CF834368

Overview
NameCF834368
Unique NameCF834368
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length585
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834368 vs. ExPASy Swiss-Prot
Match: NLTPA_BRAOT (Non-specific lipid-transfer protein A OS=Brassica oleracea var. italica GN=WAX9A PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.491e-30
Identity = 59/105 (56.19%), Postives = 82/105 (78.10%), Query Frame = 2
Query:   59 CMLVTGPLSA-QAITCGQVSGSLAPCIGFLKSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSI-PSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 367
            CM+V GP++A +A+TCG V+ ++APCIG++  GG +P  CC GV  LN+ ARTTPDRQ AC CL+ AAR++ P+LN   AAG+P ACGVS+P+ IST+T+C+ V+
Sbjct:   14 CMIVAGPITANRALTCGTVNSNVAPCIGYITQGGTLPGACCTGVSKLNSMARTTPDRQQACRCLETAARALGPNLNAGRAAGIPKACGVSVPFPISTNTNCNNVK 118          
BLAST of CF834368 vs. ExPASy Swiss-Prot
Match: NLTP1_TOBAC (Non-specific lipid-transfer protein 1 OS=Nicotiana tabacum GN=LTP1 PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.491e-30
Identity = 65/107 (60.75%), Postives = 81/107 (75.70%), Query Frame = 2
Query:   47 F*VLCMLVTGPLSAQAITCGQVSGSLAPCIGFLKSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 367
            F VLCM+V  P  A+AITCGQV+ +LAPC+ +L++ GP+   CC GV++L  +ARTT DRQ AC CLK AA +I  +NL  AAGLP  CGV+IPYKIS STDCSKV+
Sbjct:   10 FVVLCMVVAAPC-AEAITCGQVTSNLAPCLAYLRNTGPLGR-CCGGVKALVNSARTTEDRQIACTCLKSAAGAISGINLGKAAGLPSTCGVNIPYKISPSTDCSKVQ 114          
BLAST of CF834368 vs. ExPASy Swiss-Prot
Match: NLTP1_ARATH (Non-specific lipid-transfer protein 1 OS=Arabidopsis thaliana GN=LTP1 PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.947e-30
Identity = 61/105 (58.10%), Postives = 83/105 (79.05%), Query Frame = 2
Query:   59 CMLVTGPLSAQA-ITCGQVSGSLAPCIGFLKSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPS-LNLNNAAGLPGACGVSIPYKISTSTDCSKVR 367
            CM+V GP+++ A ++CG V+ +LA CIG++  GG IP  CC+GV++LN+ A+TTPDRQ ACNC++ AAR++ S LN   AAG+P ACGV+IPYKISTST+C  VR
Sbjct:   14 CMIVAGPITSNAALSCGSVNSNLAACIGYVLQGGVIPPACCSGVKNLNSIAKTTPDRQQACNCIQGAARALGSGLNAGRAAGIPKACGVNIPYKISTSTNCKTVR 118          
BLAST of CF834368 vs. ExPASy Swiss-Prot
Match: NLTP2_GOSHI (Non-specific lipid-transfer protein OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 3.322e-30
Identity = 61/107 (57.01%), Postives = 78/107 (72.90%), Query Frame = 2
Query:   53 VLCMLVTGPLSAQAITCGQVSGSLAPCIGFLKSGGP--IPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 367
            VLCM+V  PL+  A+T GQV+ SLAPCI +L+  G   +P  CC G++SLN+AA+TTP RQ AC C+K AA  I  +N   A+GLPG CGV+IPYKIS STDC+ V+
Sbjct:   14 VLCMVVGAPLAQGAVTSGQVTNSLAPCINYLRGSGAGAVPPGCCTGIKSLNSAAQTTPVRQAACRCIKSAAAGITGINFGLASGLPGKCGVNIPYKISPSTDCNSVK 120          
BLAST of CF834368 vs. ExPASy Swiss-Prot
