CF834295

Overview
NameCF834295
Unique NameCF834295
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length598
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_RHOPS (S-adenosylmethionine synthetase OS=Rhodopseudomonas palustris (strain BisB5) GN=metK PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.000e-25
Identity = 58/120 (48.33%), Postives = 82/120 (68.33%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRD---DPDFTWE 591
            HGG AF GKDP KVDR+ AY  R  AK+IVA+GLA RC +Q++YAIGV  PLS+++D++GTGK+ + ++ K V E+ D  P  +  +LDL +     + + ++YGHFGR    D  F+WE
Sbjct:  270 HGGGAFSGKDPTKVDRSAAYASRYLAKNIVAAGLADRCTLQLAYAIGVARPLSIYIDTHGTGKVSEDKLEKAVAEAMDLTPRGIRTHLDLNK---PIYARTSSYGHFGRTPDADGGFSWE 386          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_PARDP (S-adenosylmethionine synthetase OS=Paracoccus denitrificans (strain Pd 1222) GN=metK PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.000e-25
Identity = 59/120 (49.17%), Postives = 81/120 (67.50%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGR---DDPDFTWE 591
            HGG AF GKDP KVDR+ AY  R  AK++VA+GLA RC++Q+SYAIGV +PLS++ D++GT ++P+ EI + V  + D  P  +  +L L R     + + AAYGHFGR    D  F+WE
Sbjct:  260 HGGGAFSGKDPTKVDRSAAYAARYLAKNVVAAGLAKRCVIQLSYAIGVAKPLSIYADTFGTSEVPEAEIERAVSRAMDLTPRGIREHLALCR---PIYRRTAAYGHFGRAPDADGGFSWE 376          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_HELHP (S-adenosylmethionine synthetase OS=Helicobacter hepaticus GN=metK PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.000e-25
Identity = 60/117 (51.28%), Postives = 79/117 (67.52%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG AF GKDP KVDR+ AY  R  AK++VASG+  + IVQV+YAIGV EP+S+ VD+ GTGK+ D ++ + VK      P  +  +LDL R     + K AAYGHFGR+  +F+WE
Sbjct:  258 HGGGAFSGKDPSKVDRSAAYAARYVAKNLVASGVCDKAIVQVAYAIGVVEPVSILVDTQGTGKVEDSKLTECVKAVFRLTPKGIIESLDLLR---PIYRKTAAYGHFGRELNEFSWE 371          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_ENT38 (S-adenosylmethionine synthetase OS=Enterobacter sp. (strain 638) GN=metK PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.000e-25
Identity = 61/117 (52.14%), Postives = 80/117 (68.38%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG AF GKDP KVDR+ AY  R  AK+IVA+GLA RC +QVSYAIGV EP S+ V+++GT K+P +++  +V+E  D RP  +   LDL    +  + + AAYGHFGR+   F WE
Sbjct:  258 HGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRCEIQVSYAIGVAEPTSIMVETFGTEKLPTEQLTLLVREFFDLRPYGLIQMLDLL---HPIYKETAAYGHFGRE--HFPWE 369          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_BUCAT (S-adenosylmethionine synthetase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain Tuc7) GN=metK PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.000e-25
Identity = 59/117 (50.43%), Postives = 79/117 (67.52%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG AF GKDP KVDR+ AY  R  AK+IVASGLA RC +Q+SYAIG+ EP+S+ +D++ TGKI +  ++ +V+   D RP  +   L+L +     +LK A YGHFGR   +F WE
Sbjct:  258 HGGGAFSGKDPSKVDRSAAYAARYVAKNIVASGLAARCEIQLSYAIGIAEPISIMIDTFNTGKISNSALISLVRSIFDLRPYGLIKMLNLLQ---PIYLKTAVYGHFGR--KEFPWE 369          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_BUCAI (S-adenosylmethionine synthetase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=metK PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.000e-25
Identity = 59/117 (50.43%), Postives = 79/117 (67.52%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG AF GKDP KVDR+ AY  R  AK+IVASGLA RC +Q+SYAIG+ EP+S+ +D++ TGKI +  ++ +V+   D RP  +   L+L +     +LK A YGHFGR   +F WE
Sbjct:  258 HGGGAFSGKDPSKVDRSAAYAARYVAKNIVASGLAARCEIQLSYAIGIAEPISIMIDTFNTGKISNSALISLVRSIFDLRPYGLIKMLNLLQ---PIYLKTAVYGHFGR--KEFPWE 369          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_BUCA5 (S-adenosylmethionine synthetase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain 5A) GN=metK PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.000e-25
