CF834295

Overview
NameCF834295
Unique NameCF834295
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length598
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_BACWK (S-adenosylmethionine synthetase OS=Bacillus weihenstephanensis (strain KBAB4) GN=metK PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 5.263e-26
Identity = 62/129 (48.06%), Postives = 84/129 (65.12%), Query Frame = -2
Query:  205 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWEVVKPLKWEKPQA 591
            HGG AF GKD  KVDR+ AY  R  AK+IVA+GLA +  VQ++YAIGV +P+S+ VD+ GTGK+ +  ++++V+ + D RP  +   LDL+R     + + AAYGHFGR D D TWE        K QA
Sbjct:  272 HGGGAFSGKDATKVDRSAAYAARYVAKNIVAAGLADKAEVQLAYAIGVAQPVSISVDTLGTGKVSEDVLVELVRNNFDLRPAGIIKMLDLRR---PIYKQTAAYGHFGRTDVDLTWERTDKAATLKEQA 397          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_BACLD (S-adenosylmethionine synthetase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=metK PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 5.263e-26
Identity = 58/117 (49.57%), Postives = 82/117 (70.09%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG AF GKD  KVDR+ AY  R  AK+IVA+GLA  C VQ++YAIGV +P+S+ +D++GTGK  ++ ++++V+++ D RP  +   LDL+R     + + AAYGHFGR D D  WE
Sbjct:  272 HGGGAFSGKDATKVDRSAAYAARYVAKNIVAAGLADSCEVQLAYAIGVAQPVSISIDTFGTGKASEETLIEVVRKNFDLRPAGIIKMLDLRR---PIYKQTAAYGHFGRLDLDLPWE 385          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_WOLSU (S-adenosylmethionine synthetase OS=Wolinella succinogenes GN=metK PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 6.874e-26
Identity = 57/117 (48.72%), Postives = 81/117 (69.23%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG AF GKDP KVDR+GAY  R  AK++VASG+  +  +Q++YAIGV EP+S+ VD++GTGK+ D ++   V++     P  +  +LDL R     + K A+YGHFGR+ P+F+WE
Sbjct:  258 HGGGAFSGKDPSKVDRSGAYAARYVAKNLVASGVCDKATIQIAYAIGVVEPVSILVDTHGTGKVEDDQLETCVRQLFRLTPKGIIESLDLLR---PIYKKTASYGHFGRELPEFSWE 371          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_STRM5 (S-adenosylmethionine synthetase OS=Stenotrophomonas maltophilia (strain R551-3) GN=metK PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 6.874e-26
Identity = 61/116 (52.59%), Postives = 80/116 (68.97%), Query Frame = -2
Query:  244 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTW 591
            HGG AF GKDP KVDR+ AY  R  AK++VA+GLA RC VQVSYAIGV EP S+ V ++GTGKI D +I K++++  D RP  +   LDL    +  + + AAYGHFGR   +F++
Sbjct:  260 HGGGAFSGKDPSKVDRSAAYAARYVAKNVVAAGLADRCEVQVSYAIGVAEPTSISVTTFGTGKISDDKIEKLIRKHFDLRPYGIIKMLDLV---HPMYQQTAAYGHFGRKPKEFSY 372          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_SALHS (S-adenosylmethionine synthetase OS=Salmonella heidelberg (strain SL476) GN=metK PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 6.874e-26
Identity = 61/117 (52.14%), Postives = 82/117 (70.09%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG AF GKDP KVDR+ AY  R  AK+IVA+GLA RC +QVSYAIGV EP S+ V+++GT K+P ++++ +V+E  D RP  +   LDL    +  + + AAYGHFGR+  +F WE
Sbjct:  258 HGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRCEIQVSYAIGVAEPTSIMVETFGTEKVPVEQLILLVREFFDLRPYGLIQMLDLL---HPIYKETAAYGHFGRE--NFPWE 369          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_PROMA (S-adenosylmethionine synthetase OS=Prochlorococcus marinus GN=metK PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 6.874e-26
Identity = 62/124 (50.00%), Postives = 84/124 (67.74%), Query Frame = -2
Query:  232 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGN---GRFLKP-AAYGHFGRDDPDFTWEVVK 591
            HGG AF GKDP KVDR+ AY  R  AKS+VA+GLA R  VQ+SYAIGV  P+S+ V+++G+GK+ ++ + ++V E+ D RPG +     L+   N   GRF +  AAYGHFGR D +  WE V+
Sbjct:  276 HGGGAFSGKDPTKVDRSAAYAARFVAKSLVAAGLASRVEVQLSYAIGVANPVSILVEAFGSGKMSNEALTELVTENFDLRPGAIIEQFGLRSLPNQRQGRFYRDVAAYGHFGRPDLNLPWEDVQ 399          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_HYPNA (S-adenosylmethionine synthetase OS=Hyphomonas neptunium (strain ATCC 15444) GN=metK PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 6.874e-26
