CF834295

Overview
NameCF834295
Unique NameCF834295
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length598
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_DEIGD (S-adenosylmethionine synthetase OS=Deinococcus geothermalis (strain DSM 11300) GN=metK PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.531e-25
Identity = 61/117 (52.14%), Postives = 79/117 (67.52%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG AF GKDP KVDR+ AY  R  AK+IVA+GLA R +V+V+YAIG   P+SL VD+YGTG + D+ +  +V+   D RP  +   LDL+R     + + AAYGHFGR  P+F WE
Sbjct:  278 HGGGAFSGKDPTKVDRSAAYYARYIAKNIVAAGLARRALVEVAYAIGRAHPVSLRVDTYGTGTLSDERLADLVRAHFDARPQAIIAELDLQR---PIYAQTAAYGHFGR--PEFPWE 389          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_BUCAP (S-adenosylmethionine synthetase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=metK PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.531e-25
Identity = 59/117 (50.43%), Postives = 79/117 (67.52%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG AF GKDP KVDR+ AY  R  AK+IVA+GLA RC +Q+SYAIG+ EP S+ ++++ TGKI +K ++ +V+   D RP  +   LDL R     +L  A YGHFGR+  +F WE
Sbjct:  258 HGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRCEIQLSYAIGIAEPTSIMIETFRTGKISNKSLINLVRNIFDLRPYGLIEMLDLLR---PIYLNTAVYGHFGRE--EFPWE 369          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_ACTPJ (S-adenosylmethionine synthetase OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=metK PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.531e-25
Identity = 59/117 (50.43%), Postives = 82/117 (70.09%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG AF GKDP KVDR+ AY  R  AK+IVA+GLA RC +Q+SYAIGV +P S+ V+++GTGK+ ++ ++K++ ++ D RP  +   LDL R     + + AAYGHFGR+   F WE
Sbjct:  258 HGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRCEIQLSYAIGVADPTSIMVETFGTGKVSNETLVKLIYQNFDLRPYGLIKMLDLIR---PIYRETAAYGHFGRE--HFPWE 369          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_ACTP7 (S-adenosylmethionine synthetase OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=metK PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.531e-25
Identity = 59/117 (50.43%), Postives = 82/117 (70.09%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG AF GKDP KVDR+ AY  R  AK+IVA+GLA RC +Q+SYAIGV +P S+ V+++GTGK+ ++ ++K++ ++ D RP  +   LDL R     + + AAYGHFGR+   F WE
Sbjct:  258 HGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRCEIQLSYAIGVADPTSIMVETFGTGKVSNETLVKLIYQNFDLRPYGLIKMLDLIR---PIYRETAAYGHFGRE--HFPWE 369          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_XYLFT (S-adenosylmethionine synthetase OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=metK PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.000e-25
Identity = 64/133 (48.12%), Postives = 83/133 (62.41%), Query Frame = -2
Query:  214 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE-------VVKPLKWEK 591
            HGG AF GKDP KVDR+ +Y VR  AK++VA+GLA RC VQVSYAIGV EP+S+ V ++GTGKIPD +I K++ +  D RP  +   LDL    +  +   A+YGHFGR   +  +        V     WEK
Sbjct:  260 HGGGAFSGKDPSKVDRSASYAVRYVAKNVVAAGLADRCEVQVSYAIGVAEPISISVTTFGTGKIPDDKIEKLICQHFDLRPYGIIKMLDLI---HPIYQPSASYGHFGRKPRELAYTNSNGERVVATAFSWEK 389          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_XYLF2 (S-adenosylmethionine synthetase OS=Xylella fastidiosa (strain M23) GN=metK PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.000e-25
Identity = 64/133 (48.12%), Postives = 83/133 (62.41%), Query Frame = -2
Query:  214 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE-------VVKPLKWEK 591
            HGG AF GKDP KVDR+ +Y VR  AK++VA+GLA RC VQVSYAIGV EP+S+ V ++GTGKIPD +I K++ +  D RP  +   LDL    +  +   A+YGHFGR   +  +        V     WEK
Sbjct:  260 HGGGAFSGKDPSKVDRSASYAVRYVAKNVVAAGLADRCEVQVSYAIGVAEPISISVTTFGTGKIPDDKIEKLICQHFDLRPYGIIKMLDLI---HPIYQPSASYGHFGRKPRELAYTNSNGERVVATAFSWEK 389          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_THEFY (S-adenosylmethionine synthetase OS=Thermobifida fusca (strain YX) GN=metK PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.000e-25
