CF834368

Overview
NameCF834368
Unique NameCF834368
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length585
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834368 vs. ExPASy Swiss-Prot
Match: NLTP3_ORYSJ (Non-specific lipid-transfer protein 3 OS=Oryza sativa subsp. japonica GN=LTP110-A PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 7.418e-22
Identity = 47/105 (44.76%), Postives = 69/105 (65.71%), Query Frame = 2
Query:   53 VLCMLVTGPLSAQAITCGQVSGSLAPCIGFLKSGGPIPMP-CCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 364
            V+   V    ++ A++CG V+ S+APC+ ++      P   CC+GVR+LN  A ++ DR+TAC+CLK  A S  +LN+ NAA +P  CGVS+ + ISTS DCSK+
Sbjct:   16 VVAAAVVAERASAAVSCGDVTSSIAPCLSYVMGRESSPSSSCCSGVRTLNGKASSSADRRTACSCLKNMASSFRNLNMGNAASIPSKCGVSVAFPISTSVDCSKI 120          
BLAST of CF834368 vs. ExPASy Swiss-Prot
Match: NLTP3_ORYSI (Non-specific lipid-transfer protein 3 OS=Oryza sativa subsp. indica GN=LTP110-A PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 7.418e-22
Identity = 47/105 (44.76%), Postives = 69/105 (65.71%), Query Frame = 2
Query:   53 VLCMLVTGPLSAQAITCGQVSGSLAPCIGFLKSGGPIPMP-CCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 364
            V+   V    ++ A++CG V+ S+APC+ ++      P   CC+GVR+LN  A ++ DR+TAC+CLK  A S  +LN+ NAA +P  CGVS+ + ISTS DCSK+
Sbjct:   16 VVAAAVVAERASAAVSCGDVTSSIAPCLSYVMGRESSPSSSCCSGVRTLNGKASSSADRRTACSCLKNMASSFRNLNMGNAASIPSKCGVSVAFPISTSVDCSKI 120          
BLAST of CF834368 vs. ExPASy Swiss-Prot
Match: NLT41_HORVU (Non-specific lipid-transfer protein 4.1 OS=Hordeum vulgare GN=LTP4.1 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 7.418e-22
Identity = 49/93 (52.69%), Postives = 64/93 (68.82%), Query Frame = 2
Query:   92 AITCGQVSGSLAPCIGFLK-SGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 367
            AI+CGQVS +L+PCI + + +G   P  CC+GV+ L  AA++T D+Q AC C+K AA     LN   AAG+P  CGVS+PY IS S DCSK+R
Sbjct:   26 AISCGQVSSALSPCISYARGNGAKPPAACCSGVKRLAGAAQSTADKQAACKCIKSAAGG---LNAGKAAGIPSMCGVSVPYAISASVDCSKIR 115          
BLAST of CF834368 vs. ExPASy Swiss-Prot
Match: NLTPC_ARATH (Non-specific lipid-transfer protein 12 OS=Arabidopsis thaliana GN=LTP12 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.265e-21
Identity = 49/104 (47.12%), Postives = 65/104 (62.50%), Query Frame = 2
Query:   53 VLCMLVTGPLSAQAITCGQVSGSLAPCIGFLKSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 364
            VL + +  P  +  I CG V+ +LA C+ +L + GP+P  CC GV+SL   A+TTPDR+  C CLK A + I  LN +  A LP  CGVSIPY IS ST+C  +
Sbjct:   13 VLTIYMASPTES-TIQCGTVTSTLAQCLTYLTNSGPLPSQCCVGVKSLYQLAQTTPDRKQVCECLKLAGKEIKGLNTDLVAALPTTCGVSIPYPISFSTNCDSI 115          
BLAST of CF834368 vs. ExPASy Swiss-Prot
Match: NLTP1_WHEAT (Non-specific lipid-transfer protein (Fragment) OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 2.158e-21
