CF834368

Overview
NameCF834368
Unique NameCF834368
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length585
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834368 vs. ExPASy Swiss-Prot
Match: NLTP_BETVU (Non-specific lipid-transfer protein OS=Beta vulgaris GN=IWF1' PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 3.801e-26
Identity = 55/104 (52.88%), Postives = 72/104 (69.23%), Query Frame = 2
Query:   53 VLCMLVTGPLSAQAITCGQVSGSLAPCIGFLKSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 364
            V+CM+V  PL A+AITCG V+  LAPCIG+L+        CC G++SLN+AA +  DR+TAC CLK AA SI  +N   AA LP  CGVS+PY IS +T+C+ +
Sbjct:   14 VMCMMVAAPL-AEAITCGLVASKLAPCIGYLQGAPGPSAACCGGIKSLNSAAASPADRKTACTCLKSAATSIKGINYGKAASLPRQCGVSVPYAISPNTNCNAI 116          
BLAST of CF834368 vs. ExPASy Swiss-Prot
Match: NLTP5_ARATH (Non-specific lipid-transfer protein 5 OS=Arabidopsis thaliana GN=LTP5 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.886e-25
Identity = 58/107 (54.21%), Postives = 76/107 (71.03%), Query Frame = 2
Query:   53 VLCMLVTGPLSAQA-ITCGQVSGSLAPCIGFLKSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPS-LNLNNAAGLPGACGVSIPYKISTSTDCSKVR 367
            ++CMLVT P++++A I+CG V+GSL  C  +L  GG IP  CC+GV+ LN+ ARTT DRQ AC C++ AAR++ S LN   AA LPGAC V I Y IS  T+C+ VR
Sbjct:   12 IVCMLVTAPMASEAAISCGAVTGSLGQCYNYLTRGGFIPRGCCSGVQRLNSLARTTRDRQQACRCIQGAARALGSRLNAGRAARLPGACRVRISYPISARTNCNTVR 118          
BLAST of CF834368 vs. ExPASy Swiss-Prot
Match: NLTP1_HORVU (Non-specific lipid-transfer protein 1 OS=Hordeum vulgare GN=LTP1 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.557e-24
Identity = 52/105 (49.52%), Postives = 71/105 (67.62%), Query Frame = 2
Query:   53 VLCMLVTGPLSAQAITCGQVSGSLAPCIGFLKSGGPIPM-PCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 364
            ++ ML   P +A A+ CGQV   + PC+ +++ GGP P   CCNGVR L+  A+++ DRQT CNCLK  AR I +LNLNNAA +P  C V++PY IS   DCS++
Sbjct:   13 LVLMLTAAPRAAVALNCGQVDSKMKPCLTYVQ-GGPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIHNLNLNNAASIPSKCNVNVPYTISPDIDCSRI 116          
BLAST of CF834368 vs. ExPASy Swiss-Prot
Match: NLTP3_VITSX (Non-specific lipid-transfer protein P3 OS=Vitis sp. PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 4.646e-24
Identity = 48/90 (53.33%), Postives = 65/90 (72.22%), Query Frame = 2
Query:   95 ITCGQVSGSLAPCIGFLKSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 364
            ++CG V+  +A CI +L+  GP+P  CCNGV++L  +A TT DR+TAC CL  A+++I  +N   AAGLP  CGVSIPYKIS ST+C +V
Sbjct:    1 LSCGDVATQMASCINYLRGAGPLPAACCNGVKNLKNSATTTQDRRTACKCLISASKTISGVNFGLAAGLPAKCGVSIPYKISPSTNCDQV 90          
BLAST of CF834368 vs. ExPASy Swiss-Prot
