CF834358

Overview
NameCF834358
Unique NameCF834358
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length668
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834358 vs. ExPASy Swiss-Prot
Match: RS9_RICPU (30S ribosomal protein S9 OS=Rickettsia peacockii (strain Rustic) GN=rpsI PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.913e-31
Identity = 68/127 (53.54%), Postives = 85/127 (66.93%), Query Frame = -2
Query:  287 GRVYGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDHRGALLGPFFETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 667
            G+ Y TG+RK +IARVW++ G GK +VN K    YFP   +   +L PF  TKT+  +D+ CTV+GGG+SGQ GA+  GIS+AL    PD    LR  G LTRDSRVVERKK G+ KARK  Q+ KR
Sbjct:   33 GKFYATGKRKNAIARVWLKVGKGKIVVNKKTIAQYFPSETYVKTILQPFVLTKTIDQYDIICTVRGGGISGQKGAILHGISKALDKSAPDFHAILRKGGLLTRDSRVVERKKYGQRKARKKTQFSKR 159          
BLAST of CF834358 vs. ExPASy Swiss-Prot
Match: RS9_RICM5 (30S ribosomal protein S9 OS=Rickettsia massiliae (strain Mtu5) GN=rpsI PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.913e-31
Identity = 69/127 (54.33%), Postives = 85/127 (66.93%), Query Frame = -2
Query:  287 GRVYGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDHRGALLGPFFETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 667
            G+ Y TG+RK +IARVW++ G GK +VN K    YFP   +   +L PF  TKT+  +DV CTV+GGG+SGQ GA+  GIS+AL    PD    LR  G LTRDSRVVERKK G+ KARK  Q+ KR
Sbjct:   33 GKFYATGKRKNAIARVWLKVGKGKIVVNKKTIAQYFPSETYVKTILQPFVLTKTIDQYDVICTVRGGGISGQKGAILHGISKALDKSAPDFHVILRKGGLLTRDSRVVERKKYGQRKARKKTQFSKR 159          
BLAST of CF834358 vs. ExPASy Swiss-Prot
Match: RS9_RICAE (30S ribosomal protein S9 OS=Rickettsia africae (strain ESF-5) GN=rpsI PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.913e-31
Identity = 68/127 (53.54%), Postives = 85/127 (66.93%), Query Frame = -2
Query:  287 GRVYGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDHRGALLGPFFETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 667
            G+ Y TG+RK +IARVW++ G GK +VN K    YFP   +   +L PF  TKT+  +D+ CTV+GGG+SGQ GA+  GIS+AL    PD    LR  G LTRDSRVVERKK G+ KARK  Q+ KR
Sbjct:   33 GKFYATGKRKNAIARVWLKVGKGKIVVNKKTIAQYFPSETYVKTILKPFVLTKTIDQYDIICTVRGGGISGQKGAILHGISKALDKSAPDFHAILRKGGLLTRDSRVVERKKYGQRKARKKTQFSKR 159          
BLAST of CF834358 vs. ExPASy Swiss-Prot
Match: RS9_RICCK (30S ribosomal protein S9 OS=Rickettsia canadensis (strain McKiel) GN=rpsI PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.487e-30
Identity = 68/126 (53.97%), Postives = 84/126 (66.67%), Query Frame = -2
Query:  287 RVYGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDHRGALLGPFFETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 664
            + Y TG+RK +IARVW++ G GK +VN K  D YF    +   +L PF  TKT+  +DV CTV+GGG+SGQ GA+  GIS+AL    PD    LR  G LTRDSRVVERKK G+ KARK  Q+ KR
Sbjct:   36 KFYATGKRKNAIARVWLKVGKGKIVVNKKTIDQYFSSETYVKTILQPFVLTKTIDQYDVICTVRGGGISGQKGAILHGISKALDKSAPDFHAMLRKGGLLTRDSRVVERKKYGQRKARKKTQFSKR 161          
BLAST of CF834358 vs. ExPASy Swiss-Prot
