CF834358

Overview
NameCF834358
Unique NameCF834358
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length668
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834358 vs. ExPASy Swiss-Prot
Match: RS9_METPB (30S ribosomal protein S9 OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=rpsI PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.326e-30
Identity = 67/127 (52.76%), Postives = 87/127 (68.50%), Query Frame = -2
Query:  287 GRVYGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDHRGALLGPFFETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 667
            GR Y TG+RK ++ARVWI+PG+G  +VN +  + YF     R  L  P      +  +D+  TVKGGG+SGQ GAVR G+S+AL  +EP+LR  L+  GFLTRD RVVERKK G+ KAR+SFQ+ KR
Sbjct:   35 GRAYATGKRKDAVARVWIKPGNGTVVVNGRAVETYFARPVLRMILRQPLEIVGRVDQYDITVTVKGGGLSGQAGAVRHGLSKALTYYEPELRSPLKREGFLTRDPRVVERKKYGRKKARRSFQFSKR 161          
BLAST of CF834358 vs. ExPASy Swiss-Prot
Match: RS9_CARHZ (30S ribosomal protein S9 OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=rpsI PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.326e-30
Identity = 66/124 (53.23%), Postives = 84/124 (67.74%), Query Frame = -2
Query:  287 YGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDHRGALLGPFFETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 658
            YGTGRRK ++ARV++ PG+G   +N K  + YFP    +  +  P   T T+G +DV   V GGG+SGQ GAVRLGI+RAL   +P LRP L+ AGFLTRD R+VERKK G  K+R+  QW KR
Sbjct:    7 YGTGRRKEAVARVFVVPGEGNITINGKSLEEYFPRKTLQIIVKQPLELTNTVGKFDVKAKVHGGGISGQAGAVRLGIARALVQADPSLRPVLKKAGFLTRDPRMVERKKYGLRKSRRRPQWTKR 130          
BLAST of CF834358 vs. ExPASy Swiss-Prot
Match: RS9_RICTY (30S ribosomal protein S9 OS=Rickettsia typhi GN=rpsI PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.380e-30
Identity = 67/124 (54.03%), Postives = 84/124 (67.74%), Query Frame = -2
Query:  287 YGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDHRGALLGPFFETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 658
            Y TG+RK +IARVW++ G GK +VN+K  + YFP   +   +L PF  TKT+  +DV CTV+GGG+SGQ GA+  GIS+AL    P     LR  G LTRDSRVVERKK G+ KARK  Q+ KR
Sbjct:   38 YATGKRKNAIARVWLKVGKGKIVVNNKILNQYFPSETYIKTILQPFLLTKTIDQYDVICTVRGGGISGQKGAILHGISKALDKSAPCFHAILRKGGLLTRDSRVVERKKYGQRKARKKTQFSKR 161          
BLAST of CF834358 vs. ExPASy Swiss-Prot
Match: RS9_LISMO (30S ribosomal protein S9 OS=Listeria monocytogenes GN=rpsI PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.380e-30
Identity = 65/124 (52.42%), Postives = 87/124 (70.16%), Query Frame = -2
Query:  287 YGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDHRGALLGPFFETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 658
            YGTGRRK S+ARV + PGDGK ++N+++++ Y P    R  +  P   T+TLG +DV   V GGG +GQ GA+R G++RAL    P+ RPAL+SAG LTRDSR+ ERKKPG   AR++ Q+ KR
Sbjct:    7 YGTGRRKSSVARVRLVPGDGKIVINNRDWEDYIPFAALREVIKQPLVATETLGNYDVLVNVHGGGYTGQAGAIRHGVARALLQVAPEYRPALKSAGLLTRDSRMKERKKPGLKGARRAPQFSKR 130          
BLAST of CF834358 vs. ExPASy Swiss-Prot