Identity = 59/117 (50.43%), Postives = 79/117 (67.52%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG AF GKDP KVDR+ AY  R  AK+IVASGLA RC +Q+SYAIG+ EP+S+ +D++ TGKI +  ++ +V+   D RP  +   L+L +     +LK A YGHFGR   +F WE
Sbjct:  258 HGGGAFSGKDPSKVDRSAAYAARYVAKNIVASGLAARCEIQLSYAIGIAEPISIMIDTFNTGKISNSALISLVRSIFDLRPYGLIKMLNLLQ---PIYLKTAVYGHFGR--KEFPWE 369          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_BACSK (S-adenosylmethionine synthetase OS=Bacillus clausii (strain KSM-K16) GN=metK PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.000e-25
Identity = 58/117 (49.57%), Postives = 81/117 (69.23%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG AF GKD  KVDR+GAY  R  AK+IVA+GLA +C VQ++YAIGV +P+S+ V+++GTGK  +  ++++V++  D RP  +   LDL+R     + + AAYGHFGR D    WE
Sbjct:  274 HGGGAFSGKDATKVDRSGAYAARYVAKNIVAAGLADKCEVQLAYAIGVAQPVSIAVNTFGTGKAAEDVLVELVRKHFDLRPAGIIRMLDLRR---PIYKQTAAYGHFGRTDVPLPWE 387          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_YERPY (S-adenosylmethionine synthetase OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=metK PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.612e-25
Identity = 62/117 (52.99%), Postives = 79/117 (67.52%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG AF GKDP KVDR+ AY  R  AK+IVA+GLA RC +QVSYAIGV EP S+ V+++GT KIP  ++  +V+E  D RP  +   LDL    +  + + AAYGHFGR+   F WE
Sbjct:  258 HGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRCEIQVSYAIGVAEPTSIMVEAFGTEKIPADQLTLLVREFFDLRPYGLIKMLDLL---HPIYRETAAYGHFGRE--HFPWE 369          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_YERPS (S-adenosylmethionine synthetase OS=Yersinia pseudotuberculosis GN=metK PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.612e-25
Identity = 62/117 (52.99%), Postives = 79/117 (67.52%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG AF GKDP KVDR+ AY  R  AK+IVA+GLA RC +QVSYAIGV EP S+ V+++GT KIP  ++  +V+E  D RP  +   LDL    +  + + AAYGHFGR+   F WE
Sbjct:  258 HGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRCEIQVSYAIGVAEPTSIMVEAFGTEKIPADQLTLLVREFFDLRPYGLIKMLDLL---HPIYRETAAYGHFGRE--HFPWE 369          
The following BLAST results are available for this feature:
BLAST of CF834295 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_RHOPS2.000e-2548.33S-adenosylmethionine synthetase OS=Rhodopseudomona... [more]
METK_PARDP2.000e-2549.17S-adenosylmethionine synthetase OS=Paracoccus deni... [more]
METK_HELHP2.000e-2551.28S-adenosylmethionine synthetase OS=Helicobacter he... [more]
METK_ENT382.000e-2552.14S-adenosylmethionine synthetase OS=Enterobacter sp... [more]
METK_BUCAT2.000e-2550.43S-adenosylmethionine synthetase OS=Buchnera aphidi... [more]
METK_BUCAI2.000e-2550.43S-adenosylmethionine synthetase OS=Buchnera aphidi... [more]
METK_BUCA52.000e-2550.43S-adenosylmethionine synthetase OS=Buchnera aphidi... [more]
METK_BACSK2.000e-2549.57S-adenosylmethionine synthetase OS=Bacillus clausi... [more]
METK_YERPY2.612e-2552.99S-adenosylmethionine synthetase OS=Yersinia pseudo... [more]
METK_YERPS2.612e-2552.99S-adenosylmethionine synthetase OS=Yersinia pseudo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05E14_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05E14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834295 ID=CF834295; Name=CF834295; organism=Citrus sinensis; type=EST; length=598bp
GGAACATTAAACCAAAACCAAAAAAGACCTCGGGGAAAGAAGAAAAAGAA
AGGAATTGAATGGGGAACATGTATGAGTTCCGAACACAGGAGATTTGCTT
AGTATTACAAAGCAGCAGCAAGATAATATTCAAATTATTCATCCACTACC
AATAGAAGCAAACTTGAACAGGAGGGATAGTTTGCACTTTTCAACTCAAA
TTTAAGCTTGAGGCTTTTCCCACTTGAGGGGCTTCACAACTTCCCAAGTG
AAGTCTGGGTCATCCCTGCCAAAGTGTCCATAGGCAGCAGGCTTCAAGAA
CCTGCCATTACCGCCCCTTTTGAGATCCAAATTGATGGTCATCATTCCTG
GCCTGAAATCAGAGCTTTCCTTCACAATTTTGAGGATCTCCTTGTCAGGA
ATCTTGCCGGTTCCATATGAGTCCACAAAAAGAGACAATGGCTCAGGCAC
ACCTATGGCATACGAGACTTGGACAATGCACCTGGGAGCAAGCCCGCTTG
CAACAATGCTCTTAGCAGCCTGCCTAACAATGTATGCACCAGTCCTATCC
ACCTTAGGAGGGTCTTTTCCAAAGAAAGCACAGCCACCATGGGCTCCC
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