CF834295

Overview
NameCF834295
Unique NameCF834295
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length598
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_LACPL (S-adenosylmethionine synthetase OS=Lactobacillus plantarum GN=metK PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.612e-25
Identity = 58/117 (49.57%), Postives = 80/117 (68.38%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG AF GKD  KVDR+ +Y  R  AK++VA+GLA +  VQ++YAIGV EP+S+ VD+ GTGK+ D+ ++  ++E+ D RP  +   LDL+R     + + AAYGHFGR D D  WE
Sbjct:  269 HGGGAFSGKDATKVDRSASYAARYIAKNVVAAGLADQVEVQLAYAIGVAEPVSIAVDTAGTGKVSDEALINAIRENFDLRPAGIIKMLDLQR---PIYRQTAAYGHFGRTDIDLPWE 382          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_LACH4 (S-adenosylmethionine synthetase OS=Lactobacillus helveticus (strain DPC 4571) GN=metK PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.612e-25
Identity = 59/117 (50.43%), Postives = 78/117 (66.67%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG AF GKD  KVDR+ +Y  R  AK+IVA+GLA RC VQ++YAIGV  P+S+ +D+ GTGK+ D  + + V+   D RP  +   LDL+R     + + AAYGHFGR D D +WE
Sbjct:  270 HGGGAFSGKDSTKVDRSASYAARYVAKNIVAAGLAYRCEVQLAYAIGVAHPVSIMIDTAGTGKVDDDLLTEAVRHVFDLRPAGIIKMLDLRR---PIYEQTAAYGHFGRTDVDLSWE 383          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_KOSOT (S-adenosylmethionine synthetase OS=Kosmotoga olearia (strain TBF 19.5.1) GN=metK PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.612e-25
Identity = 58/117 (49.57%), Postives = 80/117 (68.38%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG AF GKDP KVDR+  Y+ R  AK+IVA+GLA R  +Q++YAIGV  P+S  +D++GT K+  +++ K+VKE  DFRP  +   L+L+R     + + AAYGHFGR D +  WE
Sbjct:  267 HGGGAFSGKDPTKVDRSAHYMARYVAKNIVAAGLADRVTLQIAYAIGVAHPVSFMIDAHGTEKVALEKLEKVVKEVFDFRPAAIIDKLNLRR---PIYKQVAAYGHFGRIDVEVPWE 380          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_HAEDU (S-adenosylmethionine synthetase OS=Haemophilus ducreyi GN=metK PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.612e-25
Identity = 59/117 (50.43%), Postives = 81/117 (69.23%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG AF GKDP KVDR+ AY  R  AKSIVA+GLA RC +Q+SYAIGV +P S+ V+++GTGK+ +  ++K++ ++ D RP  +   LDL +     + + AAYGHFGR+   F WE
Sbjct:  263 HGGGAFSGKDPSKVDRSAAYAARYVAKSIVAAGLADRCEIQLSYAIGVADPTSIMVETFGTGKVSNDTLVKLIYQNFDLRPYGLIKMLDLIQ---PIYRETAAYGHFGRE--QFPWE 374          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_SYNR3 (S-adenosylmethionine synthetase OS=Synechococcus sp. (strain RCC307) GN=metK PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.411e-25
Identity = 61/124 (49.19%), Postives = 82/124 (66.13%), Query Frame = -2
Query:  235 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLK-----RGGNGRFLKPAAYGHFGRDDPDFTWEVV 591
            HGG AF GKDP KVDR+ AY  R  AK++VA+GLA +  VQ+SYAIGV +P+S+ V+S+GT    + E+ ++V  + D RPG +  N  L+     RGGN  + + AAYGHFGR D +  WE V
Sbjct:  276 HGGGAFSGKDPTKVDRSAAYAARFVAKALVAAGLARKAEVQLSYAIGVAKPVSILVESFGTSSHSNDELTELVNANFDLRPGAIIENFKLRNLPQQRGGN-FYREVAAYGHFGRSDLNLPWEDV 398          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_SORC5 (S-adenosylmethionine synthetase OS=Sorangium cellulosum (strain So ce56) GN=metK PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.411e-25
Identity = 58/119 (48.74%), Postives = 80/119 (67.23%), Query Frame = -2
Query:  241 GAHGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 597
            G HGG AF GKDP KVDR+  Y  R  AK++VAS LA RC VQ++YAIGV +P+ + V+++GTG++ +  + K + ++ D RP  +   LDL +     + K AAYGHFGRD  +FTWE
Sbjct:  258 GRHGGGAFSGKDPTKVDRSACYYARYVAKNVVASKLAARCEVQIAYAIGVAQPVGVHVNTFGTGRVGEDVLEKYIMQNFDMRPKAIIEQLDLLK---PIYRKTAAYGHFGRD--EFTWE 371          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_SODGM (S-adenosylmethionine synthetase OS=Sodalis glossinidius (strain morsitans) GN=metK PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.411e-25
Identity = 61/117 (52.14%), Postives = 78/117 (66.67%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG AF GKDP KVDR+ AY  R  AK+IVA+GLA RC +QVSYAIGV EP S+ ++++GT KIP   +  +V+E  D RP  +   LDL +     + + AAYGHFGR+   F WE