Identity = 59/117 (50.43%), Postives = 79/117 (67.52%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG AF GKDP KVDR+ AY  R  AK+IVA+GLA R  VQV+YAIG   P+ +F++++GT K+  +++ K V E  D RP  +  +LDL R     + + + YGHFGR+ PDFTWE
Sbjct:  270 HGGGAFSGKDPSKVDRSAAYATRWVAKNIVAAGLADRVEVQVAYAIGKAHPVGVFLETFGTEKVAPEQLEKAVLEVFDLRPAAIIRDLDLLR---PIYSQTSVYGHFGRELPDFTWE 383          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_SYNP2 (S-adenosylmethionine synthetase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=metK PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.000e-25
Identity = 59/121 (48.76%), Postives = 81/121 (66.94%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKR---GGNGRFLKP-AAYGHFGRDDPDFTWE 591
            HGG AF GKDP KVDR+ +Y  R  AK+IVA+GLA +C VQVSYAIGV  P+S+ ++++GT  + +  +L++V++  + RP  +    DL+      NGRF +  AAYGHFGR D D  WE
Sbjct:  279 HGGGAFSGKDPTKVDRSASYACRYVAKNIVAAGLAEKCEVQVSYAIGVARPVSVMIETFGTCTVDEDRLLEVVQKHFELRPAGIIQAFDLRNLPSQRNGRFYQDMAAYGHFGRTDLDLPWE 399          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_STAS1 (S-adenosylmethionine synthetase OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=metK PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.000e-25
Identity = 58/117 (49.57%), Postives = 80/117 (68.38%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG  F GKDP KVDR+ AY  R  AK+IVA+ LA +C VQ++YAIGV EP+S+ +D++GTGK+ + E+++ V++  D RP  +   LDLK   +  + + AAYGHFGR D    WE
Sbjct:  271 HGGGCFSGKDPTKVDRSAAYAARYVAKNIVAAQLAEKCEVQLAYAIGVAEPVSISIDTFGTGKVSEYELVEAVRKHFDLRPAGIIKMLDLK---HPIYKQTAAYGHFGRTDVLLPWE 384          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_SERP5 (S-adenosylmethionine synthetase OS=Serratia proteamaculans (strain 568) GN=metK PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.000e-25
Identity = 61/117 (52.14%), Postives = 80/117 (68.38%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG AF GKDP KVDR+ AY  R  AK+IVA+GLA RC +QVSYAIGV EP S+ V+++GT KIP +++  +V+E  D RP  +   +DL +     + + AAYGHFGR+   F WE
Sbjct:  258 HGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRCEIQVSYAIGVAEPTSIMVETFGTEKIPTEQLTLLVREFFDLRPYGLIQMMDLLQ---PIYRETAAYGHFGRE--HFPWE 369          
The following BLAST results are available for this feature:
BLAST of CF834295 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_DEIGD1.531e-2552.14S-adenosylmethionine synthetase OS=Deinococcus geo... [more]
METK_BUCAP1.531e-2550.43S-adenosylmethionine synthetase OS=Buchnera aphidi... [more]
METK_ACTPJ1.531e-2550.43S-adenosylmethionine synthetase OS=Actinobacillus ... [more]
METK_ACTP71.531e-2550.43S-adenosylmethionine synthetase OS=Actinobacillus ... [more]
METK_XYLFT2.000e-2548.12S-adenosylmethionine synthetase OS=Xylella fastidi... [more]
METK_XYLF22.000e-2548.12S-adenosylmethionine synthetase OS=Xylella fastidi... [more]
METK_THEFY2.000e-2550.43S-adenosylmethionine synthetase OS=Thermobifida fu... [more]
METK_SYNP22.000e-2548.76S-adenosylmethionine synthetase OS=Synechococcus s... [more]
METK_STAS12.000e-2549.57S-adenosylmethionine synthetase OS=Staphylococcus ... [more]
METK_SERP52.000e-2552.14S-adenosylmethionine synthetase OS=Serratia protea... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05E14_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05E14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834295 ID=CF834295; Name=CF834295; organism=Citrus sinensis; type=EST; length=598bp
GGAACATTAAACCAAAACCAAAAAAGACCTCGGGGAAAGAAGAAAAAGAA
AGGAATTGAATGGGGAACATGTATGAGTTCCGAACACAGGAGATTTGCTT
AGTATTACAAAGCAGCAGCAAGATAATATTCAAATTATTCATCCACTACC
AATAGAAGCAAACTTGAACAGGAGGGATAGTTTGCACTTTTCAACTCAAA
TTTAAGCTTGAGGCTTTTCCCACTTGAGGGGCTTCACAACTTCCCAAGTG
AAGTCTGGGTCATCCCTGCCAAAGTGTCCATAGGCAGCAGGCTTCAAGAA
CCTGCCATTACCGCCCCTTTTGAGATCCAAATTGATGGTCATCATTCCTG
GCCTGAAATCAGAGCTTTCCTTCACAATTTTGAGGATCTCCTTGTCAGGA
ATCTTGCCGGTTCCATATGAGTCCACAAAAAGAGACAATGGCTCAGGCAC
ACCTATGGCATACGAGACTTGGACAATGCACCTGGGAGCAAGCCCGCTTG
CAACAATGCTCTTAGCAGCCTGCCTAACAATGTATGCACCAGTCCTATCC
ACCTTAGGAGGGTCTTTTCCAAAGAAAGCACAGCCACCATGGGCTCCC
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