CF834295

Overview
NameCF834295
Unique NameCF834295
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length598
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_CITK8 (S-adenosylmethionine synthetase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=metK PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.172e-25
Identity = 61/117 (52.14%), Postives = 80/117 (68.38%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG AF GKDP KVDR+ AY  R  AK+IVA+GLA RC +QVSYAIGV EP S+ V+++GT K+P +++  +V+E  D RP  +   LDL    +  + + AAYGHFGR+   F WE
Sbjct:  258 HGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRCEIQVSYAIGVAEPTSIMVETFGTEKVPSEQLTLLVREFFDLRPYGLIQMLDLL---HPIYKETAAYGHFGRE--HFPWE 369          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_BIFA0 (S-adenosylmethionine synthetase OS=Bifidobacterium animalis subsp. lactis (strain AD011) GN=metK PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.172e-25
Identity = 63/119 (52.94%), Postives = 81/119 (68.07%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGT--GKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG AF GKDP KVDR+ AY  R  AK+IVA+GLA +  VQV+YAIGV EP+S+ V++YGT    +  ++I + V++  D RP  +   LDL R     + K AAYGHFGR+D DFTWE
Sbjct:  276 HGGGAFSGKDPSKVDRSAAYAARWVAKNIVAAGLAHKVEVQVAYAIGVAEPVSINVETYGTEADGVTREQIQEAVRKVFDLRPAAIVDELDLLR---PIYSKTAAYGHFGREDDDFTWE 391          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_ACIAD (S-adenosylmethionine synthetase OS=Acinetobacter sp. (strain ADP1) GN=metK PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.172e-25
Identity = 61/119 (51.26%), Postives = 82/119 (68.91%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPD--FTWE 591
            HGG AF GKDP KVDR+ AY  R  AK+IVA+GLA +C +QVSYAIGV EP S+ ++++ T K+ ++ I+ +V+E  D RP  +T  LDL +     + + AAYGHFGR+  D  FTWE
Sbjct:  259 HGGGAFSGKDPSKVDRSAAYAGRYVAKNIVAAGLADKCEIQVSYAIGVAEPTSISINTFNTAKVDEELIIALVREHFDLRPYGITRMLDLLQ---PMYKQTAAYGHFGREGSDTAFTWE 374          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_PSYCK (S-adenosylmethionine synthetase OS=Psychrobacter cryohalolentis (strain K5) GN=metK PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.531e-25
Identity = 63/131 (48.09%), Postives = 85/131 (64.89%), Query Frame = -2
Query:  205 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPD--FTWEVVKPLKWEKPQA 591
            HGG AF GKDP KVDR+ AY VR  AK+IVA+G+A RC VQVSYAIGV EP S+ ++++GT KI + EI+ +++   D RP  +T  L+L +     + + A++GHFGR   +  FTWE     K  K  A
Sbjct:  259 HGGGAFSGKDPSKVDRSAAYAVRYVAKNIVAAGIADRCEVQVSYAIGVAEPTSISINTFGTNKISNDEIISLIRTHFDLRPYGITRMLNLLQ---PMYQQTASFGHFGRQGSETAFTWEKTDKAKILKADA 386          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_PSEU5 (S-adenosylmethionine synthetase OS=Pseudomonas stutzeri (strain A1501) GN=metK PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.531e-25
Identity = 63/128 (49.22%), Postives = 83/128 (64.84%), Query Frame = -2
Query:  214 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFT--WEVVKPLKWEK 591
            HGG AF GKDP KVDR+ AY  R  AK+IVA+GLA RC +QVSYAIGV +P S+ ++++GTGK+ D +I+ +V+E  D RP  +T  LDL    +  +   AAYGHFGR   + T   +      WEK
Sbjct:  259 HGGGAFSGKDPSKVDRSAAYAGRYVAKNIVAAGLADRCEIQVSYAIGVAQPTSISLNTFGTGKLGDDKIIALVREHFDLRPYAITRMLDLL---HPMYRATAAYGHFGRTPYEMTVGADTFTAFTWEK 383          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_MYCA1 (S-adenosylmethionine synthetase OS=Mycobacterium avium (strain 104) GN=metK PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.531e-25
Identity = 61/117 (52.14%), Postives = 78/117 (66.67%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG AF GKDP KVDR+ AY +R  AK+IVA+GLA R  VQV+YAIG   P+ LF++++GT  +   +I KIV E  D RPG +  +LDL R     + + AAYGHFGR D +  WE
Sbjct:  278 HGGGAFSGKDPSKVDRSAAYAMRWVAKNIVAAGLAERVEVQVAYAIGKAAPVGLFIETFGTATVDPVKIEKIVPEVFDLRPGAIIRDLDLLR---PIYAQTAAYGHFGRTDVELPWE 391          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_LISMH (S-adenosylmethionine synthetase OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=metK PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.531e-25
