CF834295

Overview
NameCF834295
Unique NameCF834295
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length598
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_ALCBS (S-adenosylmethionine synthetase OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=metK PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 6.874e-26
Identity = 62/117 (52.99%), Postives = 81/117 (69.23%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG AF GKDP KVDR+ AY  R  AK+IVA+GLA +C +QVSYAIGV EP S+ V+++GTGKI D  I+ +V+E  D RP  +   LDL++     +   A+YGHFGR+   F+WE
Sbjct:  259 HGGGAFSGKDPSKVDRSAAYAGRYVAKNIVAAGLASKCEIQVSYAIGVAEPTSISVNTFGTGKISDSAIVDLVREHFDLRPRGIIEMLDLRK---PIYRPTASYGHFGRE--GFSWE 370          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_STRMK (S-adenosylmethionine synthetase OS=Stenotrophomonas maltophilia (strain K279a) GN=metK PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 8.977e-26
Identity = 61/116 (52.59%), Postives = 80/116 (68.97%), Query Frame = -2
Query:  244 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTW 591
            HGG AF GKDP KVDR+ AY  R  AK++VA+GLA RC VQVSYAIGV EP S+ V ++GTGKI D +I K++++  D RP  +   LDL    +  + + AAYGHFGR   +F++
Sbjct:  260 HGGGAFSGKDPSKVDRSAAYAARYVAKNVVAAGLADRCEVQVSYAIGVAEPTSISVTTFGTGKISDDKIEKLIRKHFDLRPYGIIKMLDLI---HPMYQQTAAYGHFGRKPKEFSY 372          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_PROMM (S-adenosylmethionine synthetase OS=Prochlorococcus marinus (strain MIT 9313) GN=metK PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 8.977e-26
Identity = 62/123 (50.41%), Postives = 81/123 (65.85%), Query Frame = -2
Query:  235 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLK---RGGNGRFLK-PAAYGHFGRDDPDFTWEVV 591
            HGG AF GKDP KVDR+ AY  R  AK +VA+GLA R  VQ+SYAIGV +P+S+ V+S+GTGK+ + E+  +V++  D RPG +     L+   +   GRF +  AAYGHFGR D    WE V
Sbjct:  276 HGGGAFSGKDPTKVDRSAAYAARFVAKCLVAAGLAQRAEVQLSYAIGVAKPVSILVESFGTGKVTNDELTALVQDHFDLRPGAIIEQFKLRQLPQQRGGRFYQDTAAYGHFGRPDLKLPWEDV 398          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_NOSP7 (S-adenosylmethionine synthetase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=metK PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 8.977e-26
Identity = 61/121 (50.41%), Postives = 82/121 (67.77%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPG--MMTINL-DLKRGGNGRFLKP-AAYGHFGRDDPDFTWE 591
            HGG AF GKDP KVDR+ AY  R  AK+IVA+GLA +  +Q+SYAIGV  P S+ VD++GTGK+ ++ +L+++ +  + RP   + T NL +L     GRF +  AAYGHFGR D D  WE
Sbjct:  279 HGGGAFSGKDPTKVDRSAAYAARYVAKNIVAAGLAEKVEIQLSYAIGVARPTSILVDTFGTGKVDEETLLELINQHFELRPAGIIHTFNLRNLPSERGGRFYQDVAAYGHFGRADLDLPWE 399          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_LACAC (S-adenosylmethionine synthetase OS=Lactobacillus acidophilus GN=metK PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 8.977e-26
Identity = 63/129 (48.84%), Postives = 83/129 (64.34%), Query Frame = -2
Query:  205 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWEVVKPLKWEKPQA 591
            HGG AF GKDP KVDR+ +Y  R  AK+IVA+GLA RC VQ++YAIGV  P+S+ +D+ GTG + D+ + + V+   D RP  +   LDL+R     + + AAYGHFGR D D  WE     K +K QA
Sbjct:  270 HGGGAFSGKDPTKVDRSASYAARYVAKNIVAAGLAYRCEVQLAYAIGVAHPVSIMIDTAGTGTVDDELLTEAVRNVFDLRPAGIIKMLDLRR---PIYEQTAAYGHFGRTDVDLPWE-----KTDKTQA 390          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_HAEPS (S-adenosylmethionine synthetase OS=Haemophilus parasuis serovar 5 (strain SH0165) GN=metK PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 8.977e-26
Identity = 60/117 (51.28%), Postives = 81/117 (69.23%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG AF GKDP KVDR+ AY  R  AK+IVA+GLA RC +Q+SYAIG+ EP S+ V+++GTGK+ ++  +++V+E  D RP  +   LDL R     + + AAYGHFGR+   F WE
Sbjct:  258 HGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRCEIQLSYAIGIAEPTSIMVETFGTGKVSNEVFVRLVREHFDLRPYGLIKMLDLIR---PIYRETAAYGHFGRE--HFPWE 369          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_DEIDV (S-adenosylmethionine synthetase OS=Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) GN=metK PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 8.977e-26