Sbjct:  258 HGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLAERCEIQVSYAIGVAEPTSITIETFGTEKIPADNLTALVREFFDLRPHGLITMLDLLQ---PIYRETAAYGHFGRE--HFPWE 369          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_LEUMM (S-adenosylmethionine synthetase OS=Leuconostoc mesenteroides subsp. mesenteroides (strain ATCC 8293 / NCDO 523) GN=metK PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.411e-25
Identity = 60/123 (48.78%), Postives = 84/123 (68.29%), Query Frame = -2
Query:  223 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWEVVKPLK 591
            HGG AF GKD  KVDR+ AY  R  AK++VA+G+A +  +QVSYAIGV  P+SL VDS+GT K+ +++I +I+ +  DFRP  +  NL+L+R     + + AA+GHFGR D D  WE +  +K
Sbjct:  260 HGGGAFSGKDATKVDRSAAYYARYVAKNMVAAGVADKLELQVSYAIGVARPVSLNVDSFGTAKVSEEKINEIITKLFDFRPLAIINNLNLRR---PIYKQTAAFGHFGRTDIDLPWESLDKVK 379          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_LACS1 (S-adenosylmethionine synthetase OS=Lactobacillus salivarius subsp. salivarius (strain UCC118) GN=metK PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.411e-25
Identity = 57/117 (48.72%), Postives = 82/117 (70.09%), Query Frame = -2
Query:  241 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWE 591
            HGG AF GKD  KVDR+ +Y  R  AK+IVA+GLA +  VQ+SYAIGV +P+S+ V+++G+GK+P+++++  +++  D RP  +   LDL+R     + K AAYGHFGR D D  WE
Sbjct:  269 HGGGAFSGKDATKVDRSASYAARYIAKNIVAAGLASQVEVQISYAIGVAQPVSVSVNTFGSGKVPNQKLVDAIRKVFDLRPAGIIKMLDLRR---PIYKKTAAYGHFGRTDIDLPWE 382          
BLAST of CF834295 vs. ExPASy Swiss-Prot
Match: METK_HAEIG (S-adenosylmethionine synthetase OS=Haemophilus influenzae (strain PittGG) GN=metK PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.411e-25
Identity = 60/119 (50.42%), Postives = 82/119 (68.91%), Query Frame = -2
Query:  235 HGGCAFFGKDPPKVDRTGAYIVRQAAKSIVASGLAPRCIVQVSYAIGVPEPLSLFVDSYGTGKIPDKEILKIVKESSDFRPGMMTINLDLKRGGNGRFLKPAAYGHFGRDDPDFTWEVV 591
            HGG AF GKDP KVDR+ AY  R  AK+IVA+GLA RC +Q+SYAIGV +P S+ V+++GTGK+ ++ ++ +V+E  D RP  +   LDL +     + + AAYGHFGR+   F WE V
Sbjct:  258 HGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRCEIQLSYAIGVADPTSIMVETFGTGKVANELLVSLVREFFDLRPYGLIKMLDLIQ---PIYRETAAYGHFGRE--QFPWEKV 371          
The following BLAST results are available for this feature:
BLAST of CF834295 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_LACPL2.612e-2549.57S-adenosylmethionine synthetase OS=Lactobacillus p... [more]
METK_LACH42.612e-2550.43S-adenosylmethionine synthetase OS=Lactobacillus h... [more]
METK_KOSOT2.612e-2549.57S-adenosylmethionine synthetase OS=Kosmotoga olear... [more]
METK_HAEDU2.612e-2550.43S-adenosylmethionine synthetase OS=Haemophilus duc... [more]
METK_SYNR33.411e-2549.19S-adenosylmethionine synthetase OS=Synechococcus s... [more]
METK_SORC53.411e-2548.74S-adenosylmethionine synthetase OS=Sorangium cellu... [more]
METK_SODGM3.411e-2552.14S-adenosylmethionine synthetase OS=Sodalis glossin... [more]
METK_LEUMM3.411e-2548.78S-adenosylmethionine synthetase OS=Leuconostoc mes... [more]
METK_LACS13.411e-2548.72S-adenosylmethionine synthetase OS=Lactobacillus s... [more]
METK_HAEIG3.411e-2550.42S-adenosylmethionine synthetase OS=Haemophilus inf... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05E14_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05E14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834295 ID=CF834295; Name=CF834295; organism=Citrus sinensis; type=EST; length=598bp
GGAACATTAAACCAAAACCAAAAAAGACCTCGGGGAAAGAAGAAAAAGAA
AGGAATTGAATGGGGAACATGTATGAGTTCCGAACACAGGAGATTTGCTT
AGTATTACAAAGCAGCAGCAAGATAATATTCAAATTATTCATCCACTACC
AATAGAAGCAAACTTGAACAGGAGGGATAGTTTGCACTTTTCAACTCAAA
TTTAAGCTTGAGGCTTTTCCCACTTGAGGGGCTTCACAACTTCCCAAGTG
AAGTCTGGGTCATCCCTGCCAAAGTGTCCATAGGCAGCAGGCTTCAAGAA
CCTGCCATTACCGCCCCTTTTGAGATCCAAATTGATGGTCATCATTCCTG
GCCTGAAATCAGAGCTTTCCTTCACAATTTTGAGGATCTCCTTGTCAGGA
ATCTTGCCGGTTCCATATGAGTCCACAAAAAGAGACAATGGCTCAGGCAC
ACCTATGGCATACGAGACTTGGACAATGCACCTGGGAGCAAGCCCGCTTG
CAACAATGCTCTTAGCAGCCTGCCTAACAATGTATGCACCAGTCCTATCC
ACCTTAGGAGGGTCTTTTCCAAAGAAAGCACAGCCACCATGGGCTCCC
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