Identity = 63/120 (52.50%), Postives = 79/120 (65.83%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGR---DDPDFTWE 591
            HGG AF GKDP KVDR+ AY  R  AK+IVA+GLA RC +QVSYAIGV +PLS++VD++GTG+  +  I K V+E  D  P  +  +L L    N  +   AAYGHFGR   +   FTWE
Sbjct:  264 HGGGAFSGKDPSKVDRSAAYATRYLAKNIVAAGLATRCTIQVSYAIGVAQPLSIYVDTHGTGQADEARIAKAVRELFDLSPKGIRTHLKL---SNPIYGPTAAYGHFGRIPGEGGTFTWE 380          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_BACCZ (S-adenosylmethionine synthetase OS=Bacillus cereus (strain ZK / E33L) GN=metK PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 6.874e-26
Identity = 58/117 (49.57%), Postives = 82/117 (70.09%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG AF GKD  KVDR+ AY  R  AK+IVA+GLA +  VQ++YAIGV +P+S+ VD++GTGK+ +  ++++V+ + D RP  +   LDL+R     + + AAYGHFGR D D +WE
Sbjct:  272 HGGGAFSGKDATKVDRSAAYAARYVAKNIVAAGLAEKAEVQLAYAIGVAQPVSISVDTFGTGKVSEDVLVELVRNNFDLRPAGIIKMLDLRR---PIYKQTAAYGHFGRTDVDLSWE 385          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_BACCR (S-adenosylmethionine synthetase OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=metK PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 6.874e-26
Identity = 58/117 (49.57%), Postives = 82/117 (70.09%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG AF GKD  KVDR+ AY  R  AK+IVA+GLA +  VQ++YAIGV +P+S+ VD++GTGK+ +  ++++V+ + D RP  +   LDL+R     + + AAYGHFGR D D +WE
Sbjct:  272 HGGGAFSGKDATKVDRSAAYAARYVAKNIVAAGLAEKAEVQLAYAIGVAQPVSISVDTFGTGKVSEDVLVELVRNNFDLRPAGIIKMLDLRR---PIYKQTAAYGHFGRTDVDLSWE 385          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_BACCQ (S-adenosylmethionine synthetase OS=Bacillus cereus (strain Q1) GN=metK PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 6.874e-26
Identity = 58/117 (49.57%), Postives = 82/117 (70.09%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG AF GKD  KVDR+ AY  R  AK+IVA+GLA +  VQ++YAIGV +P+S+ VD++GTGK+ +  ++++V+ + D RP  +   LDL+R     + + AAYGHFGR D D +WE
Sbjct:  272 HGGGAFSGKDATKVDRSAAYAARYVAKNIVAAGLAEKAEVQLAYAIGVAQPVSISVDTFGTGKVSEDVLVELVRNNFDLRPAGIIKMLDLRR---PIYKQTAAYGHFGRTDVDLSWE 385          
The following BLAST results are available for this feature:
BLAST of CF834295 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_BACWK5.263e-2648.06S-adenosylmethionine synthetase OS=Bacillus weihen... [more]
METK_BACLD5.263e-2649.57S-adenosylmethionine synthetase OS=Bacillus lichen... [more]
METK_WOLSU6.874e-2648.72S-adenosylmethionine synthetase OS=Wolinella succi... [more]
METK_STRM56.874e-2652.59S-adenosylmethionine synthetase OS=Stenotrophomona... [more]
METK_SALHS6.874e-2652.14S-adenosylmethionine synthetase OS=Salmonella heid... [more]
METK_PROMA6.874e-2650.00S-adenosylmethionine synthetase OS=Prochlorococcus... [more]
METK_HYPNA6.874e-2652.50S-adenosylmethionine synthetase OS=Hyphomonas nept... [more]
METK_BACCZ6.874e-2649.57S-adenosylmethionine synthetase OS=Bacillus cereus... [more]
METK_BACCR6.874e-2649.57S-adenosylmethionine synthetase OS=Bacillus cereus... [more]
METK_BACCQ6.874e-2649.57S-adenosylmethionine synthetase OS=Bacillus cereus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05E14_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05E14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834295 ID=CF834295; Name=CF834295; organism=Citrus sinensis; type=EST; length=598bp
GGAACATTAAACCAAAACCAAAAAAGACCTCGGGGAAAGAAGAAAAAGAA
AGGAATTGAATGGGGAACATGTATGAGTTCCGAACACAGGAGATTTGCTT
AGTATTACAAAGCAGCAGCAAGATAATATTCAAATTATTCATCCACTACC
AATAGAAGCAAACTTGAACAGGAGGGATAGTTTGCACTTTTCAACTCAAA
TTTAAGCTTGAGGCTTTTCCCACTTGAGGGGCTTCACAACTTCCCAAGTG
AAGTCTGGGTCATCCCTGCCAAAGTGTCCATAGGCAGCAGGCTTCAAGAA
CCTGCCATTACCGCCCCTTTTGAGATCCAAATTGATGGTCATCATTCCTG
GCCTGAAATCAGAGCTTTCCTTCACAATTTTGAGGATCTCCTTGTCAGGA
ATCTTGCCGGTTCCATATGAGTCCACAAAAAGAGACAATGGCTCAGGCAC
ACCTATGGCATACGAGACTTGGACAATGCACCTGGGAGCAAGCCCGCTTG
CAACAATGCTCTTAGCAGCCTGCCTAACAATGTATGCACCAGTCCTATCC
ACCTTAGGAGGGTCTTTTCCAAAGAAAGCACAGCCACCATGGGCTCCC
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