Match: RS9_METS4 (30S ribosomal protein S9 OS=Methylobacterium sp. (strain 4-46) GN=rpsI PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.644e-29
Identity = 66/127 (51.97%), Postives = 85/127 (66.93%), Query Frame = -2
Query:  287 GRVYGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDHRGALLGPFFETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 667
            GR Y TG+RK ++ARVWI+PG G   VND+  + YF     R  L  P         +D+  TV GGG+SGQ GAVR G+++AL ++EP+LR  L+  GFLTRD RVVERKK G+ KAR+SFQ+ KR
Sbjct:   36 GRAYATGKRKDAVARVWIKPGSGVITVNDRPVETYFARPVLRMILQQPLQVANRADQYDIVVTVTGGGLSGQAGAVRHGLAKALTHYEPELRSPLKREGFLTRDPRVVERKKYGRKKARRSFQFSKR 162          
BLAST of CF834358 vs. ExPASy Swiss-Prot
Match: RS9_LACLS (30S ribosomal protein S9 OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=rpsI PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.644e-29
Identity = 68/123 (55.28%), Postives = 84/123 (68.29%), Query Frame = -2
Query:  287 GTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDHRGALLGPFFETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 655
            GTGRRK ++ARV + PG GK  VN +E + Y P  D R  +  PF  T+T G +D    V GGGVSGQ GA+R GI+RAL   +PD R AL+ AG LTRD+R+VERKKPG  KARK+ Q+ KR
Sbjct:    8 GTGRRKNAVARVRLVPGTGKITVNGREVESYIPHADMRLVINQPFAATQTEGSYDTLVNVNGGGVSGQAGAIRHGIARALLQVDPDFRSALKRAGLLTRDARMVERKKPGLKKARKASQFSKR 130          
BLAST of CF834358 vs. ExPASy Swiss-Prot
Match: RS9_LACLM (30S ribosomal protein S9 OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=rpsI PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.644e-29
Identity = 68/123 (55.28%), Postives = 84/123 (68.29%), Query Frame = -2
Query:  287 GTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDHRGALLGPFFETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 655
            GTGRRK ++ARV + PG GK  VN +E + Y P  D R  +  PF  T+T G +D    V GGGVSGQ GA+R GI+RAL   +PD R AL+ AG LTRD+R+VERKKPG  KARK+ Q+ KR
Sbjct:    8 GTGRRKNAVARVRLVPGTGKITVNGREVESYIPHADMRLVINQPFAATQTEGSYDTLVNVNGGGVSGQAGAIRHGIARALLQVDPDFRSALKRAGLLTRDARMVERKKPGLKKARKASQFSKR 130          
BLAST of CF834358 vs. ExPASy Swiss-Prot
Match: RS9_LACLA (30S ribosomal protein S9 OS=Lactococcus lactis subsp. lactis GN=rpsI PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.644e-29
Identity = 68/123 (55.28%), Postives = 84/123 (68.29%), Query Frame = -2
Query:  287 GTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDHRGALLGPFFETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 655
            GTGRRK ++ARV + PG GK  VN +E + Y P  D R  +  PF  T+T G +D    V GGGVSGQ GA+R GI+RAL   +PD R AL+ AG LTRD+R+VERKKPG  KARK+ Q+ KR
Sbjct:    8 GTGRRKNAVARVRLVPGTGKITVNGREVESYIPHADMRLVINQPFAATQTEGSYDTLVNVNGGGVSGQAGAIRHGIARALLQVDPDFRSALKRAGLLTRDARMVERKKPGLKKARKASQFSKR 130          
BLAST of CF834358 vs. ExPASy Swiss-Prot
Match: RS9_THET2 (30S ribosomal protein S9 OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=rpsI PE=1 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.783e-29
Identity = 66/124 (53.23%), Postives = 87/124 (70.16%), Query Frame = -2