Identity = 60/117 (51.28%), Postives = 78/117 (66.67%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG AF GKDP KVDR+GAY  R  AK+IVA+GLA +  VQV+YAIGV  P+S+ +D+YGT    ++E++  V E  D RP  +   LDL+R     + + AA+GHFGR D D  WE
Sbjct:  272 HGGGAFSGKDPTKVDRSGAYAARYVAKNIVAAGLAKKVEVQVAYAIGVARPVSISIDTYGTSDYSEQELIDGVNELFDLRPAGIIHMLDLRR---PIYRQTAAFGHFGRSDLDLPWE 385          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_LISMF (S-adenosylmethionine synthetase OS=Listeria monocytogenes serotype 4b (strain F2365) GN=metK PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.531e-25
Identity = 60/117 (51.28%), Postives = 78/117 (66.67%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG AF GKDP KVDR+GAY  R  AK+IVA+GLA +  VQV+YAIGV  P+S+ +D+YGT    ++E++  V E  D RP  +   LDL+R     + + AA+GHFGR D D  WE
Sbjct:  272 HGGGAFSGKDPTKVDRSGAYAARYVAKNIVAAGLAKKVEVQVAYAIGVARPVSISIDTYGTSDYSEQELIDGVNELFDLRPAGIIHMLDLRR---PIYRQTAAFGHFGRSDLDLPWE 385          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_LISMC (S-adenosylmethionine synthetase OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=metK PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.531e-25
Identity = 60/117 (51.28%), Postives = 78/117 (66.67%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG AF GKDP KVDR+GAY  R  AK+IVA+GLA +  VQV+YAIGV  P+S+ +D+YGT    ++E++  V E  D RP  +   LDL+R     + + AA+GHFGR D D  WE
Sbjct:  272 HGGGAFSGKDPTKVDRSGAYAARYVAKNIVAAGLAKKVEVQVAYAIGVARPVSISIDTYGTSDYSEQELIDGVNELFDLRPAGIIHMLDLRR---PIYRQTAAFGHFGRSDLDLPWE 385          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_LISIN (S-adenosylmethionine synthetase OS=Listeria innocua GN=metK PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.531e-25
Identity = 60/117 (51.28%), Postives = 78/117 (66.67%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG AF GKDP KVDR+GAY  R  AK+IVA+GLA +  VQV+YAIGV  P+S+ +D+YGT    ++E++  V E  D RP  +   LDL+R     + + AA+GHFGR D D  WE
Sbjct:  272 HGGGAFSGKDPTKVDRSGAYAARYVAKNIVAAGLAKKVEVQVAYAIGVARPVSISIDTYGTSDYSEQELIDGVNELFDLRPAGIIHMLDLRR---PIYRQTAAFGHFGRSDLDLPWE 385          
The following BLAST results are available for this feature:
BLAST of CF834295 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_CITK81.172e-2552.14S-adenosylmethionine synthetase OS=Citrobacter kos... [more]
METK_BIFA01.172e-2552.94S-adenosylmethionine synthetase OS=Bifidobacterium... [more]
METK_ACIAD1.172e-2551.26S-adenosylmethionine synthetase OS=Acinetobacter s... [more]
METK_PSYCK1.531e-2548.09S-adenosylmethionine synthetase OS=Psychrobacter c... [more]
METK_PSEU51.531e-2549.22S-adenosylmethionine synthetase OS=Pseudomonas stu... [more]
METK_MYCA11.531e-2552.14S-adenosylmethionine synthetase OS=Mycobacterium a... [more]
METK_LISMH1.531e-2551.28S-adenosylmethionine synthetase OS=Listeria monocy... [more]
METK_LISMF1.531e-2551.28S-adenosylmethionine synthetase OS=Listeria monocy... [more]
METK_LISMC1.531e-2551.28S-adenosylmethionine synthetase OS=Listeria monocy... [more]
METK_LISIN1.531e-2551.28S-adenosylmethionine synthetase OS=Listeria innocu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05E14_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05E14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834295 ID=CF834295; Name=CF834295; organism=Citrus sinensis; type=EST; length=598bp
GGAACATTAAACCAAAACCAAAAAAGACCTCGGGGAAAGAAGAAAAAGAA
AGGAATTGAATGGGGAACATGTATGAGTTCCGAACACAGGAGATTTGCTT
AGTATTACAAAGCAGCAGCAAGATAATATTCAAATTATTCATCCACTACC
AATAGAAGCAAACTTGAACAGGAGGGATAGTTTGCACTTTTCAACTCAAA
TTTAAGCTTGAGGCTTTTCCCACTTGAGGGGCTTCACAACTTCCCAAGTG
AAGTCTGGGTCATCCCTGCCAAAGTGTCCATAGGCAGCAGGCTTCAAGAA
CCTGCCATTACCGCCCCTTTTGAGATCCAAATTGATGGTCATCATTCCTG
GCCTGAAATCAGAGCTTTCCTTCACAATTTTGAGGATCTCCTTGTCAGGA
ATCTTGCCGGTTCCATATGAGTCCACAAAAAGAGACAATGGCTCAGGCAC
ACCTATGGCATACGAGACTTGGACAATGCACCTGGGAGCAAGCCCGCTTG
CAACAATGCTCTTAGCAGCCTGCCTAACAATGTATGCACCAGTCCTATCC
ACCTTAGGAGGGTCTTTTCCAAAGAAAGCACAGCCACCATGGGCTCCC
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