Identity = 50/105 (47.62%), Postives = 71/105 (67.62%), Query Frame = 2
Query:   53 VLCMLVTGPLSAQAITCGQVSGSLAPCIGFLKSGGPIPM-PCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 364
            ++ ML   P +A AI CG V   + PC+ +++ GGP P   CC+GV++L+  AR+  DRQ+ACNCLK  AR I +LN +NA  +P  CGV++PY IS + DCS+V
Sbjct:   10 LVLMLAAVPRAAVAIDCGHVDSLVRPCLSYVQ-GGPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIHNLNEDNARSIPPKCGVNLPYTISLNIDCSRV 113          
BLAST of CF834368 vs. ExPASy Swiss-Prot
Match: NLTP7_ARATH (Non-specific lipid-transfer protein 7 OS=Arabidopsis thaliana GN=LTP7 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.386e-20
Identity = 50/106 (47.17%), Postives = 72/106 (67.92%), Query Frame = 2
Query:   62 MLVTGPLSAQA-ITCGQVSGSLAPCIGFLKSGG---PIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSI-PSLNLNNAAGLPGACGVSIPY--KISTSTDCS 358
            ++  GP++A+A ++CG+V+ +L PC G+L +GG   P P  CCNGVR LN    TT DR+ AC C+K AAR++ P LN + AAG+P  CG+ IPY  +I  +T C+
Sbjct:   15 VIAAGPITAKAALSCGEVNSNLKPCTGYLTNGGITSPGPQ-CCNGVRKLNGMVLTTLDRRQACRCIKNAARNVGPGLNADRAAGIPRRCGIKIPYSTQIRFNTKCN 119          
BLAST of CF834368 vs. ExPASy Swiss-Prot
Match: NLTP8_HORVU (Non-specific lipid-transfer protein Cw18 OS=Hordeum vulgare GN=CW18 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.070e-20
Identity = 47/92 (51.09%), Postives = 57/92 (61.96%), Query Frame = 2
Query:   92 AITCGQVSGSLAPCIGFLKSGGPIPMP-CCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 364
            AITCGQVS +L PC  + K  G  P   CC+GV+ L   AR+T D+Q  C CLK  A +    N   AAG+P  CGVS+PY IS S DCSK+
Sbjct:   26 AITCGQVSSALGPCAAYAKGSGTSPSAGCCSGVKRLAGLARSTADKQATCRCLKSVAGAY---NAGRAAGIPSRCGVSVPYTISASVDCSKI 114          
BLAST of CF834368 vs. ExPASy Swiss-Prot
Match: NLTPA_ARATH (Non-specific lipid-transfer protein 10 OS=Arabidopsis thaliana GN=LTP10 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.500e-19
Identity = 45/109 (41.28%), Postives = 63/109 (57.80%), Query Frame = 2
Query:   56 LCMLVTGPL---SAQAITCGQVSGSLAPCIGFLKSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAAR--SIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 367
            LC+L+       S  AI+C  V  +L PC+ ++  GG IP  CCNG+R L+  A +  D+Q  C C+K      S  S+ L  AA LPG CGV +PYKI  ST+C+ ++
Sbjct:    8 LCLLLASIFAWGSEAAISCNAVQANLYPCVVYVVQGGAIPYSCCNGIRMLSKQATSASDKQGVCRCIKSVVGRVSYSSIYLKKAAALPGKCGVKLPYKIDPSTNCNSIK 116          
BLAST of CF834368 vs. ExPASy Swiss-Prot
Match: NLTP6_ARATH (Non-specific lipid-transfer protein 6 OS=Arabidopsis thaliana GN=LTP6 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.877e-19
Identity = 40/106 (37.74%), Postives = 62/106 (58.49%), Query Frame = 2
Query:   56 LCMLVTGPLSAQAITCGQVSGSLAPCIGFLKSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQA--ARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 367