Match: NLTP1_GOSHI (Non-specific lipid-transfer protein OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 3.322e-30
Identity = 61/107 (57.01%), Postives = 78/107 (72.90%), Query Frame = 2
Query:   53 VLCMLVTGPLSAQAITCGQVSGSLAPCIGFLKSGGP--IPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 367
            VLCM+V  PL+  A+T GQV+ SLAPCI +L+  G   +P  CC G++SLN+AA+TTP RQ AC C+K AA  I  +N   A+GLPG CGV+IPYKIS STDC+ V+
Sbjct:   10 VLCMVVGAPLAQGAVTSGQVTNSLAPCINYLRGSGAGAVPPGCCTGIKSLNSAAQTTPVRQAACRCIKSAAAGITGINFGLASGLPGKCGVNIPYKISPSTDCNSVK 116          
BLAST of CF834368 vs. ExPASy Swiss-Prot
Match: NLTP_GERHY (Non-specific lipid-transfer protein OS=Gerbera hybrida PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 5.666e-30
Identity = 60/104 (57.69%), Postives = 74/104 (71.15%), Query Frame = 2
Query:   53 VLCMLVTGPLSAQAITCGQVSGSLAPCIGFLKSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 364
            V CM+ +    A AI+CGQV+  L PC G+L +GGP+P  CCNGVR LN AA+TTPDRQTAC CLK    +   +NLNNA  LPG CG+SI YKI+ + DCSK+
Sbjct:   13 VACMVFSASY-ADAISCGQVTSGLVPCFGYLAAGGPVPPACCNGVRGLNNAAKTTPDRQTACGCLKGILAANTRINLNNANSLPGKCGISIGYKITPNIDCSKI 115          
BLAST of CF834368 vs. ExPASy Swiss-Prot
Match: NLTPD_BRAOT (Non-specific lipid-transfer protein D OS=Brassica oleracea var. italica GN=WAX9D PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 7.400e-30
Identity = 60/105 (57.14%), Postives = 80/105 (76.19%), Query Frame = 2
Query:   59 CMLVTGPLSAQA-ITCGQVSGSLAPCIGFLKSGGP-IPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 367
            CM+V GP+++ A ++CG VSG +APCIG+L    P +P  CC+GV SLN  ARTTPDRQ AC CL  AA ++P++N+  AAGLP ACGV+IPYKIS +T+C+ V+
Sbjct:   14 CMIVAGPITSNAALSCGTVSGYVAPCIGYLAQNAPAVPTACCSGVTSLNNMARTTPDRQQACRCLVGAANALPTINVARAAGLPKACGVNIPYKISKTTNCNSVK 118          
BLAST of CF834368 vs. ExPASy Swiss-Prot
Match: NLTP2_TOBAC (Non-specific lipid-transfer protein 2 OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 6.265e-29
Identity = 61/107 (57.01%), Postives = 79/107 (73.83%), Query Frame = 2
Query:   47 F*VLCMLVTGPLSAQAITCGQVSGSLAPCIGFLKSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 367
            F VLCM+V  P  A+A++CGQV   LAPC+ +L+  GP+   CC GV+ L  AA++  DR+TAC CLK AA +I  +++  AAGLPGACGV+IPYKIS STDCSKV+
Sbjct:   10 FVVLCMVVVAP-HAEALSCGQVQSGLAPCLPYLQGRGPLGS-CCGGVKGLLGAAKSLSDRKTACTCLKSAANAIKGIDMGKAAGLPGACGVNIPYKISPSTDCSKVQ 114          
BLAST of CF834368 vs. ExPASy Swiss-Prot
Match: NLTP3_PRUDU (Non-specific lipid-transfer protein 3 OS=Prunus dulcis PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.069e-28
Identity = 59/105 (56.19%), Postives = 73/105 (69.52%), Query Frame = 2
Query:   59 CMLVTGPLSAQAITCGQVSGSLAPCIGFLKSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNN--AAGLPGACGVSIPYKISTSTDCSKVR 367