Identity = 61/117 (52.14%), Postives = 80/117 (68.38%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG AF GKDP KVDR+ AY  R  AK+IVA+GLA R +V+V+YAIG   P+SL VD+YGTG + D+ + ++V+   D RP  +   LDL+R     + + AAYGHFGR  P+F WE
Sbjct:  278 HGGGAFSGKDPTKVDRSAAYYARYIAKNIVAAGLARRALVEVAYAIGRAHPVSLRVDTYGTGTVSDERLAQLVEAHFDARPQAIIAQLDLQR---PIYAQTAAYGHFGR--PEFPWE 389          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_BACCN (S-adenosylmethionine synthetase OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=metK PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 8.977e-26
Identity = 58/117 (49.57%), Postives = 82/117 (70.09%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG AF GKD  KVDR+ AY  R  AK+IVA+GLA +  VQ++YAIGV +P+S+ VD++GTGK+ ++ ++++V+ + D RP  +   LDL+R     + + AAYGHFGR D D  WE
Sbjct:  272 HGGGAFSGKDATKVDRSAAYAARYVAKNIVAAGLAEKAEVQLAYAIGVAKPVSISVDTFGTGKVSEEVLVELVRNNFDLRPAGIIKMLDLRR---PIYKQTAAYGHFGRTDVDLPWE 385          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_ACIBY (S-adenosylmethionine synthetase OS=Acinetobacter baumannii (strain AYE) GN=metK PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 8.977e-26
Identity = 61/119 (51.26%), Postives = 84/119 (70.59%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPD--FTWE 591
            HGG AF GKDP KVDR+ AY  R  AK+IVA+GLA +C +QVSYAIGV EP S+ ++++GT K+ D+ I+++V+E  D RP  +T  L+L +     + + AAYGHFGR+  +  FTWE
Sbjct:  259 HGGGAFSGKDPSKVDRSAAYAGRYVAKNIVAAGLADKCEIQVSYAIGVAEPTSISINTFGTAKVSDELIIQLVREHFDLRPFGITRMLNLIQ---PMYKQTAAYGHFGREGSNTAFTWE 374          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_SHISS (S-adenosylmethionine synthetase OS=Shigella sonnei (strain Ss046) GN=metK PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.172e-25
Identity = 61/117 (52.14%), Postives = 80/117 (68.38%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG AF GKDP KVDR+ AY  R  AK+IVA+GLA RC +QVSYAIGV EP S+ V+++GT K+P +++  +V+E  D RP  +   LDL    +  + + AAYGHFGR+   F WE
Sbjct:  258 HGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRCEIQVSYAIGVAEPTSIMVETFGTEKVPSEQLTLLVREFFDLRPYGLIQMLDLL---HPIYKETAAYGHFGRE--HFPWE 369          
The following BLAST results are available for this feature:
BLAST of CF834295 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_ALCBS6.874e-2652.99S-adenosylmethionine synthetase OS=Alcanivorax bor... [more]
METK_STRMK8.977e-2652.59S-adenosylmethionine synthetase OS=Stenotrophomona... [more]
METK_PROMM8.977e-2650.41S-adenosylmethionine synthetase OS=Prochlorococcus... [more]
METK_NOSP78.977e-2650.41S-adenosylmethionine synthetase OS=Nostoc punctifo... [more]
METK_LACAC8.977e-2648.84S-adenosylmethionine synthetase OS=Lactobacillus a... [more]
METK_HAEPS8.977e-2651.28S-adenosylmethionine synthetase OS=Haemophilus par... [more]
METK_DEIDV8.977e-2652.14S-adenosylmethionine synthetase OS=Deinococcus des... [more]
METK_BACCN8.977e-2649.57S-adenosylmethionine synthetase OS=Bacillus cereus... [more]
METK_ACIBY8.977e-2651.26S-adenosylmethionine synthetase OS=Acinetobacter b... [more]
METK_SHISS1.172e-2552.14S-adenosylmethionine synthetase OS=Shigella sonnei... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05E14_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05E14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834295 ID=CF834295; Name=CF834295; organism=Citrus sinensis; type=EST; length=598bp
GGAACATTAAACCAAAACCAAAAAAGACCTCGGGGAAAGAAGAAAAAGAA
AGGAATTGAATGGGGAACATGTATGAGTTCCGAACACAGGAGATTTGCTT
AGTATTACAAAGCAGCAGCAAGATAATATTCAAATTATTCATCCACTACC
AATAGAAGCAAACTTGAACAGGAGGGATAGTTTGCACTTTTCAACTCAAA
TTTAAGCTTGAGGCTTTTCCCACTTGAGGGGCTTCACAACTTCCCAAGTG
AAGTCTGGGTCATCCCTGCCAAAGTGTCCATAGGCAGCAGGCTTCAAGAA
CCTGCCATTACCGCCCCTTTTGAGATCCAAATTGATGGTCATCATTCCTG
GCCTGAAATCAGAGCTTTCCTTCACAATTTTGAGGATCTCCTTGTCAGGA
ATCTTGCCGGTTCCATATGAGTCCACAAAAAGAGACAATGGCTCAGGCAC
ACCTATGGCATACGAGACTTGGACAATGCACCTGGGAGCAAGCCCGCTTG
CAACAATGCTCTTAGCAGCCTGCCTAACAATGTATGCACCAGTCCTATCC
ACCTTAGGAGGGTCTTTTCCAAAGAAAGCACAGCCACCATGGGCTCCC
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