            +C+++       A++C  V   L PC+ ++  GGP+P  CCNG+ +L + A+T+ DRQ  C C+K A    ++    + NA  LP  CGV +PYK S STDC  ++
Sbjct:    8 VCLVLALHCGEAAVSCNTVIADLYPCLSYVTQGGPVPTLCCNGLTTLKSQAQTSVDRQGVCRCIKSAIGGLTLSPRTIQNALELPSKCGVDLPYKFSPSTDCDSIQ 113          
BLAST of CF834368 vs. ExPASy Swiss-Prot
Match: NLTPB_ARATH (Non-specific lipid-transfer protein 11 OS=Arabidopsis thaliana GN=LTP11 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.309e-18
Identity = 49/105 (46.67%), Postives = 65/105 (61.90%), Query Frame = 2
Query:   53 VLCMLVTGPLSAQAITCGQVSGSLAPCIGFLKSGG-PIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 364
            V+ +L+      +AI C QV+  LA C+ +LK+GG P PM CCNG+ SL AAA    DRQ ACNCLK  A +IP +N + A  LP  CGV+I    S + DC+ +
Sbjct:   15 VITILLGIAYHGEAIACPQVNMYLAQCLPYLKAGGNPSPM-CCNGLNSLKAAAPEKADRQVACNCLKSVANTIPGINDDFAKQLPAKCGVNIGVPFSKTVDCNSI 118          
The following BLAST results are available for this feature:
BLAST of CF834368 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
NLTP3_ORYSJ7.418e-2244.76Non-specific lipid-transfer protein 3 OS=Oryza sat... [more]
NLTP3_ORYSI7.418e-2244.76Non-specific lipid-transfer protein 3 OS=Oryza sat... [more]
NLT41_HORVU7.418e-2252.69Non-specific lipid-transfer protein 4.1 OS=Hordeum... [more]
NLTPC_ARATH1.265e-2147.12Non-specific lipid-transfer protein 12 OS=Arabidop... [more]
NLTP1_WHEAT2.158e-2147.62Non-specific lipid-transfer protein (Fragment) OS=... [more]
NLTP7_ARATH2.386e-2047.17Non-specific lipid-transfer protein 7 OS=Arabidops... [more]
NLTP8_HORVU4.070e-2051.09Non-specific lipid-transfer protein Cw18 OS=Hordeu... [more]
NLTPA_ARATH4.500e-1941.28Non-specific lipid-transfer protein 10 OS=Arabidop... [more]
NLTP6_ARATH5.877e-1937.74Non-specific lipid-transfer protein 6 OS=Arabidops... [more]
NLTPB_ARATH1.309e-1846.67Non-specific lipid-transfer protein 11 OS=Arabidop... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05G15_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05G15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834368 ID=CF834368; Name=CF834368; organism=Citrus sinensis; type=EST; length=585bp
GCCGTTAAGGAGAAATGTGAAATGGNTGCCCTCAAGCTTGTTCCCTTTTT
AGGTTCTGTGCATGTTGGTGACTGGTCCCCTGAGTGCTCAGGCCATAACA
TGTGGGCAGGTGAGTGGCTCATTGGCACCATGCATCGGTTTCTTGAAATC
GGGCGGCCCTATACCTATGCCATGCTGCAACGGCGTCAGGTCTCTCAACG
CTGCCGCCAGAACCACACCTGACCGCCAAACTGCATGCAACTGCTTGAAG
CAAGCCGCCAGATCAATCCCTAGCCTCAACCTTAATAATGCTGCTGGTCT
TCCAGGAGCTTGTGGAGTCAGCATTCCTTACAAGATCAGCACCTCCACTG
ACTGCTCTAAGGTCAGGTGAACAGGAATCTGGGCCGTTGATTTTCAGGCT
TAAGTTGACGGAGTAGAATAAATGTATAATAATAAGGACATTTTTGTGTC
CGATTTATGAGTCTCTCTCTACACTTTGTACTGCGAGTCTCGTTCGCGCC
CTCGTTTCATGTTATGTTTTATTGTCTTTGCTTTTCATGTCATCGTCAGT
TTGTGTCTATTCTGATTATTAAATGAAATCTTGCC
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