            CM V GP +  A++CGQV  +L PCI ++ +GG +   CC GVRSL + A+TT DRQ+ CNCLKQA   IP  N N   AAGLPG CGV+IPYKIS STDC  ++
Sbjct:   19 CMAVGGPKAMAAVSCGQVVNNLTPCINYVANGGALNPSCCTGVRSLYSLAQTTADRQSICNCLKQAVNGIPYTNANAGLAAGLPGKCGVNIPYKISPSTDCKSIK 123          
BLAST of CF834368 vs. ExPASy Swiss-Prot
Match: NLTP1_ORYSJ (Non-specific lipid-transfer protein 1 OS=Oryza sativa subsp. japonica GN=LTP PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.381e-28
Identity = 58/104 (55.77%), Postives = 72/104 (69.23%), Query Frame = 2
Query:   53 VLCMLVTGPLSAQAITCGQVSGSLAPCIGFLKSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 364
            V  +L+  P +A AITCGQV+ ++ PC+ + + G      CC+GVRSL AAA TT DR+TACNCLK AAR I  LN  NAA +P  CGVS+PY IS S DCS+V
Sbjct:   12 VAALLLAAPHAAVAITCGQVNSAVGPCLTYARGGAGPSAACCSGVRSLKAAASTTADRRTACNCLKNAARGIKGLNAGNAASIPSKCGVSVPYTISASIDCSRV 115          
The following BLAST results are available for this feature:
BLAST of CF834368 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
NLTPA_BRAOT1.491e-3056.19Non-specific lipid-transfer protein A OS=Brassica ... [more]
NLTP1_TOBAC1.491e-3060.75Non-specific lipid-transfer protein 1 OS=Nicotiana... [more]
NLTP1_ARATH1.947e-3058.10Non-specific lipid-transfer protein 1 OS=Arabidops... [more]
NLTP2_GOSHI3.322e-3057.01Non-specific lipid-transfer protein OS=Gossypium h... [more]
NLTP1_GOSHI3.322e-3057.01Non-specific lipid-transfer protein OS=Gossypium h... [more]
NLTP_GERHY5.666e-3057.69Non-specific lipid-transfer protein OS=Gerbera hyb... [more]
NLTPD_BRAOT7.400e-3057.14Non-specific lipid-transfer protein D OS=Brassica ... [more]
NLTP2_TOBAC6.265e-2957.01Non-specific lipid-transfer protein 2 OS=Nicotiana... [more]
NLTP3_PRUDU1.069e-2856.19Non-specific lipid-transfer protein 3 OS=Prunus du... [more]
NLTP1_ORYSJ2.381e-2855.77Non-specific lipid-transfer protein 1 OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05G15_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05G15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834368 ID=CF834368; Name=CF834368; organism=Citrus sinensis; type=EST; length=585bp
GCCGTTAAGGAGAAATGTGAAATGGNTGCCCTCAAGCTTGTTCCCTTTTT
AGGTTCTGTGCATGTTGGTGACTGGTCCCCTGAGTGCTCAGGCCATAACA
TGTGGGCAGGTGAGTGGCTCATTGGCACCATGCATCGGTTTCTTGAAATC
GGGCGGCCCTATACCTATGCCATGCTGCAACGGCGTCAGGTCTCTCAACG
CTGCCGCCAGAACCACACCTGACCGCCAAACTGCATGCAACTGCTTGAAG
CAAGCCGCCAGATCAATCCCTAGCCTCAACCTTAATAATGCTGCTGGTCT
TCCAGGAGCTTGTGGAGTCAGCATTCCTTACAAGATCAGCACCTCCACTG
ACTGCTCTAAGGTCAGGTGAACAGGAATCTGGGCCGTTGATTTTCAGGCT
TAAGTTGACGGAGTAGAATAAATGTATAATAATAAGGACATTTTTGTGTC
CGATTTATGAGTCTCTCTCTACACTTTGTACTGCGAGTCTCGTTCGCGCC
CTCGTTTCATGTTATGTTTTATTGTCTTTGCTTTTCATGTCATCGTCAGT
TTGTGTCTATTCTGATTATTAAATGAAATCTTGCC
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