Match: NLTP6_GOSHI (Non-specific lipid-transfer protein 6 OS=Gossypium hirsutum GN=LTP6 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 7.925e-24
Identity = 54/107 (50.47%), Postives = 67/107 (62.62%), Query Frame = 2
Query:   53 VLCMLVTGPLSAQAITCGQVSGSLAPCIGFLKSGGPIPMP--CCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 367
            VLC+LV  PL+  AI+  QV  SL PC+G+++     P P   C G+RSL +AAR   DRQ AC C+K  A  I  +N   AAGLPG C V IPYKIS S DC +V+
Sbjct:   14 VLCLLVDAPLAQGAISYDQVKSSLLPCVGYVRGNNARPAPPNYCKGIRSLKSAARIRLDRQAACKCIKSLAADISDINYGVAAGLPGQCNVHIPYKISPSIDCKRVK 120          
BLAST of CF834368 vs. ExPASy Swiss-Prot
Match: NLTP3_HORVU (Non-specific lipid-transfer protein 3 OS=Hordeum vulgare GN=LTP3 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.306e-23
Identity = 48/92 (52.17%), Postives = 67/92 (72.83%), Query Frame = 2
Query:   92 AITCGQVSGSLAPCIGFLK-SGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 364
            AI+CGQVS +L+PCI + + +G   P+ CC+GV+ L  AA++T D+Q AC CLK  A SI  +N+   +G+PG CGVS+P+ IS STDC+KV
Sbjct:   26 AISCGQVSSALSPCISYARGNGAKPPVACCSGVKRLAGAAQSTADKQAACRCLKSLATSIKGINMGKVSGVPGKCGVSVPFPISMSTDCNKV 117          
BLAST of CF834368 vs. ExPASy Swiss-Prot
Match: NLTP_ELECO (Non-specific lipid-transfer protein OS=Eleusine coracana PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 8.762e-23
Identity = 51/93 (54.84%), Postives = 64/93 (68.82%), Query Frame = 2
Query:   92 AITCGQVSGSLAPCIGFLKSGGPIPMPCC-NGVRSLNAAARTTPDRQTACNC-LKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 364
            AI+CGQVS ++ PC+ + +  G  P   C +GVRSLNAAARTT DR+ ACNC LK AA  +  LN   A+ +PG CGV +PY IS S DCS+V
Sbjct:    1 AISCGQVSSAIGPCLAYARGAGAAPSASCQSGVRSLNAAARTTADRRAACNCSLKSAASRVSGLNAGKASSIPGRCGVRLPYAISASIDCSRV 93          
BLAST of CF834368 vs. ExPASy Swiss-Prot
Match: NLTP4_ORYSJ (Non-specific lipid-transfer protein 4 OS=Oryza sativa subsp. japonica GN=Os12g0114500 PE=3 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 1.495e-22
Identity = 55/107 (51.40%), Postives = 72/107 (67.29%), Query Frame = 2
Query:   53 VLCMLVTGPLSAQAITCGQVSGSLAPCIGFLKSGGPIPMP---CCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 364
            V+ +L+  P +A A+TCGQV   LAPCI +  + G +  P   CC+GVR+LN+AA TT DRQT C CLKQ   ++  L  +  AG+P  CGV+IPY IS STDCS+V
Sbjct:   15 VVALLLAAP-AASAVTCGQVVSMLAPCIMY--ATGRVSAPTGGCCDGVRTLNSAAATTADRQTTCACLKQQTSAMGGLRPDLVAGIPSKCGVNIPYAISPSTDCSRV 118          
BLAST of CF834368 vs. ExPASy Swiss-Prot
Match: NLT43_HORVU (Non-specific lipid-transfer protein 4.3 OS=Hordeum vulgare GN=LTP4.3 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 4.349e-22
Identity = 49/93 (52.69%), Postives = 65/93 (69.89%), Query Frame = 2
Query:   92 AITCGQVSGSLAPCIGFLK-SGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 367