Query:  287 YGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDHRGALLGPFFETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 658
            YGTGRRK ++ARV+++PG+GK  VN ++F+ YF  L    A L P      LG +D   TV+GGG SGQ+ A++LGI+RAL  + PD R  L+  GFLTRD+RVVERKK GK KAR++ Q+ KR
Sbjct:    5 YGTGRRKEAVARVFLRPGNGKVTVNGQDFNEYFQGLVRAVAALEPLRAVDALGRFDAYITVRGGGKSGQIDAIKLGIARALVQYNPDYRAKLKPLGFLTRDARVVERKKYGKHKARRAPQYSKR 128          
BLAST of CF834358 vs. ExPASy Swiss-Prot
Match: RS9_METRJ (30S ribosomal protein S9 OS=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) GN=rpsI PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.783e-29
Identity = 65/127 (51.18%), Postives = 86/127 (67.72%), Query Frame = -2
Query:  287 GRVYGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDHRGALLGPFFETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 667
            GR Y TG+RK ++ARVWI+PG+G   +N +  + YF     R  L  P      +  +D+  TV GGG+SGQ GAVR G+S+AL  +EP+LR  L+  GFLTRD+RVVERKK G+ KAR+SFQ+ KR
Sbjct:   35 GRAYATGKRKDAVARVWIKPGNGTVTINKRPVETYFARPVLRMILRQPLEIAGRVDQYDITVTVAGGGLSGQAGAVRHGLSKALTYYEPELRAPLKREGFLTRDARVVERKKYGRKKARRSFQFSKR 161          
The following BLAST results are available for this feature:
BLAST of CF834358 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS9_METPB4.326e-3052.7630S ribosomal protein S9 OS=Methylobacterium popul... [more]
RS9_CARHZ4.326e-3053.2330S ribosomal protein S9 OS=Carboxydothermus hydro... [more]
RS9_RICTY7.380e-3054.0330S ribosomal protein S9 OS=Rickettsia typhi GN=rp... [more]
RS9_LISMO7.380e-3052.4230S ribosomal protein S9 OS=Listeria monocytogenes... [more]
RS9_METS41.644e-2951.9730S ribosomal protein S9 OS=Methylobacterium sp. (... [more]
RS9_LACLS1.644e-2955.2830S ribosomal protein S9 OS=Lactococcus lactis sub... [more]
RS9_LACLM1.644e-2955.2830S ribosomal protein S9 OS=Lactococcus lactis sub... [more]
RS9_LACLA1.644e-2955.2830S ribosomal protein S9 OS=Lactococcus lactis sub... [more]
RS9_THET24.783e-2953.2330S ribosomal protein S9 OS=Thermus thermophilus (... [more]
RS9_METRJ4.783e-2951.1830S ribosomal protein S9 OS=Methylobacterium radio... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05G09_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834358 ID=CF834358; Name=CF834358; organism=Citrus sinensis; type=EST; length=668bp
TTTTTTTTTTTCCTTTTGGGCTCACAAATGCTCCTCTCTTGTATTTGCAC
CCCCATATGACATAAGGGTACAAACTACAAACAGTTTTGTTTAACAAATA
AACTGCTCAAAAATCTTCACAGCTTTTCCATGACCGTGTGCGTACAGAAA
GCAAGAAGCAGGGCGTGTTGAATGGACATGCCCAGCCGGTTGGATACTCT
TAAGACTCGACAAGTTATTGCAATGAGGCAAAACTGAACTTCCATAGAAC
GTGGGCCATTGAAATGGAAGCCCCAATTGTCGATTAACGCTTAACCCATT
GGAAGCTCTTTCTCGCTTTTGCCTTCCCTGGTTTTTTCCTTTCAACCACA
CGTGAATCTCTCGTCAAGAAACCAGCGGATCTGAGTGCAGGACGTAGATC
TGGTTCCCAATTTTGCAATGCCCTGCTGATCCCTAGCCTAACAGCTCCAA
CTTGACCTGAAACGCCACCCCCTTTGACAGTACAATCGACATCCCAAAGG
CCCAAGGTCTTTGTCTCAAAGAAAGGTCCAAGAAGTGCACCACGATGATC
AAGCATTGGGAAATAAACGTCAAATTCTTTATCATTAACAATGAATTTTC
CATCACCAGGCTGAATCCAAACACGAGCTATACTGCATTTCCTTCTCCCT
GTTCCATAAACCCTTCCT
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