26
Identity = 56/117 (47.86%), Postives = 82/117 (70.09%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG AF GKDP K DR+ AY  R  AK++VA+GL  +C V  SYAIGV +P+S+F++++GT KI +++I++ + E+ D RP  +   LDL+R     + + A+YGHFGR+D D +WE
Sbjct:  267 HGGGAFSGKDPTKTDRSAAYFARYIAKNVVAAGLCDKCEVGFSYAIGVAKPISMFINTFGTNKIEEEKIIQAINENFDARPKAIIDKLDLQR---PIYREVASYGHFGRNDLDLSWE 380          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_CORK4 (S-adenosylmethionine synthetase OS=Corynebacterium kroppenstedtii (strain DSM 44385 / CCUG 35717) GN=metK PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.030e-26
Identity = 62/117 (52.99%), Postives = 78/117 (66.67%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG AF GKDP KVDR+ AY +R  AK+IVA+GLA RC VQV+YAIG   P+ L+V+++GT K P   I + V++  D RP  +   LDLKR     + + AAYGHFGR D D  WE
Sbjct:  273 HGGGAFSGKDPSKVDRSAAYAMRWVAKNIVAAGLADRCEVQVAYAIGRANPVGLYVETFGTEKEPISAIQEAVQKVFDLRPAAIIRELDLKR---PIYAQTAAYGHFGRTDLDLPWE 386          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_ACTSZ (S-adenosylmethionine synthetase OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=metK PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.030e-26
Identity = 61/119 (51.26%), Postives = 83/119 (69.75%), Query Frame = -2
Query:  235 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWEVV 591
            HGG AF GKDP KVDR+ AY  R  AK+IVA+GLA RC +Q+SYAIGV EP S+ ++++GTGK+ ++ ++K+V+E  D RP  +   LDL R     + + AAYGHFGR+   F WE +
Sbjct:  258 HGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRCEIQLSYAIGVAEPTSIMLETFGTGKVANELLVKLVREFFDLRPYGLIQMLDLIR---PIYRETAAYGHFGRE--QFPWEKI 371          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_SALTY (S-adenosylmethionine synthetase OS=Salmonella typhimurium GN=metK PE=3 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 5.263e-26
Identity = 61/117 (52.14%), Postives = 82/117 (70.09%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG AF GKDP KVDR+ AY  R  AK+IVA+GLA RC +QVSYAIGV EP S+ V+++GT K+P ++++ +V+E  D RP  +   LDL    +  + + AAYGHFGR+  +F WE
Sbjct:  258 HGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRCEIQVSYAIGVAEPTSIMVETFGTEKVPAEQLILLVREFFDLRPYGLIQMLDLL---HPIYKETAAYGHFGRE--NFPWE 369          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_SALTI (S-adenosylmethionine synthetase OS=Salmonella typhi GN=metK PE=3 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 5.263e-26
Identity = 61/117 (52.14%), Postives = 82/117 (70.09%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG AF GKDP KVDR+ AY  R  AK+IVA+GLA RC +QVSYAIGV EP S+ V+++GT K+P ++++ +V+E  D RP  +   LDL    +  + + AAYGHFGR+  +F WE
Sbjct:  258 HGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRCEIQVSYAIGVAEPTSIMVETFGTEKVPAEQLILLVREFFDLRPYGLIQMLDLL---HPIYKETAAYGHFGRE--NFPWE 369          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_SALSV (S-adenosylmethionine synthetase OS=Salmonella schwarzengrund (strain CVM19633) GN=metK PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 5.263e-26
Identity = 61/117 (52.14%), Postives = 82/117 (70.09%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG AF GKDP KVDR+ AY  R  AK+IVA+GLA RC +QVSYAIGV EP S+ V+++GT K+P ++++ +V+E  D RP  +   LDL    +  + + AAYGHFGR+  +F WE
Sbjct:  258 HGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRCEIQVSYAIGVAEPTSIMVETFGTEKVPAEQLILLVREFFDLRPYGLIQMLDLL---HPIYKETAAYGHFGRE--NFPWE 369          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_SALPK (S-adenosylmethionine synthetase OS=Salmonella paratyphi A (strain AKU_12601) GN=metK PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 5.263e-26
Identity = 61/117 (52.14%), Postives = 82/117 (70.09%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG AF GKDP KVDR+ AY  R  AK+IVA+GLA RC +QVSYAIGV EP S+ V+++GT K+P ++++ +V+E  D RP  +   LDL    +  + + AAYGHFGR+  +F WE
Sbjct:  258 HGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRCEIQVSYAIGVAEPTSIMVETFGTEKVPAEQLILLVREFFDLRPYGLIQMLDLL---HPIYKETAAYGHFGRE--NFPWE 369          
The following BLAST results are available for this feature:
BLAST of CF834295 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_SALDC4.030e-2651.26S-adenosylmethionine synthetase OS=Salmonella dubl... [more]
METK_PSEHT4.030e-2650.43S-adenosylmethionine synthetase OS=Pseudoalteromon... [more]
METK_NITHX4.030e-2649.17S-adenosylmethionine synthetase OS=Nitrobacter ham... [more]
METK_FINM24.030e-2647.86S-adenosylmethionine synthetase OS=Finegoldia magn... [more]
METK_CORK44.030e-2652.99S-adenosylmethionine synthetase OS=Corynebacterium... [more]
METK_ACTSZ4.030e-2651.26S-adenosylmethionine synthetase OS=Actinobacillus ... [more]
METK_SALTY5.263e-2652.14S-adenosylmethionine synthetase OS=Salmonella typh... [more]
METK_SALTI5.263e-2652.14S-adenosylmethionine synthetase OS=Salmonella typh... [more]
METK_SALSV5.263e-2652.14S-adenosylmethionine synthetase OS=Salmonella schw... [more]
METK_SALPK5.263e-2652.14S-adenosylmethionine synthetase OS=Salmonella para... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05E14_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05E14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834295 ID=CF834295; Name=CF834295; organism=Citrus sinensis; type=EST; length=598bp
GGAACATTAAACCAAAACCAAAAAAGACCTCGGGGAAAGAAGAAAAAGAA
AGGAATTGAATGGGGAACATGTATGAGTTCCGAACACAGGAGATTTGCTT
AGTATTACAAAGCAGCAGCAAGATAATATTCAAATTATTCATCCACTACC
AATAGAAGCAAACTTGAACAGGAGGGATAGTTTGCACTTTTCAACTCAAA
TTTAAGCTTGAGGCTTTTCCCACTTGAGGGGCTTCACAACTTCCCAAGTG
AAGTCTGGGTCATCCCTGCCAAAGTGTCCATAGGCAGCAGGCTTCAAGAA
CCTGCCATTACCGCCCCTTTTGAGATCCAAATTGATGGTCATCATTCCTG
GCCTGAAATCAGAGCTTTCCTTCACAATTTTGAGGATCTCCTTGTCAGGA
ATCTTGCCGGTTCCATATGAGTCCACAAAAAGAGACAATGGCTCAGGCAC
ACCTATGGCATACGAGACTTGGACAATGCACCTGGGAGCAAGCCCGCTTG
CAACAATGCTCTTAGCAGCCTGCCTAACAATGTATGCACCAGTCCTATCC
ACCTTAGGAGGGTCTTTTCCAAAGAAAGCACAGCCACCATGGGCTCCC
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