            AI+CGQVS +L+PCI + + +G   P+ CC+GV+ L  AA++T D+Q AC C+K AA     LN   AAG+P  CGVS+PY IS S DCSK+R
Sbjct:   26 AISCGQVSSALSPCISYARGNGAKPPVACCSGVKRLAGAAQSTADKQAACKCIKSAAGG---LNAGKAAGIPSMCGVSVPYAISASVDCSKIR 115          
BLAST of CF834368 vs. ExPASy Swiss-Prot
Match: NLT42_HORVU (Non-specific lipid-transfer protein 4.2 OS=Hordeum vulgare GN=LTP4.2 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 4.349e-22
Identity = 49/93 (52.69%), Postives = 65/93 (69.89%), Query Frame = 2
Query:   92 AITCGQVSGSLAPCIGFLK-SGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 367
            AI+CGQVS +L+PCI + + +G   P+ CC+GV+ L  AA++T D+Q AC C+K AA     LN   AAG+P  CGVS+PY IS S DCSK+R
Sbjct:   26 AISCGQVSSALSPCISYARGNGAKPPVACCSGVKRLAGAAQSTADKQAACKCIKSAAGG---LNAGKAAGIPSMCGVSVPYAISASVDCSKIR 115          
The following BLAST results are available for this feature:
BLAST of CF834368 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
NLTP_BETVU3.801e-2652.88Non-specific lipid-transfer protein OS=Beta vulgar... [more]
NLTP5_ARATH1.886e-2554.21Non-specific lipid-transfer protein 5 OS=Arabidops... [more]
NLTP1_HORVU3.557e-2449.52Non-specific lipid-transfer protein 1 OS=Hordeum v... [more]
NLTP3_VITSX4.646e-2453.33Non-specific lipid-transfer protein P3 OS=Vitis sp... [more]
NLTP6_GOSHI7.925e-2450.47Non-specific lipid-transfer protein 6 OS=Gossypium... [more]
NLTP3_HORVU2.306e-2352.17Non-specific lipid-transfer protein 3 OS=Hordeum v... [more]
NLTP_ELECO8.762e-2354.84Non-specific lipid-transfer protein OS=Eleusine co... [more]
NLTP4_ORYSJ1.495e-2251.40Non-specific lipid-transfer protein 4 OS=Oryza sat... [more]
NLT43_HORVU4.349e-2252.69Non-specific lipid-transfer protein 4.3 OS=Hordeum... [more]
NLT42_HORVU4.349e-2252.69Non-specific lipid-transfer protein 4.2 OS=Hordeum... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05G15_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05G15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834368 ID=CF834368; Name=CF834368; organism=Citrus sinensis; type=EST; length=585bp
GCCGTTAAGGAGAAATGTGAAATGGNTGCCCTCAAGCTTGTTCCCTTTTT
AGGTTCTGTGCATGTTGGTGACTGGTCCCCTGAGTGCTCAGGCCATAACA
TGTGGGCAGGTGAGTGGCTCATTGGCACCATGCATCGGTTTCTTGAAATC
GGGCGGCCCTATACCTATGCCATGCTGCAACGGCGTCAGGTCTCTCAACG
CTGCCGCCAGAACCACACCTGACCGCCAAACTGCATGCAACTGCTTGAAG
CAAGCCGCCAGATCAATCCCTAGCCTCAACCTTAATAATGCTGCTGGTCT
TCCAGGAGCTTGTGGAGTCAGCATTCCTTACAAGATCAGCACCTCCACTG
ACTGCTCTAAGGTCAGGTGAACAGGAATCTGGGCCGTTGATTTTCAGGCT
TAAGTTGACGGAGTAGAATAAATGTATAATAATAAGGACATTTTTGTGTC
CGATTTATGAGTCTCTCTCTACACTTTGTACTGCGAGTCTCGTTCGCGCC
CTCGTTTCATGTTATGTTTTATTGTCTTTGCTTTTCATGTCATCGTCAGT
TTGTGTCTATTCTGATTATTAAATGAAATCTTGCC
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