Match: RS9_METEP (30S ribosomal protein S9 OS=Methylobacterium extorquens (strain PA1) GN=rpsI PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.487e-30
Identity = 67/127 (52.76%), Postives = 88/127 (69.29%), Query Frame = -2
Query:  287 GRVYGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDHRGALLGPFFETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 667
            GR Y TG+RK ++ARVWI+PG+G  +VN +  + YF     R  L  P      +  +D+  TVKGGG+SGQ GAVR G+S+AL  +EP+LR +L+  GFLTRD RVVERKK G+ KAR+SFQ+ KR
Sbjct:   35 GRAYATGKRKDAVARVWIKPGNGTVVVNGRPVETYFARPVLRMILRQPLEIVSRVDQYDITVTVKGGGLSGQAGAVRHGLSKALTYYEPELRSSLKREGFLTRDPRVVERKKYGRKKARRSFQFSKR 161          
BLAST of CF834358 vs. ExPASy Swiss-Prot
Match: RS9_METC4 (30S ribosomal protein S9 OS=Methylobacterium chloromethanicum (strain CM4 / NCIMB 13688) GN=rpsI PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.487e-30
Identity = 67/127 (52.76%), Postives = 88/127 (69.29%), Query Frame = -2
Query:  287 GRVYGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDHRGALLGPFFETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 667
            GR Y TG+RK ++ARVWI+PG+G  +VN +  + YF     R  L  P      +  +D+  TVKGGG+SGQ GAVR G+S+AL  +EP+LR +L+  GFLTRD RVVERKK G+ KAR+SFQ+ KR
Sbjct:   35 GRAYATGKRKDAVARVWIKPGNGTVVVNGRPVETYFARPVLRMILRQPLEIVSRVDQYDITVTVKGGGLSGQAGAVRHGLSKALTYYEPELRSSLKREGFLTRDPRVVERKKYGRKKARRSFQFSKR 161          
BLAST of CF834358 vs. ExPASy Swiss-Prot
Match: RS9_CLOTH (30S ribosomal protein S9 OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=rpsI PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.487e-30
Identity = 69/124 (55.65%), Postives = 88/124 (70.97%), Query Frame = -2
Query:  287 YGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDHRGALLGPFFETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 658
            YGTGRRK S+ARV + PGDGK I+N++E D YF +   +  +  P   T TLG +DV C V GGG +GQ GA+R GISRAL  ++ +LRPAL+ AGFLTRD R+ ERKK G  KAR++ Q+ KR
Sbjct:    7 YGTGRRKKSVARVRLVPGDGKIIINERELDDYFGLETLKTIVKQPLVLTDTLGKFDVLCKVAGGGYTGQAGAIRHGISRALLKFDEELRPALKKAGFLTRDPRMKERKKYGLKKARRAPQFSKR 130          
BLAST of CF834358 vs. ExPASy Swiss-Prot
Match: RS9_RICPR (30S ribosomal protein S9 OS=Rickettsia prowazekii GN=rpsI PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.536e-30
Identity = 68/126 (53.97%), Postives = 85/126 (67.46%), Query Frame = -2
Query:  287 RVYGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDHRGALLGPFFETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 664
            + Y TG+RK +IARVW++ G GK +VN+K  + YFP   +   +L PF  TKT+  +DV CTVKGGG+SGQ GA+  GIS+AL    P     LR  G LTRDSRVVERKK G+ KARK  Q+ KR
Sbjct:   36 KFYATGKRKNAIARVWLKVGKGKIVVNNKILNQYFPSETYVKTILQPFILTKTIDQYDVICTVKGGGISGQKGAILHGISKALDKSAPCFHAILRKGGLLTRDSRVVERKKYGQRKARKKTQFSKR 161          
BLAST of CF834358 vs. ExPASy Swiss-Prot
Match: RS9_METNO (30S ribosomal protein S9 OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=rpsI PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.536e-30
Identity = 68/127 (53.54%), Postives = 85/127 (66.93%), Query Frame = -2
