CF834383

Overview
NameCF834383
Unique NameCF834383
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length613
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834383 vs. ExPASy Swiss-Prot
Match: YHIT_HELPY (Uncharacterized HIT-like protein HP_0404 OS=Helicobacter pylori GN=HP_0404 PE=4 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.503e-11
Identity = 36/105 (34.29%), Postives = 60/105 (57.14%), Query Frame = -1
Query:  197 IFDKIINKEIPSKVVYEDDKVLAFRDIDPQAPTHILIIPKVK-DGLTGLSKAEERHCEIFGRLL-YTAKLVAKQEGLEDGFRIVINDGPNGGQSVFHIHVHLLGG 505
            +F+KII  EIP   + E+++ L+F DI+P+A  H L+IPK       G++       E+  ++  +  ++V K    E G++++ N G N GQ V H+H H+L G
Sbjct:    3 VFEKIIQGEIPCSKILENERFLSFYDINPKAKVHALVIPKQSIQDFNGITP------ELMAQMTSFIFEVVEKLGIKEKGYKLLTNVGKNAGQEVMHLHFHILSG 101          
BLAST of CF834383 vs. ExPASy Swiss-Prot
Match: YHIT_HELPJ (Uncharacterized HIT-like protein jhp_0977 OS=Helicobacter pylori J99 GN=jhp_0977 PE=4 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.503e-11
Identity = 36/105 (34.29%), Postives = 60/105 (57.14%), Query Frame = -1
Query:  197 IFDKIINKEIPSKVVYEDDKVLAFRDIDPQAPTHILIIPKVK-DGLTGLSKAEERHCEIFGRLL-YTAKLVAKQEGLEDGFRIVINDGPNGGQSVFHIHVHLLGG 505
            +F+KII  EIP   + E+++ L+F DI+P+A  H L+IPK       G++       E+  ++  +  ++V K    E G++++ N G N GQ V H+H H+L G
Sbjct:    3 VFEKIIQGEIPCSKILENERFLSFYDINPKAKVHALVIPKQSIQDFNGITP------ELMAQMTSFIFEVVEKLGIKEKGYKLLTNVGKNAGQEVMHLHFHILSG 101          
BLAST of CF834383 vs. ExPASy Swiss-Prot
Match: YHIT_BORBU (Uncharacterized HIT-like protein BB_0379 OS=Borrelia burgdorferi GN=BB_0379 PE=4 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.493e-11
Identity = 42/103 (40.78%), Postives = 55/103 (53.40%), Query Frame = -1
Query:  203 IFDKIINKEIPSKVVYEDDKVLAFRDIDPQAPTHILIIPKV-KDGLTGL-SKAEERHCEIFGRLLYTAKLVAKQEGLEDGFRIVINDGPNGGQSVFHIHVHLL 505
            IF KIINKE+PS  VYEDD VLAF DI+P    H L+IPK   + L  +  K  ER  ++  ++    K +     +  G  I    G   GQ VFH H H++
Sbjct:    5 IFCKIINKELPSYKVYEDDLVLAFLDINPLTVGHTLVIPKEHSESLLNMDDKFNERVLKVCKKISNALKRI--NSSIYGGINIYSALGAGAGQEVFHTHFHVI 105          
The following BLAST results are available for this feature:
BLAST of CF834383 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
YHIT_HELPY6.503e-1134.29Uncharacterized HIT-like protein HP_0404 OS=Helico... [more]
YHIT_HELPJ6.503e-1134.29Uncharacterized HIT-like protein jhp_0977 OS=Helic... [more]
YHIT_BORBU8.493e-1140.78Uncharacterized HIT-like protein BB_0379 OS=Borrel... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05H03_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834383 ID=CF834383; Name=CF834383; organism=Citrus sinensis; type=EST; length=613bp
CTTTTAAACCTTTCAGCACAATGTCATTTCACATCATATCACCTAATGTG
GCTCAAAGCAGCCACCAATTAGTTTGTTATTTGAAGCTCGATGCAGCTTG
ATGCATATTAAAGTACAAAGGGCATAATCATTTTTTCATAAGAGAATCTG
GCACCCAAAATACTTCATCTTAGCCCGGGGGCCAGTTCATTTGTCGTCCT
CCTAGGAGGTGGACGTGGATGTGAAAAACTGATTGACCTCCATTTGGCCC
ATCATTAATCACAATCCTAAAGCCGTCTTCTAGTCCTTCCTGTTTAGCAA
CAAGCTTAGCAGTGTAAAGAAGGCGGCCAAAAATTTCGCAATGCCTTTCC
TCGGCCTTTGAAAGTCCAGTCAAGCCATCCTTCACTTTGGGAATAATTAG
AATGTGTGTAGGAGCTTGGGGATCTATGTCCCTAAAGGCTAAGACCTTAT
CATCCTCATAAACAACTTTAGATGGGATTTCTTTGTTAATTATTTTGTCA
AATATGGTAGGCGAATCAGAAGGAACGGCTGCAACAGCAGCCTCGTTCTC
TGAAGCCATGACGACGGCAGACAAATGAGACGTCAGCACTGCAAGTCGGC
TGCTTGTGCTTGA
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