Query:  287 GRVYGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDHRGALLGPFFETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 667
            GR Y TG+RK ++ARVWI+PG G   VND+  D YF     R  L  P      +  +D+  TV GGG+SGQ GAVR G++RAL  +EP+LR  L+  GFLTRD RVVERKK G+ KAR+SFQ+ KR
Sbjct:   36 GRAYATGKRKDAVARVWIKPGAGTITVNDRPVDTYFARPVLRMILQQPLHVANRVDQYDIVVTVTGGGLSGQAGAVRHGLARALTYYEPELRSPLKREGFLTRDPRVVERKKYGRKKARRSFQFSKR 162          
BLAST of CF834358 vs. ExPASy Swiss-Prot
Match: RS9_LISW6 (30S ribosomal protein S9 OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=rpsI PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.313e-30
Identity = 65/124 (52.42%), Postives = 88/124 (70.97%), Query Frame = -2
Query:  287 YGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDHRGALLGPFFETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 658
            YGTGRRK S+ARV + PGDGK ++N+++++ Y P    R  +  P   T+TLG +DV   V+GGG +GQ GA+R G++RAL    P+ RPAL+SAG LTRDSR+ ERKKPG   AR++ Q+ KR
Sbjct:    7 YGTGRRKSSVARVRLVPGDGKIVINNRDWEDYIPFAALREVIKQPLVATETLGNYDVLVNVRGGGYTGQAGAIRHGVARALLQVAPEYRPALKSAGLLTRDSRMKERKKPGLKGARRAPQFSKR 130          
The following BLAST results are available for this feature:
BLAST of CF834358 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS9_RICPU3.913e-3153.5430S ribosomal protein S9 OS=Rickettsia peacockii (... [more]
RS9_RICM53.913e-3154.3330S ribosomal protein S9 OS=Rickettsia massiliae (... [more]
RS9_RICAE3.913e-3153.5430S ribosomal protein S9 OS=Rickettsia africae (st... [more]
RS9_RICCK1.487e-3053.9730S ribosomal protein S9 OS=Rickettsia canadensis ... [more]
RS9_METEP1.487e-3052.7630S ribosomal protein S9 OS=Methylobacterium extor... [more]
RS9_METC41.487e-3052.7630S ribosomal protein S9 OS=Methylobacterium chlor... [more]
RS9_CLOTH1.487e-3055.6530S ribosomal protein S9 OS=Clostridium thermocell... [more]
RS9_RICPR2.536e-3053.9730S ribosomal protein S9 OS=Rickettsia prowazekii ... [more]
RS9_METNO2.536e-3053.5430S ribosomal protein S9 OS=Methylobacterium nodul... [more]
RS9_LISW63.313e-3052.4230S ribosomal protein S9 OS=Listeria welshimeri se... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05G09_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834358 ID=CF834358; Name=CF834358; organism=Citrus sinensis; type=EST; length=668bp
TTTTTTTTTTTCCTTTTGGGCTCACAAATGCTCCTCTCTTGTATTTGCAC
CCCCATATGACATAAGGGTACAAACTACAAACAGTTTTGTTTAACAAATA
AACTGCTCAAAAATCTTCACAGCTTTTCCATGACCGTGTGCGTACAGAAA
GCAAGAAGCAGGGCGTGTTGAATGGACATGCCCAGCCGGTTGGATACTCT
TAAGACTCGACAAGTTATTGCAATGAGGCAAAACTGAACTTCCATAGAAC
GTGGGCCATTGAAATGGAAGCCCCAATTGTCGATTAACGCTTAACCCATT
GGAAGCTCTTTCTCGCTTTTGCCTTCCCTGGTTTTTTCCTTTCAACCACA
CGTGAATCTCTCGTCAAGAAACCAGCGGATCTGAGTGCAGGACGTAGATC
TGGTTCCCAATTTTGCAATGCCCTGCTGATCCCTAGCCTAACAGCTCCAA
CTTGACCTGAAACGCCACCCCCTTTGACAGTACAATCGACATCCCAAAGG
CCCAAGGTCTTTGTCTCAAAGAAAGGTCCAAGAAGTGCACCACGATGATC
AAGCATTGGGAAATAAACGTCAAATTCTTTATCATTAACAATGAATTTTC
CATCACCAGGCTGAATCCAAACACGAGCTATACTGCATTTCCTTCTCCCT
GTTCCATAAACCCTTCCT
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